ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags1c22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TYDP_CAEEL (Q9TXV7) Probable tyrosyl-DNA phosphodiesterase (EC 3... 32 2.2
2DCAM_PEA (Q43820) S-adenosylmethionine decarboxylase proenzyme (... 30 5.0
3OPGH_BRAJA (Q89BU5) Glucans biosynthesis glucosyltransferase H (... 30 5.0
4ARAD_BACHD (Q9KBQ4) L-ribulose-5-phosphate 4-epimerase (EC 5.1.3... 30 8.5

>TYDP_CAEEL (Q9TXV7) Probable tyrosyl-DNA phosphodiesterase (EC 3.1.4.-)|
           (Tyr-DNA phosphodiesterase)
          Length = 451

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -3

Query: 261 TRGCWIIDKCSLMGTLTKIPISWERGQ*HASEEPVN 154
           T  C  + +CS +G+L   PI+W RGQ   S E  N
Sbjct: 255 TERCTFVAQCSSIGSLGSAPINWFRGQFLQSLEGAN 290



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>DCAM_PEA (Q43820) S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50)|
           (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine
           decarboxylase alpha chain; S-adenosylmethionine
           decarboxylase beta chain]
          Length = 353

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 21/58 (36%), Positives = 27/58 (46%)
 Frame = -2

Query: 439 EIDVTAGFYVLFGSGLVLSFILAIYVLQSSQEKLTRFVREAVSDSSLPEGGVAKVE*C 266
           E+ V  GF+   GSG +       Y+L  S E     +  A SDS  PEG V  +E C
Sbjct: 132 EVAVLDGFFGKLGSGSMA------YILGGSDEAQNWHIYCASSDSVSPEGSVYTLEMC 183



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>OPGH_BRAJA (Q89BU5) Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-)|
          Length = 748

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 24/83 (28%), Positives = 40/83 (48%)
 Frame = -2

Query: 577 LGSLVANPSVFHWAVVELHPDIKKNFWDQQNWPKYVLVSYTWEEQSEIDVTAGFYVLFGS 398
           +GS V  P    + +V L   ++ +F   + +PK   +  TW +Q  +     F    G 
Sbjct: 444 IGSYVTAPLWLLFLLVGLLISLQAHFIRPEYFPKGFSLFPTWPQQDPVLAAWVFAATMGL 503

Query: 397 GLVLSFILAIYVLQSSQEKLTRF 329
            L+L  +LA  VL S++E+ T F
Sbjct: 504 -LILPKLLAYLVLISNREERTGF 525



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>ARAD_BACHD (Q9KBQ4) L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)|
           (Phosphoribulose isomerase)
          Length = 231

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -2

Query: 481 PKYVLVSYTWEEQSEIDVTAGFYVLFGSGL 392
           PKY LV++TW   S ID   G  V+  SG+
Sbjct: 17  PKYQLVTFTWGNVSGIDREKGLVVIKPSGV 46


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,701,534
Number of Sequences: 219361
Number of extensions: 2068434
Number of successful extensions: 4845
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4844
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6427774254
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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