ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags1c24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC131951.1| Homo sapiens BAC clone RP11-452L12 from 4, comple... 40 1.2
2emb|BX088693.15| Zebrafish DNA sequence from clone CH211-212E22 ... 38 4.9
3gb|AC158747.3| Mus musculus chromosome 15, clone RP24-248P22, co... 38 4.9
4gb|AC105969.17| Mus musculus chromosome 15, clone RP23-477B23, c... 38 4.9
5emb|AL672306.11| Mouse DNA sequence from clone RP23-149O3 on chr... 38 4.9

>gb|AC131951.1| Homo sapiens BAC clone RP11-452L12 from 4, complete sequence
          Length = 138872

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 71    tccaattccaatagggatatatat 94
             ||||||||||||||||||| ||||
Sbjct: 57027 tccaattccaatagggataaatat 57050



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>emb|BX088693.15| Zebrafish DNA sequence from clone CH211-212E22 in linkage group 2,
             complete sequence
          Length = 150021

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 4     cacacatataatgagggtt 22
             |||||||||||||||||||
Sbjct: 73288 cacacatataatgagggtt 73270



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>gb|AC158747.3| Mus musculus chromosome 15, clone RP24-248P22, complete sequence
          Length = 156293

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 6     cacatataatgagggttcc 24
             |||||||||||||||||||
Sbjct: 81372 cacatataatgagggttcc 81354



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>gb|AC105969.17| Mus musculus chromosome 15, clone RP23-477B23, complete sequence
          Length = 189238

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 6     cacatataatgagggttcc 24
             |||||||||||||||||||
Sbjct: 49895 cacatataatgagggttcc 49913



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>emb|AL672306.11| Mouse DNA sequence from clone RP23-149O3 on chromosome X, complete
              sequence
          Length = 211871

 Score = 38.2 bits (19), Expect = 4.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 10     tataatgagggttccagga 28
              |||||||||||||||||||
Sbjct: 159721 tataatgagggttccagga 159739


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 451,937
Number of Sequences: 3902068
Number of extensions: 451937
Number of successful extensions: 31699
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31689
Number of HSP's gapped (non-prelim): 10
length of query: 109
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 88
effective length of database: 17,151,101,840
effective search space: 1509296961920
effective search space used: 1509296961920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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