ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags1d09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SPKC_SYNY3 (P74745) Serine/threonine-protein kinase C (EC 2.7.11.1) 32 0.44
2PI5PA_HUMAN (Q15735) Phosphatidylinositol 4,5-bisphosphate 5-pho... 32 0.76
3PE23_MYCTU (P0A684) Hypothetical PE family protein PE23 31 1.3
4PE23_MYCBO (P0A685) Hypothetical PE family protein PE23 31 1.3
5DSX_DROME (P23023) Protein doublesex 30 1.7
6KEN_DROME (O77459) Probable transcription factor Ken (Protein Ke... 30 2.2
7PPZ_SCHPO (P78968) Serine/threonine-protein phosphatase PP-Z (EC... 30 2.2
8SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-a... 29 3.7
9PAAD_RICPR (Q9ZD09) Probable aromatic acid decarboxylase (EC 4.1... 29 4.9
10NRG2_RAT (O35569) Pro-neuregulin-2, membrane-bound isoform precu... 28 6.4
11BUN2_DROME (Q24523) Protein bunched, class 2 isoform (Protein sh... 28 6.4
12YXIO_BACSU (P42306) Hypothetical protein yxiO 26 8.2
13PLS3_HUMAN (Q9NRY6) Phospholipid scramblase 3 (PL scramblase 3) ... 28 8.3
14CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor 28 8.3
15FA18_DROME (Q8IQC1) FAM18-like protein CG5021 28 8.3

>SPKC_SYNY3 (P74745) Serine/threonine-protein kinase C (EC 2.7.11.1)|
          Length = 535

 Score = 32.3 bits (72), Expect = 0.44
 Identities = 20/56 (35%), Positives = 27/56 (48%)
 Frame = +3

Query: 195 APSLSCRKTRTPPESASHGATDXISLVAPAALPGPRSFPSP*VTATGAXMPSIPVT 362
           +PS S   T +P E          SL  PA +P P+  PSP ++   +   SIPVT
Sbjct: 417 SPSPSPETTSSPTEDTITPMEPEPSLDEPAPIPEPKPSPSPTISPQPSPTISIPVT 472



to top

>PI5PA_HUMAN (Q15735) Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (EC|
            3.1.3.56)
          Length = 1006

 Score = 31.6 bits (70), Expect = 0.76
 Identities = 18/55 (32%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
 Frame = +3

Query: 192  KAPSLSCRK-TRTPPESASHGATDXISLVAPAALPGPRSFPSP*VTATGAXMPSI 353
            ++PS   R+ +R  P+ +S+G++   S   P+ LPGP +FP P V  +   +P++
Sbjct: 911  RSPSPQSRRLSRVAPDRSSNGSSRGSSEEGPSGLPGPWAFP-PAVPRSLGLLPAL 964



to top

>PE23_MYCTU (P0A684) Hypothetical PE family protein PE23|
          Length = 382

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -3

Query: 298 GPGSAAGATRDIXSVAPWLADSGGVLV 218
           G GSAA     + S APWLA SGG  +
Sbjct: 178 GQGSAAKLATALQSAAPWLAKSGGEFI 204



to top

>PE23_MYCBO (P0A685) Hypothetical PE family protein PE23|
          Length = 382

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -3

Query: 298 GPGSAAGATRDIXSVAPWLADSGGVLV 218
           G GSAA     + S APWLA SGG  +
Sbjct: 178 GQGSAAKLATALQSAAPWLAKSGGEFI 204



to top

>DSX_DROME (P23023) Protein doublesex|
          Length = 549

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 196 HHHYHAGRREHPRNQPAME 252
           HHH+H    +HP  QPA +
Sbjct: 212 HHHHHQNHHQHPHQQPATQ 230



to top

>KEN_DROME (O77459) Probable transcription factor Ken (Protein Ken and Barbie)|
          Length = 601

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +1

Query: 67  NDTXGQXNRKDA*THRV--LTNNPAAKTTRLSSSLCATSPYIFRKHHHYHAGRREHPRN 237
           +D   + N+ D  T  +  L+N P + T+  +S++  +S +  ++HHH+H     +  N
Sbjct: 205 DDCTHKDNKSDKDTDEIVNLSNAPPSGTSGSNSNISTSSNHQQQQHHHHHHHNHNNNNN 263



to top

>PPZ_SCHPO (P78968) Serine/threonine-protein phosphatase PP-Z (EC 3.1.3.16)|
          Length = 515

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
 Frame = +1

Query: 154 SSSLCATSPYIFRKHHHYHAGRRE------HPRNQPAM 249
           S  + ATSP + +KH    +G         HP NQPAM
Sbjct: 73  SPGILATSPAVLQKHQQEDSGNSSQSPTSPHPSNQPAM 110



to top

>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated|
           protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor
           SF3b 49 kDa subunit)
          Length = 424

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 228 PPESASHGATDXI-SLVAPAALPGPRSFPSP*VTATGAXMPSIP 356
           PP SA +     + S + P  +P P SFP P V   GA  P IP
Sbjct: 216 PPPSAPNPVVSSLGSGLPPPGMPPPGSFPPP-VPPPGALPPGIP 258



to top

>PAAD_RICPR (Q9ZD09) Probable aromatic acid decarboxylase (EC 4.1.1.-)|
          Length = 189

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 197 CFLKIYGEVAHREEDSLVVFAAGLLVK 117
           C +K    +AH  EDSL+  AAG+++K
Sbjct: 89  CSMKTLASIAHSMEDSLISRAAGVVLK 115



to top

>NRG2_RAT (O35569) Pro-neuregulin-2, membrane-bound isoform precursor|
           (Pro-NRG2) [Contains: Neuregulin-2 (NRG-2) (Neural- and
           thymus-derived activator for ERBB kinases) (NTAK)]
          Length = 868

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 20/76 (26%), Positives = 35/76 (46%)
 Frame = +3

Query: 90  QKRRINAQGFN*QSSSEDNKTIFLSMCDLTIYL*KAPSLSCRKTRTPPESASHGATDXIS 269
           +K R ++  ++  SSS  +     S    +    ++ S S R + T   S+ +  ++  S
Sbjct: 14  EKARCSSYSYSDSSSSSSSNNSSSSTSSRSSS--RSSSRSSRGSTTTTSSSENSGSNSGS 71

Query: 270 LVAPAALPGPRSFPSP 317
           +  PAA P PR  P P
Sbjct: 72  IFRPAAPPEPRPQPQP 87



to top

>BUN2_DROME (Q24523) Protein bunched, class 2 isoform (Protein shortsighted)|
          Length = 1206

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
 Frame = +1

Query: 49  KQYILVNDTXGQXNRKDA*THRVLTNNPAAK------TTRLSSSLCATSPYIFRKHHHYH 210
           +Q  LV+      +  ++ T     NN  A+      T+  + +  A   +  + HHH+H
Sbjct: 251 QQQQLVSSNNSSSSSNNSFTKASSPNNNGARSVGGAATSAATGTTAAAGSHHHQPHHHHH 310

Query: 211 AGRREHPRNQPAMEQQXQ 264
                H  +    +QQ Q
Sbjct: 311 HHHHHHQHHNHQQQQQQQ 328



to top

>YXIO_BACSU (P42306) Hypothetical protein yxiO|
          Length = 428

 Score = 25.8 bits (55), Expect(2) = 8.2
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 194 FLKIYGEVAHREEDSLVVFAAGLLVKTLCVYASFL 90
           F  IYG++A R     +++   ++   +CVYA F+
Sbjct: 287 FSIIYGKLAERFTGKTMLYVGIVIYMIVCVYAYFM 321



 Score = 20.8 bits (42), Expect(2) = 8.2
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -3

Query: 352 IEGMXAPVAVTHGEGNDLGPGSAA 281
           I+G+   + ++   G+DLG GS++
Sbjct: 249 IDGVGTIITMSTSYGSDLGIGSSS 272



to top

>PLS3_HUMAN (Q9NRY6) Phospholipid scramblase 3 (PL scramblase 3)|
           (Ca(2+)-dependent phospholipid scramblase 3)
          Length = 295

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +3

Query: 231 PESASHGATDXISLVA--PAALPGPRSFPSP*VTATGAXMPSIPV 359
           PE A H       + A  PA  PG   FPSP   A G+  P +P+
Sbjct: 25  PEPALHPGPGQAPVPAQVPAPAPGFALFPSPGPVALGSAAPFLPL 69



to top

>CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor|
          Length = 1372

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 237 SASHGATDXISLVAPAALPGPRSFPSP*VTATGAXMP 347
           + + GAT    +     LPGPR  P P V A GA  P
Sbjct: 312 TGAKGATGLPGVAGAPGLPGPRGIPGP-VGAAGATGP 347



to top

>FA18_DROME (Q8IQC1) FAM18-like protein CG5021|
          Length = 223

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 15/46 (32%), Positives = 20/46 (43%)
 Frame = -1

Query: 267 ILXLLLHGWLIPGVFSSSCMIVMVLSKDIW*GRT*RGR*SCCLRCW 130
           IL  +  GW      +S   +V+ LS D W  +   GR    LR W
Sbjct: 52  ILIYMFCGWFSDSFITSFVFVVLFLSADFWTVKNISGRLLVGLRWW 97


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,878,170
Number of Sequences: 219361
Number of extensions: 912280
Number of successful extensions: 3347
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3298
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top