ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags1d08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC130729.3| Oryza sativa (japonica cultivar-group) chromosome... 226 8e-56
2dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 226 8e-56
3dbj|AK073142.1| Oryza sativa (japonica cultivar-group) cDNA clon... 226 8e-56
4dbj|AK058751.1| Oryza sativa (japonica cultivar-group) cDNA clon... 226 8e-56
5dbj|AK071931.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 5e-20
6gb|AY107815.1| Zea mays PCO096780 mRNA sequence 74 7e-10
7ref|XM_807466.1| Trypanosoma cruzi strain CL Brener hypothetical... 42 2.4
8ref|XM_809851.1| Trypanosoma cruzi strain CL Brener hypothetical... 42 2.4
9gb|AC129299.3| Mus musculus BAC clone RP24-420E16 from chromosom... 42 2.4
10gb|AC117602.9| Mus musculus chromosome 5, clone RP23-462C22, com... 42 2.4
11gb|AE014178.1| Mus musculus piebald deletion region section 6 of... 42 2.4
12dbj|BA000038.2| Vibrio vulnificus YJ016 DNA, chromosome II, comp... 42 2.4
13gb|AC068726.5|AC068726 Homo sapiens chromosome 15 clone RP11-844... 42 2.4
14gb|AC084782.2|AC084782 Homo sapiens chromosome 15 clone RP11-48G... 42 2.4
15gb|AC005519.3|AC005519 Homo sapiens PAC clone RP5-919J22 from 14... 42 2.4
16gb|AC005479.2|AC005479 Homo sapiens PAC clone RP3-449M8 from 14q... 42 2.4
17gb|AC110921.9| Homo sapiens chromosome 17, clone CTD-2653B5, com... 42 2.4
18gb|AC116491.8| Homo sapiens chromosome 17, clone CTD-3089B9, com... 42 2.4
19gb|AC151910.4| Mus musculus BAC clone RP23-67A17 from 14, comple... 42 2.4
20gb|AE016796.1| Vibrio vulnificus CMCP6 chromosome II, complete s... 42 2.4
21gb|AC161427.4| Gallus gallus BAC clone CH261-60M14 from chromoso... 42 2.4
22gb|AC131670.5| Mus musculus BAC clone RP23-307I19 from 5, comple... 42 2.4
23gb|AC091333.6| Mus musculus chromosome 7, clone RP23-325M1, comp... 40 9.4
24gb|AF535134.1| Schizosaccharomyces pombe thioredoxin reductase g... 40 9.4
25gb|AC115361.5| Mus musculus BAC clone RP24-76P12 from chromosome... 40 9.4
26gb|AC138549.3| Mus musculus BAC clone RP23-173C1 from chromosome... 40 9.4
27emb|Z93385.1|CEM01E5 Caenorhabditis elegans Cosmid M01E5, comple... 40 9.4
28emb|AL031431.8|HS462O23 Human DNA sequence from clone RP3-462O23... 40 9.4
29emb|X96762.1|CETOPOI C.elegans mRNA for DNA topoisomerase I 40 9.4
30emb|AL022019.1|SPBC3F6 S.pombe chromosome II cosmid c3F6 40 9.4
31emb|CR384103.7| Zebrafish DNA sequence from clone DKEY-215K6 in ... 40 9.4
32gb|BC099344.1| Xenopus laevis cDNA clone MGC:116539 IMAGE:694022... 40 9.4
33ref|NM_001022668.1| Schizosaccharomyces pombe 972h- hypothetical... 40 9.4
34ref|NM_001026407.2| Caenorhabditis elegans TOPoisomerase family ... 40 9.4
35ref|NM_060936.4| Caenorhabditis elegans TOPoisomerase family mem... 40 9.4
36gb|AC027123.7| Homo sapiens chromosome 3 clone RP11-392M7 map 3p... 40 9.4
37dbj|AP001666.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 9.4
38emb|BX470230.5| Zebrafish DNA sequence from clone CH211-284B12 i... 40 9.4
39gb|U63713.1|SPU63713 Schizosaccharomyces pombe thioredoxin reduc... 40 9.4
40gb|AC142414.3| Mus musculus BAC clone RP23-372N15 from 8, comple... 40 9.4
41dbj|AP001172.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 40 9.4 
>gb|AC130729.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0668F02,
              complete sequence
          Length = 178061

 Score =  226 bits (114), Expect = 8e-56
 Identities = 274/326 (84%), Gaps = 6/326 (1%)
 Strand = Plus / Plus

                                                                          
Query: 329    ttagtttacaagatgaggactggcactcttgaaaggaagagtgcaggagtatgtgacata 388
              |||||| |||||||| || ||||  |||||||||||||| ||||||||||| ||||||||
Sbjct: 110230 ttagttcacaagatgtgggctggagctcttgaaaggaagcgtgcaggagtaagtgacata 110289

                                                                          
Query: 389    tctgacaccatcaaggagaacaacaacaaatatcctggagagggacttcggagtcatcct 448
              ||| ||||| ||||  |||||||||||||||||| |||| ||||  |||||||  |  ||
Sbjct: 110290 tctcacaccgtcaacaagaacaacaacaaatatcttggacaggggtttcggagatactct 110349

                                                                          
Query: 449    cggatcactgtcgccatcaccagcctccctggggtcagctagcacggaaacaactaccga 508
              |||||| |  || |||| |||||||||||| || || |||||||| || ||||| || ||
Sbjct: 110350 cggatcgccatccccattaccagcctcccttggatcggctagcaccgagacaacaactga 110409

                                                                          
Query: 509    agatgctggcttcttatcaggtaact---tgctgctttcagaagttctgttaaaaggctc 565
               |||||||||||  ||||||||||||   ||||||||||||| |||||||||||||||||
Sbjct: 110410 tgatgctggcttgctatcaggtaacttgctgctgctttcagaggttctgttaaaaggctc 110469

                                                                          
Query: 566    tgtgttgttcaccgttttcccagtgagtggaatcgccgcctcattgtacatgatcctcct 625
              |||||||||| |||| ||||| |||||||||||   ||| |||||||||||||  || ||
Sbjct: 110470 tgtgttgttcgccgtcttcccggtgagtggaat---cgcttcattgtacatgactcttct 110526

                                        
Query: 626    attcttcagcttgccgtaataagcag 651
               || ||||||||||| | ||||||||
Sbjct: 110527 gtttttcagcttgccatgataagcag 110552



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                          
Query: 166    aaccttcgacaaacttgaattacctcaggccgagtgaatagaaagctctttccttggtta 225
              |||||||||||||||||||||||||||| | ||||| |||| ||| |   ||||||||||
Sbjct: 110104 aaccttcgacaaacttgaattacctcagcctgagtgcataggaagtttagtccttggtta 110163

                            
Query: 226    gacaacagcatcag 239
              |  |||||||||||
Sbjct: 110164 ggaaacagcatcag 110177
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  226 bits (114), Expect = 8e-56
 Identities = 274/326 (84%), Gaps = 6/326 (1%)
 Strand = Plus / Plus

                                                                            
Query: 329      ttagtttacaagatgaggactggcactcttgaaaggaagagtgcaggagtatgtgacata 388
                |||||| |||||||| || ||||  |||||||||||||| ||||||||||| ||||||||
Sbjct: 19969066 ttagttcacaagatgtgggctggagctcttgaaaggaagcgtgcaggagtaagtgacata 19969125

                                                                            
Query: 389      tctgacaccatcaaggagaacaacaacaaatatcctggagagggacttcggagtcatcct 448
                ||| ||||| ||||  |||||||||||||||||| |||| ||||  |||||||  |  ||
Sbjct: 19969126 tctcacaccgtcaacaagaacaacaacaaatatcttggacaggggtttcggagatactct 19969185

                                                                            
Query: 449      cggatcactgtcgccatcaccagcctccctggggtcagctagcacggaaacaactaccga 508
                |||||| |  || |||| |||||||||||| || || |||||||| || ||||| || ||
Sbjct: 19969186 cggatcgccatccccattaccagcctcccttggatcggctagcaccgagacaacaactga 19969245

                                                                            
Query: 509      agatgctggcttcttatcaggtaact---tgctgctttcagaagttctgttaaaaggctc 565
                 |||||||||||  ||||||||||||   ||||||||||||| |||||||||||||||||
Sbjct: 19969246 tgatgctggcttgctatcaggtaacttgctgctgctttcagaggttctgttaaaaggctc 19969305

                                                                            
Query: 566      tgtgttgttcaccgttttcccagtgagtggaatcgccgcctcattgtacatgatcctcct 625
                |||||||||| |||| ||||| |||||||||||   ||| |||||||||||||  || ||
Sbjct: 19969306 tgtgttgttcgccgtcttcccggtgagtggaat---cgcttcattgtacatgactcttct 19969362

                                          
Query: 626      attcttcagcttgccgtaataagcag 651
                 || ||||||||||| | ||||||||
Sbjct: 19969363 gtttttcagcttgccatgataagcag 19969388



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Plus

                                                                            
Query: 166      aaccttcgacaaacttgaattacctcaggccgagtgaatagaaagctctttccttggtta 225
                |||||||||||||||||||||||||||| | ||||| |||| ||| |   ||||||||||
Sbjct: 19968940 aaccttcgacaaacttgaattacctcagcctgagtgcataggaagtttagtccttggtta 19968999

                              
Query: 226      gacaacagcatcag 239
                |  |||||||||||
Sbjct: 19969000 ggaaacagcatcag 19969013
to top
>dbj|AK073142.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024D10, full
            insert sequence
          Length = 2461

 Score =  226 bits (114), Expect = 8e-56
 Identities = 274/326 (84%), Gaps = 6/326 (1%)
 Strand = Plus / Minus

                                                                        
Query: 329  ttagtttacaagatgaggactggcactcttgaaaggaagagtgcaggagtatgtgacata 388
            |||||| |||||||| || ||||  |||||||||||||| ||||||||||| ||||||||
Sbjct: 2110 ttagttcacaagatgtgggctggagctcttgaaaggaagcgtgcaggagtaagtgacata 2051

                                                                        
Query: 389  tctgacaccatcaaggagaacaacaacaaatatcctggagagggacttcggagtcatcct 448
            ||| ||||| ||||  |||||||||||||||||| |||| ||||  |||||||  |  ||
Sbjct: 2050 tctcacaccgtcaacaagaacaacaacaaatatcttggacaggggtttcggagatactct 1991

                                                                        
Query: 449  cggatcactgtcgccatcaccagcctccctggggtcagctagcacggaaacaactaccga 508
            |||||| |  || |||| |||||||||||| || || |||||||| || ||||| || ||
Sbjct: 1990 cggatcgccatccccattaccagcctcccttggatcggctagcaccgagacaacaactga 1931

                                                                        
Query: 509  agatgctggcttcttatcaggtaact---tgctgctttcagaagttctgttaaaaggctc 565
             |||||||||||  ||||||||||||   ||||||||||||| |||||||||||||||||
Sbjct: 1930 tgatgctggcttgctatcaggtaacttgctgctgctttcagaggttctgttaaaaggctc 1871

                                                                        
Query: 566  tgtgttgttcaccgttttcccagtgagtggaatcgccgcctcattgtacatgatcctcct 625
            |||||||||| |||| ||||| |||||||||||   ||| |||||||||||||  || ||
Sbjct: 1870 tgtgttgttcgccgtcttcccggtgagtggaat---cgcttcattgtacatgactcttct 1814

                                      
Query: 626  attcttcagcttgccgtaataagcag 651
             || ||||||||||| | ||||||||
Sbjct: 1813 gtttttcagcttgccatgataagcag 1788



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 166  aaccttcgacaaacttgaattacctcaggccgagtgaatagaaagctctttccttggtta 225
            |||||||||||||||||||||||||||| | ||||| |||| ||| |   ||||||||||
Sbjct: 2236 aaccttcgacaaacttgaattacctcagcctgagtgcataggaagtttagtccttggtta 2177

                          
Query: 226  gacaacagcatcag 239
            |  |||||||||||
Sbjct: 2176 ggaaacagcatcag 2163
to top
>dbj|AK058751.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-H09, full
           insert sequence
          Length = 778

 Score =  226 bits (114), Expect = 8e-56
 Identities = 274/326 (84%), Gaps = 6/326 (1%)
 Strand = Plus / Minus

                                                                       
Query: 329 ttagtttacaagatgaggactggcactcttgaaaggaagagtgcaggagtatgtgacata 388
           |||||| |||||||| || ||||  |||||||||||||| ||||||||||| ||||||||
Sbjct: 465 ttagttcacaagatgtgggctggagctcttgaaaggaagcgtgcaggagtaagtgacata 406

                                                                       
Query: 389 tctgacaccatcaaggagaacaacaacaaatatcctggagagggacttcggagtcatcct 448
           ||| ||||| ||||  |||||||||||||||||| |||| ||||  |||||||  |  ||
Sbjct: 405 tctcacaccgtcaacaagaacaacaacaaatatcttggacaggggtttcggagatactct 346

                                                                       
Query: 449 cggatcactgtcgccatcaccagcctccctggggtcagctagcacggaaacaactaccga 508
           |||||| |  || |||| |||||||||||| || || |||||||| || ||||| || ||
Sbjct: 345 cggatcgccatccccattaccagcctcccttggatcggctagcaccgagacaacaactga 286

                                                                       
Query: 509 agatgctggcttcttatcaggtaact---tgctgctttcagaagttctgttaaaaggctc 565
            |||||||||||  ||||||||||||   ||||||||||||| |||||||||||||||||
Sbjct: 285 tgatgctggcttgctatcaggtaacttgctgctgctttcagaggttctgttaaaaggctc 226

                                                                       
Query: 566 tgtgttgttcaccgttttcccagtgagtggaatcgccgcctcattgtacatgatcctcct 625
           |||||||||| |||| ||||| |||||||||||   ||| |||||||||||||  || ||
Sbjct: 225 tgtgttgttcgccgtcttcccggtgagtggaat---cgcttcattgtacatgactcttct 169

                                     
Query: 626 attcttcagcttgccgtaataagcag 651
            || ||||||||||| | ||||||||
Sbjct: 168 gtttttcagcttgccatgataagcag 143



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                       
Query: 166 aaccttcgacaaacttgaattacctcaggccgagtgaatagaaagctctttccttggtta 225
           |||||||||||||||||||||||||||| | ||||| |||| ||| |   ||||||||||
Sbjct: 591 aaccttcgacaaacttgaattacctcagcctgagtgcataggaagtttagtccttggtta 532

                         
Query: 226 gacaacagcatcag 239
           |  |||||||||||
Sbjct: 531 ggaaacagcatcag 518
to top
>dbj|AK071931.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013081D14, full
            insert sequence
          Length = 1544

 Score =  107 bits (54), Expect = 5e-20
 Identities = 126/150 (84%)
 Strand = Plus / Minus

                                                                        
Query: 329  ttagtttacaagatgaggactggcactcttgaaaggaagagtgcaggagtatgtgacata 388
            |||||| |||||||| || ||||  |||||||||||||| ||||||||||| ||||||||
Sbjct: 1226 ttagttcacaagatgtgggctggagctcttgaaaggaagcgtgcaggagtaagtgacata 1167

                                                                        
Query: 389  tctgacaccatcaaggagaacaacaacaaatatcctggagagggacttcggagtcatcct 448
            ||| ||||| ||||  |||||||||||||||||| |||| ||||  |||||||  |  ||
Sbjct: 1166 tctcacaccgtcaacaagaacaacaacaaatatcttggacaggggtttcggagatactct 1107

                                          
Query: 449  cggatcactgtcgccatcaccagcctccct 478
            |||||| |  || |||| ||||||||||||
Sbjct: 1106 cggatcgccatccccattaccagcctccct 1077



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 166  aaccttcgacaaacttgaattacctcaggccgagtgaatagaaagctctttccttggtta 225
            |||||||||||||||||||||||||||| | ||||| |||| ||| |   ||||||||||
Sbjct: 1352 aaccttcgacaaacttgaattacctcagcctgagtgcataggaagtttagtccttggtta 1293

                          
Query: 226  gacaacagcatcag 239
            |  |||||||||||
Sbjct: 1292 ggaaacagcatcag 1279
to top
>gb|AY107815.1| Zea mays PCO096780 mRNA sequence
          Length = 814

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 113/138 (81%), Gaps = 9/138 (6%)
 Strand = Plus / Minus

                                                                       
Query: 523 tatcaggtaacttgctgctttcagaagttctgttaaaag------gctctgtgttgttca 576
           ||||||||| |||||||||||||| ||| ||||||||||      ||| |||||||||| 
Sbjct: 547 tatcaggtaccttgctgctttcagcagtactgttaaaagcctgaggctttgtgttgttcg 488

                                                                       
Query: 577 ccgttttcccagtgagtggaatcgccgcctcattgtacatgatcctcctattcttcagct 636
           | ||||| ||||| |||||||| |||   || || |||||||||||||| || |||||||
Sbjct: 487 ctgtttttccagtaagtggaattgcc---tcgttatacatgatcctcctgtttttcagct 431

                             
Query: 637 tgccgtaataagcaggag 654
           ||||   |||||||||||
Sbjct: 430 tgcccctataagcaggag 413



 Score = 50.1 bits (25), Expect = 0.010
 Identities = 69/81 (85%), Gaps = 2/81 (2%)
 Strand = Plus / Minus

                                                                       
Query: 348 ctggcactcttgaaaggaagagtgcaggagtatgtgacatatctgacaccatc-aaggag 406
           |||||||||| |||||||||  |||| ||||| || || ||||||||||||||  || ||
Sbjct: 729 ctggcactct-gaaaggaagtttgcacgagtaagtcacgtatctgacaccatcggagcag 671

                                
Query: 407 aacaacaacaaatatcctgga 427
           ||| || ||||||||||||||
Sbjct: 670 aacgacgacaaatatcctgga 650
to top
>ref|XM_807466.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053509561.60) partial mRNA
          Length = 1083

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 542 ttcagaagttctgttaaaaggctctgtgt 570
           |||||||| |||| |||||||||||||||
Sbjct: 915 ttcagaaggtctggtaaaaggctctgtgt 887
to top
>ref|XM_809851.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053503897.130) partial mRNA
          Length = 1083

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 542 ttcagaagttctgttaaaaggctctgtgt 570
           |||||||| |||| |||||||||||||||
Sbjct: 915 ttcagaaggtctggtaaaaggctctgtgt 887
to top
>gb|AC129299.3| Mus musculus BAC clone RP24-420E16 from chromosome 14, complete
             sequence
          Length = 156372

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 407   aacaacaacaaatatcctgga 427
             |||||||||||||||||||||
Sbjct: 97309 aacaacaacaaatatcctgga 97289
to top
>gb|AC117602.9| Mus musculus chromosome 5, clone RP23-462C22, complete sequence
          Length = 205604

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 532    acttgctgctttcagaagttctgtt 556
              |||||||||||| ||||||||||||
Sbjct: 175935 acttgctgcttttagaagttctgtt 175911
to top
>gb|AE014178.1| Mus musculus piebald deletion region section 6 of 11 of the complete
              sequence
          Length = 400029

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 407    aacaacaacaaatatcctgga 427
              |||||||||||||||||||||
Sbjct: 103403 aacaacaacaaatatcctgga 103383
to top
>dbj|BA000038.2| Vibrio vulnificus YJ016 DNA, chromosome II, complete sequence
          Length = 1857073

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 645     taagcaggagctggtgttgga 665
               |||||||||||||||||||||
Sbjct: 1511132 taagcaggagctggtgttgga 1511112
to top
>gb|AC068726.5|AC068726 Homo sapiens chromosome 15 clone RP11-844G16 map 15q21.3, complete
              sequence
          Length = 189308

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 316    ccatgattatttgttagttta 336
              |||||||||||||||||||||
Sbjct: 181903 ccatgattatttgttagttta 181923
to top
>gb|AC084782.2|AC084782 Homo sapiens chromosome 15 clone RP11-48G14 map 15q21.3, complete
             sequence
          Length = 177862

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 316   ccatgattatttgttagttta 336
             |||||||||||||||||||||
Sbjct: 88683 ccatgattatttgttagttta 88703
to top
>gb|AC005519.3|AC005519 Homo sapiens PAC clone RP5-919J22 from 14q24.3, complete sequence
          Length = 163983

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 312  acccccatgattatttgttag 332
            |||||||||||||||||||||
Sbjct: 4747 acccccatgattatttgttag 4767
to top
>gb|AC005479.2|AC005479 Homo sapiens PAC clone RP3-449M8 from 14q24.3, complete sequence
          Length = 140425

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 312    acccccatgattatttgttag 332
              |||||||||||||||||||||
Sbjct: 123064 acccccatgattatttgttag 123084
to top
>gb|AC110921.9| Homo sapiens chromosome 17, clone CTD-2653B5, complete sequence
          Length = 240058

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 104   cagcacaaaaactgcactcat 124
             |||||||||||||||||||||
Sbjct: 61759 cagcacaaaaactgcactcat 61779
to top
>gb|AC116491.8| Homo sapiens chromosome 17, clone CTD-3089B9, complete sequence
          Length = 108879

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 104   cagcacaaaaactgcactcat 124
             |||||||||||||||||||||
Sbjct: 67874 cagcacaaaaactgcactcat 67854
to top
>gb|AC151910.4| Mus musculus BAC clone RP23-67A17 from 14, complete sequence
          Length = 207254

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 407    aacaacaacaaatatcctgga 427
              |||||||||||||||||||||
Sbjct: 205800 aacaacaacaaatatcctgga 205780
to top
>gb|AE016796.1| Vibrio vulnificus CMCP6 chromosome II, complete sequence
          Length = 1844853

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 645    taagcaggagctggtgttgga 665
              |||||||||||||||||||||
Sbjct: 969105 taagcaggagctggtgttgga 969085
to top
>gb|AC161427.4| Gallus gallus BAC clone CH261-60M14 from chromosome ul, complete
             sequence
          Length = 174770

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 540   ctttcagaagttctgttaaaa 560
             |||||||||||||||||||||
Sbjct: 77715 ctttcagaagttctgttaaaa 77735
to top
>gb|AC131670.5| Mus musculus BAC clone RP23-307I19 from 5, complete sequence
          Length = 197080

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 532    acttgctgctttcagaagttctgtt 556
              |||||||||||| ||||||||||||
Sbjct: 169005 acttgctgcttttagaagttctgtt 169029
to top
>gb|AC091333.6| Mus musculus chromosome 7, clone RP23-325M1, complete sequence
          Length = 192111

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 613   acatgatcctcctattcttc 632
             ||||||||||||||||||||
Sbjct: 88183 acatgatcctcctattcttc 88164
to top
>gb|AF535134.1| Schizosaccharomyces pombe thioredoxin reductase gene, complete cds
          Length = 3058

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 275  gccaataaagctgcttgagaacca 298
            |||||||||||||||||| |||||
Sbjct: 2752 gccaataaagctgcttgacaacca 2729
to top
>gb|AC115361.5| Mus musculus BAC clone RP24-76P12 from chromosome 8, complete sequence
          Length = 235095

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 649   caggagctggtgttggaatc 668
             ||||||||||||||||||||
Sbjct: 75875 caggagctggtgttggaatc 75856
to top
>gb|AC138549.3| Mus musculus BAC clone RP23-173C1 from chromosome 7, complete sequence
          Length = 203651

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 613   acatgatcctcctattcttc 632
             ||||||||||||||||||||
Sbjct: 88027 acatgatcctcctattcttc 88008
to top
>emb|Z93385.1|CEM01E5 Caenorhabditis elegans Cosmid M01E5, complete sequence
          Length = 27848

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 444   atcctcggatcactgtcgcc 463
             ||||||||||||||||||||
Sbjct: 23928 atcctcggatcactgtcgcc 23947
to top
>emb|AL031431.8|HS462O23 Human DNA sequence from clone RP3-462O23 on chromosome 1p35.1-36.12
             Contains the 3' end of the gene for sister-of-mammalian
             grainyhead (SOM), a novel gene (LOC90529) and a novel gene
             (DJ462O23.2), complete sequence
          Length = 154154

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 415   caaatatcctggagagggac 434
             ||||||||||||||||||||
Sbjct: 43834 caaatatcctggagagggac 43853
to top
>emb|X96762.1|CETOPOI C.elegans mRNA for DNA topoisomerase I
          Length = 3237

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 444  atcctcggatcactgtcgcc 463
            ||||||||||||||||||||
Sbjct: 2400 atcctcggatcactgtcgcc 2419
to top
>emb|AL022019.1|SPBC3F6 S.pombe chromosome II cosmid c3F6
          Length = 17311

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 275  gccaataaagctgcttgagaacca 298
            |||||||||||||||||| |||||
Sbjct: 6172 gccaataaagctgcttgacaacca 6149
to top
>emb|CR384103.7| Zebrafish DNA sequence from clone DKEY-215K6 in linkage group 5, complete
              sequence
          Length = 142808

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 532    acttgctgctttcagaagtt 551
              ||||||||||||||||||||
Sbjct: 130163 acttgctgctttcagaagtt 130144
to top
>gb|BC099344.1| Xenopus laevis cDNA clone MGC:116539 IMAGE:6940227, complete cds
          Length = 1694

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 368  agtgcaggagtatgtgacat 387
            ||||||||||||||||||||
Sbjct: 1585 agtgcaggagtatgtgacat 1566
to top
>ref|NM_001022668.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPBC3F6.03),
           partial mRNA
          Length = 969

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 275 gccaataaagctgcttgagaacca 298
           |||||||||||||||||| |||||
Sbjct: 932 gccaataaagctgcttgacaacca 909
to top
>ref|NM_001026407.2| Caenorhabditis elegans TOPoisomerase family member (top-1) (top-1)
            mRNA, complete cds
          Length = 2317

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 444  atcctcggatcactgtcgcc 463
            ||||||||||||||||||||
Sbjct: 2184 atcctcggatcactgtcgcc 2203
to top
>ref|NM_060936.4| Caenorhabditis elegans TOPoisomerase family member (top-1) (top-1)
            mRNA, complete cds
          Length = 3219

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 444  atcctcggatcactgtcgcc 463
            ||||||||||||||||||||
Sbjct: 2400 atcctcggatcactgtcgcc 2419
to top
>gb|AC027123.7| Homo sapiens chromosome 3 clone RP11-392M7 map 3p, complete sequence
          Length = 191566

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 537    ctgctttcagaagttctgtt 556
              ||||||||||||||||||||
Sbjct: 144812 ctgctttcagaagttctgtt 144831
to top
>dbj|AP001666.1| Homo sapiens genomic DNA, chromosome 21q, section 10/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 46     tattacattataacaacaag 65
              ||||||||||||||||||||
Sbjct: 316903 tattacattataacaacaag 316884
to top
>emb|BX470230.5| Zebrafish DNA sequence from clone CH211-284B12 in linkage group 4,
             complete sequence
          Length = 173564

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 139   gaaccacatttaactcacac 158
             ||||||||||||||||||||
Sbjct: 76196 gaaccacatttaactcacac 76177
to top
>gb|U63713.1|SPU63713 Schizosaccharomyces pombe thioredoxin reductase gene, complete cds
          Length = 2592

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 275  gccaataaagctgcttgagaacca 298
            |||||||||||||||||| |||||
Sbjct: 2212 gccaataaagctgcttgacaacca 2189
to top
>gb|AC142414.3| Mus musculus BAC clone RP23-372N15 from 8, complete sequence
          Length = 192261

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 649   caggagctggtgttggaatc 668
             ||||||||||||||||||||
Sbjct: 50029 caggagctggtgttggaatc 50048
to top
>dbj|AP001172.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:B812E1,
             LL56-APP region, complete sequence
          Length = 149114

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 46    tattacattataacaacaag 65
             ||||||||||||||||||||
Sbjct: 57983 tattacattataacaacaag 57964


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,284,389
Number of Sequences: 3902068
Number of extensions: 6284389
Number of successful extensions: 109539
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 109394
Number of HSP's gapped (non-prelim): 132
length of query: 688
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 665
effective length of database: 17,143,297,704
effective search space: 11400292973160
effective search space used: 11400292973160
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top