>UGDH_SOYBN (Q96558) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc|
           dehydrogenase) (UDP-GlcDH) (UDPGDH)
          Length = 480

 Score =  234 bits (598), Expect = 1e-61
 Identities = 105/121 (86%), Positives = 117/121 (96%)
 Frame = -3

Query: 561 ISIYDPQVTEDQIQRDLAMNKFDWDHPVHLQPMSPTTTKQVSVTWDAYEATKDAHGICIM 382
           +SIYDPQVTEDQIQRDL+MNKFDWDHP+HLQP SPTT K+VSV WDAYEATKDAHG+CI+
Sbjct: 360 LSIYDPQVTEDQIQRDLSMNKFDWDHPIHLQPTSPTTVKKVSVVWDAYEATKDAHGLCIL 419

Query: 381 TEWDEFKTLDYKKIYDSMQKPAFVFDGRNVVDSEKLREIGFIVYSIGKPLDGWLKDMPAV 202
           TEWDEFKTLDY+KI+D+MQKPAFVFDGRN+VD++KLREIGFIVYSIGKPLD WLKDMPAV
Sbjct: 420 TEWDEFKTLDYQKIFDNMQKPAFVFDGRNIVDADKLREIGFIVYSIGKPLDPWLKDMPAV 479

Query: 201 A 199
           A
Sbjct: 480 A 480

>UGDH_DROME (O02373) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc|
           dehydrogenase) (UDP-GlcDH) (UDPGDH) (Protein sugarless)
          Length = 476

 Score = 94.4 bits (233), Expect = 2e-19
 Identities = 50/109 (45%), Positives = 68/109 (62%), Gaps = 1/109 (0%)
 Frame = -3

Query: 561 ISIYDPQVTEDQIQRDLAMNKFDWDHPVHLQPMSPTTTKQ-VSVTWDAYEATKDAHGICI 385
           + IYDP+V  +QI  DL        HP   +  SP   K+ V +  D Y A +  H + I
Sbjct: 360 LDIYDPKVEPEQIIDDLT-------HPSVTE--SPEKVKKAVQIHSDPYSAVRATHALVI 410

Query: 384 MTEWDEFKTLDYKKIYDSMQKPAFVFDGRNVVDSEKLREIGFIVYSIGK 238
            TEWDEF  LD+K+IY SM KPA++FDGR ++D E+L++IGF V +IGK
Sbjct: 411 CTEWDEFVDLDFKRIYQSMMKPAYIFDGRKILDHERLQQIGFHVQTIGK 459

>UGDH_CAEEL (Q19905) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc|
           dehydrogenase) (UDP-GlcDH) (UDPGDH) (Squashed vulva
           protein 4)
          Length = 481

 Score = 86.3 bits (212), Expect = 6e-17
 Identities = 44/111 (39%), Positives = 65/111 (58%)
 Frame = -3

Query: 561 ISIYDPQVTEDQIQRDLAMNKFDWDHPVHLQPMSPTTTKQVSVTWDAYEATKDAHGICIM 382
           +S+YDP+V + Q+  DLA      D             + ++V  D Y A + AH I ++
Sbjct: 371 LSVYDPKVQKSQMLNDLASVTSAQD-----------VERLITVESDPYAAARGAHAIVVL 419

Query: 381 TEWDEFKTLDYKKIYDSMQKPAFVFDGRNVVDSEKLREIGFIVYSIGKPLD 229
           TEWDEF  L+Y +I++ MQ PA +FDGR ++D + LREIGF  ++IG   D
Sbjct: 420 TEWDEFVELNYSQIHNDMQHPAAIFDGRLILDQKALREIGFRTFAIGTSPD 470

>UGDH_HUMAN (O60701) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc|
           dehydrogenase) (UDP-GlcDH) (UDPGDH)
          Length = 494

 Score = 85.5 bits (210), Expect = 9e-17
 Identities = 47/110 (42%), Positives = 66/110 (60%), Gaps = 2/110 (1%)
 Frame = -3

Query: 561 ISIYDPQVTEDQIQRDLAMNKFDWDHPVHLQPMSPTTTKQVSVTWDAYEATKDAHGICIM 382
           + IYDP+V  +QI  DL+      D  V         ++ V+++ D YEA   AH + I 
Sbjct: 364 LHIYDPKVPREQIVVDLSHPGVSEDDQV---------SRLVTISKDPYEACDGAHAVVIC 414

Query: 381 TEWDEFKTLDYKKIYDSMQKPAFVFDGRNVVDS--EKLREIGFIVYSIGK 238
           TEWD FK LDY++I+  M KPAF+FDGR V+D    +L+ IGF + +IGK
Sbjct: 415 TEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464

>UGDH_MOUSE (O70475) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc|
           dehydrogenase) (UDP-GlcDH) (UDPGDH)
          Length = 493

 Score = 85.1 bits (209), Expect = 1e-16
 Identities = 47/110 (42%), Positives = 66/110 (60%), Gaps = 2/110 (1%)
 Frame = -3

Query: 561 ISIYDPQVTEDQIQRDLAMNKFDWDHPVHLQPMSPTTTKQVSVTWDAYEATKDAHGICIM 382
           + IYDP+V  +QI  DL+      D  V         ++ V+++ D YEA   AH + I 
Sbjct: 364 LHIYDPKVPREQIVVDLSHPGVSADDQV---------SRLVTISKDPYEACDGAHALVIC 414

Query: 381 TEWDEFKTLDYKKIYDSMQKPAFVFDGRNVVDS--EKLREIGFIVYSIGK 238
           TEWD FK LDY++I+  M KPAF+FDGR V+D    +L+ IGF + +IGK
Sbjct: 415 TEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHSELQTIGFQIETIGK 464

>UGDH_BOVIN (P12378) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc|
           dehydrogenase) (UDP-GlcDH) (UDPGDH)
          Length = 494

 Score = 85.1 bits (209), Expect = 1e-16
 Identities = 47/110 (42%), Positives = 65/110 (59%), Gaps = 2/110 (1%)
 Frame = -3

Query: 561 ISIYDPQVTEDQIQRDLAMNKFDWDHPVHLQPMSPTTTKQVSVTWDAYEATKDAHGICIM 382
           + IYDP+V  +QI  DL+      D  V          + V+++ D YEA   AH + I 
Sbjct: 364 LHIYDPKVPREQIVVDLSHPGVSKDDQV---------ARLVTISKDPYEACDGAHAVVIC 414

Query: 381 TEWDEFKTLDYKKIYDSMQKPAFVFDGRNVVDS--EKLREIGFIVYSIGK 238
           TEWD FK LDY++I+  M KPAF+FDGR V+D    +L+ IGF + +IGK
Sbjct: 415 TEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464

>UGDH_RAT (O70199) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc|
           dehydrogenase) (UDP-GlcDH) (UDPGDH)
          Length = 493

 Score = 84.7 bits (208), Expect = 2e-16
 Identities = 47/110 (42%), Positives = 66/110 (60%), Gaps = 2/110 (1%)
 Frame = -3

Query: 561 ISIYDPQVTEDQIQRDLAMNKFDWDHPVHLQPMSPTTTKQVSVTWDAYEATKDAHGICIM 382
           + IYDP+V  +QI  DL+      D  V         ++ V+++ D YEA   AH + I 
Sbjct: 364 LHIYDPKVPREQIVVDLSHPGVSADDQV---------SRLVTISKDPYEACDGAHALVIC 414

Query: 381 TEWDEFKTLDYKKIYDSMQKPAFVFDGRNVVDS--EKLREIGFIVYSIGK 238
           TEWD FK LDY++I+  M KPAF+FDGR V+D    +L+ IGF + +IGK
Sbjct: 415 TEWDMFKELDYERIHKRMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464

>UDG_RICCN (Q92GB1) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc|
           dehydrogenase) (UDP-GlcDH) (UDPGDH)
          Length = 432

 Score = 58.2 bits (139), Expect = 2e-08
 Identities = 32/99 (32%), Positives = 57/99 (57%), Gaps = 1/99 (1%)
 Frame = -3

Query: 525 IQRDLAMNKFDWDHPVHLQPMSPTTTKQVSVTWD-AYEATKDAHGICIMTEWDEFKTLDY 349
           + +D+ +  FD   P+ L+        +  +  D A +A K    I I TEW EFK L++
Sbjct: 338 LNKDVYVKAFD---PIGLENAKKNLEHKNLLYLDSAVDACKSVDIIVIATEWSEFKELNW 394

Query: 348 KKIYDSMQKPAFVFDGRNVVDSEKLREIGFIVYSIGKPL 232
           ++IYD ++ P  + D RN++D+E +++IGF  Y++G  +
Sbjct: 395 QEIYDLVKSP-IIIDFRNILDNETMKKIGFRYYAVGSKI 432

>UDG_RICPR (O05973) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc|
           dehydrogenase) (UDP-GlcDH) (UDPGDH)
          Length = 434

 Score = 56.6 bits (135), Expect = 5e-08
 Identities = 32/99 (32%), Positives = 56/99 (56%), Gaps = 1/99 (1%)
 Frame = -3

Query: 525 IQRDLAMNKFDWDHPVHLQPMSPTTT-KQVSVTWDAYEATKDAHGICIMTEWDEFKTLDY 349
           + +D+ +  FD   P+ L+        K +     A EA K    I I TEW EFK L++
Sbjct: 340 LNKDVYVKAFD---PIGLENAKKNLEHKNLLYFASAVEACKSVDIIVIATEWSEFKELNW 396

Query: 348 KKIYDSMQKPAFVFDGRNVVDSEKLREIGFIVYSIGKPL 232
           ++IY+ ++ P  + D RN++D+E +++IGF  Y++G  +
Sbjct: 397 QEIYNLVKSP-MIIDLRNILDNEVMKKIGFRYYAVGSQI 434

>TUAD_BACSU (O32271) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc|
           dehydrogenase) (UDP-GlcDH) (UDPGDH) (Teichuronic acid
           biosynthesis protein tuaD)
          Length = 461

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 26/83 (31%), Positives = 46/83 (55%)
 Frame = -3

Query: 483 PVHLQPMSPTTTKQVSVTWDAYEATKDAHGICIMTEWDEFKTLDYKKIYDSMQKPAFVFD 304
           P+ +   S    +QV    D Y A +D     I+T+W E K ++  K+   +++P  + D
Sbjct: 351 PIAIPEASAILGEQVEYYTDVYAAMEDTDACLILTDWPEVKEMELVKVKTLLKQPV-IID 409

Query: 303 GRNVVDSEKLREIGFIVYSIGKP 235
           GRN+   E+++  G+I +SIG+P
Sbjct: 410 GRNLFSLEEMQAAGYIYHSIGRP 432

>UDG_PSEAE (O86422) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc|
           dehydrogenase) (UDP-GlcDH) (UDPGDH)
          Length = 453

 Score = 55.5 bits (132), Expect = 1e-07
 Identities = 27/68 (39%), Positives = 41/68 (60%)
 Frame = -3

Query: 420 YEATKDAHGICIMTEWDEFKTLDYKKIYDSMQKPAFVFDGRNVVDSEKLREIGFIVYSIG 241
           Y A + A  + ++TEW +F+  D++KI  SM+ P  V DGRN+    ++ E+GFI   IG
Sbjct: 383 YAAVEGADALVLVTEWKQFRQPDFQKIRGSMRTPLLV-DGRNLYAPARMAELGFIYQGIG 441

Query: 240 KPLDGWLK 217
           +P  G  K
Sbjct: 442 RPRAGHCK 449

>Y1054_METJA (Q58454) Hypothetical protein MJ1054 (EC 1.1.1.-) [Contains: Mja|
            UDPGD intein]
          Length = 895

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 27/63 (42%), Positives = 41/63 (65%)
 Frame = -3

Query: 426  DAYEATKDAHGICIMTEWDEFKTLDYKKIYDSMQKPAFVFDGRNVVDSEKLREIGFIVYS 247
            D YE  K+  GI I  E+D F   D++KI  ++ K   VFDGRN++D EK++++GF  Y 
Sbjct: 835  DLYETVKNVDGIIITVEYD-FNKEDWEKI-GNLVKEKVVFDGRNILDVEKIKKLGFKYYG 892

Query: 246  IGK 238
            +G+
Sbjct: 893  VGR 895

>UDG_RHIME (O54068) UDP-glucose 6-dehydrogenase (EC 1.1.1.22) (UDP-Glc|
           dehydrogenase) (UDP-GlcDH) (UDPGDH)
          Length = 437

 Score = 53.5 bits (127), Expect = 4e-07
 Identities = 25/64 (39%), Positives = 41/64 (64%)
 Frame = -3

Query: 426 DAYEATKDAHGICIMTEWDEFKTLDYKKIYDSMQKPAFVFDGRNVVDSEKLREIGFIVYS 247
           D YEA  +A  + I+TEW+EF+ LD+ ++  +M+ P  V D RN+   +++ + GF   S
Sbjct: 374 DPYEAAAEADALVIITEWNEFRALDFDRLKSTMKTPLLV-DLRNIYRKDEVAKHGFRYAS 432

Query: 246 IGKP 235
           IG+P
Sbjct: 433 IGRP 436

>TGT_CAUCR (Q9A7Y1) Queuine tRNA-ribosyltransferase (EC 2.4.2.29)|
           (tRNA-guanine transglycosylase) (Guanine insertion
           enzyme)
          Length = 371

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
 Frame = -3

Query: 435 VTWDAYEATKDAHGICIMTEW-----DEFKTLDYKKIYDSMQKPAFVFDGRNVVDSEKLR 271
           V W A EA +   G+ +   W     D F T D + ++   Q     F+      SE+LR
Sbjct: 150 VAWPAEEA-RARKGMELSARWAKRSKDAFGTRDTQVLFGIQQ--GSTFENLRRESSERLR 206

Query: 270 EIGFIVYSIG 241
           EIGF  Y+IG
Sbjct: 207 EIGFDGYAIG 216

>PNP_BUCAI (P57454) Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8)|
           (Polynucleotide phosphorylase) (PNPase)
          Length = 707

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 9/134 (6%)
 Frame = +1

Query: 157 FTRGGSPPSIRVYLSHSRHVLEPTVEWLANGVDN---ESNFP--ELLRVNNIAAIKNK-- 315
           FTRG +   + V L  SR   +   E L + +DN     NFP   +  +  + + K +  
Sbjct: 343 FTRGETQSLVSVTLGTSRDA-QNLDELLGDRIDNFLFHYNFPPYSVGEIGMVGSPKRREI 401

Query: 316 --GRLLHAVIDLLVVKSLELIPLSHDADAMGILGRLIRIPGNRDLLCSCGAHWLEMDRVV 489
             GRL    + L V+ +LE  P +     + ++  +    G+  +   CGA    MD  V
Sbjct: 402 GHGRLAKRSL-LAVMPTLENFPYT-----IRVVSEITESNGSSSMASVCGASLALMDAGV 455

Query: 490 PVKFVHRKVTLDLV 531
           P+K     +++ LV
Sbjct: 456 PIKSAVAGISMGLV 469

>MRAW_BIFLO (Q8G4R0) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)|
          Length = 359

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
 Frame = +1

Query: 271 PELLRVNNIAAIKNKGRLLHAVIDLLVVKSLELIPLSHDADAMGILGRLIRIPGNRDLLC 450
           P L   N IA     G   H++  L       LI +  D++A+G+    +   G  D   
Sbjct: 22  PALEHENAIAVDCTLGLAGHSIAFLKAAPQARLIGIDRDSEALGLATERMEREGLADRFI 81

Query: 451 SCGAHWLEMDRVVPVKFVHR--KVTLDLVFSHLRIINAD 561
              A + ++D+V+  + + R   V +DL  S L+I   D
Sbjct: 82  PVHAAFDQLDQVLADQDIERVDAVFMDLGLSSLQIDETD 120

>DPO3_CLOPE (Q8XJR3) DNA polymerase III polC-type (EC 2.7.7.7) (PolIII)|
          Length = 1449

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -3

Query: 354 DYKKIYDSMQKPAFVFDGRNVVDSEKLREIGFIVYSIGKPLD 229
           DY +I   +Q   F+    NV D E+LRE+   +Y +GK +D
Sbjct: 702 DYLEI-QPIQNNEFLIRKGNVKDEEELRELNRKIYDLGKEMD 742

>ARGD_VIBPA (Q87L20) Acetylornithine aminotransferase (EC 2.6.1.11) (ACOAT)|
          Length = 403

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
 Frame = +1

Query: 127 AESL*IAAHGFTRGGSPPSIRVYLSHSRHVLEPTVEWLANGVDNESNFPELL-----RVN 291
           AE L +  HG T GG+P +  V  +    V +P V  LA  ++ E+ F   L     + N
Sbjct: 272 AEHLKVGTHGSTYGGNPLACAVAEAVVNEVTKPEV--LAGVLEREALFRAGLEKINAKYN 329

Query: 292 NIAAIKNKGRLLHAVID 342
             + ++ KG LL A ++
Sbjct: 330 LFSEVRGKGLLLGAALN 346


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,038,880
Number of Sequences: 219361
Number of extensions: 1779125
Number of successful extensions: 5280
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5078
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5266
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4643056080
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)