ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags1c22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK106195.1| Oryza sativa (japonica cultivar-group) cDNA clon... 283 4e-73
2dbj|AK069800.1| Oryza sativa (japonica cultivar-group) cDNA clon... 283 4e-73
3gb|AY105479.1| Zea mays PCO072018 mRNA sequence 270 5e-69
4gb|AC144741.3| Oryza sativa (japonica cultivar-group) chromosome... 107 5e-20
5gb|AC084817.5| Oryza sativa (japonica cultivar-group) chromosome... 107 5e-20
6dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 107 5e-20
7ref|NM_115020.2| Arabidopsis thaliana unknown protein AT3G51610 ... 60 1e-05
8gb|AY136426.1| Arabidopsis thaliana putative protein (At3g51610)... 60 1e-05
9gb|BT006266.1| Arabidopsis thaliana At3g51610 mRNA, complete cds 60 1e-05
10emb|BX825014.1|CNS0A6YE Arabidopsis thaliana Full-length cDNA Co... 60 1e-05
11gb|AY088686.1| Arabidopsis thaliana clone 9188 mRNA, complete se... 60 1e-05
12emb|AJ238805.1|ATH238805 Arabidopsis thaliana mRNA for hypotheti... 60 1e-05
13emb|AL929033.7| Mouse DNA sequence from clone RP23-427N17 on chr... 48 0.037
14gb|U50363.1|HRU50363 Human respiratory syncytial virus, mutant c... 46 0.15
15gb|U50362.1|HRU50362 Human respiratory syncytial virus, mutant c... 46 0.15
16gb|AY911262.1| Human respiratory syncytial virus strain ATCC VR-... 46 0.15
17gb|AF254574.1|AF254574 Human respiratory syncytial virus M2 gene... 46 0.15
18gb|U63644.1|HRU63644 Human respiratory syncytial virus, mutant c... 46 0.15
19gb|U27298.1|HRU27298 Human respiratory syncytial virus RNA-depen... 46 0.15
20gb|M74568.1|RSHSEQ Human respiratory syncytial virus nonstructur... 46 0.15
21gb|M75730.1|RSHPOLLA Human respiratory syncytial virus polymeras... 46 0.15
22gb|AF035006.1| Human respiratory syncytial virus, recombinant mu... 44 0.58
23gb|AC103778.2| Homo sapiens chromosome 8, clone RP11-463C14, com... 44 0.58
24gb|AC154438.2| Mus musculus BAC clone RP23-178P20 from 16, compl... 42 2.3
25emb|CT025592.14| Mouse DNA sequence from clone RP23-431J17 on ch... 42 2.3
26gb|AC093353.11| Mus musculus chromosome 10, clone RP23-19C22, co... 40 9.1
27gb|AC112675.12| Mus musculus chromosome 1, clone RP23-138J12, co... 40 9.1
28gb|AC124415.4| Mus musculus BAC clone RP24-298J2 from chromosome... 40 9.1
29gb|AC079416.4| Homo sapiens chromosome 16 clone RP11-454F8, comp... 40 9.1
30ref|XM_808998.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 9.1
31gb|AC183502.5| Medicago truncatula clone mth2-75g17, complete se... 40 9.1
32gb|AC151666.15| Medicago truncatula clone mth2-30n15, complete s... 40 9.1
33gb|AC157534.12| Medicago truncatula clone mth2-50p19, complete s... 40 9.1
34gb|AE008819.1| Salmonella typhimurium LT2, section 123 of 220 of... 40 9.1
35gb|AE008743.2| Salmonella typhimurium LT2, section 49 of 220 of ... 40 9.1
36emb|AL627268.1| Salmonella enterica serovar Typhi (Salmonella ty... 40 9.1
37emb|AL031824.1|SPCC31H12 S.pombe chromosome III cosmid c31H12 40 9.1
38gb|AC154397.8| Mus musculus chromosome 7, clone RP23-53N23, comp... 40 9.1
39emb|AL928651.13| Mouse DNA sequence from clone RP23-167A19 on ch... 40 9.1
40gb|AC005560.3| Arabidopsis thaliana chromosome 2 clone F2I9 map ... 40 9.1
41gb|DP000032.1| Felis catus target 116 genomic scaffold 40 9.1
42gb|AC137146.9| Mus musculus chromosome 1, clone RP24-358I14, com... 40 9.1
43dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
44gb|AC013449.8| Homo sapiens BAC clone RP11-558C24 from 2, comple... 40 9.1
45gb|AC154803.2| Mus musculus BAC clone RP24-505I19 from chromosom... 40 9.1
46gb|AC007906.8| Homo sapiens chromosome 16 clone RP11-295M3, comp... 40 9.1
47dbj|AP003298.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
48dbj|AP003277.2| Oryza sativa (japonica cultivar-group) genomic D... 40 9.1
49gb|AC048342.17| Homo sapiens 12 BAC RP11-1043J7 (Roswell Park Ca... 40 9.1
50gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi... 40 9.1
51gb|AE017220.1| Salmonella enterica subsp. enterica serovar Chole... 40 9.1
52gb|AC118223.11| Mus musculus chromosome 7, clone RP23-337G6, com... 40 9.1
53gb|AF001386.1|STAF001386 Salmonella typhimurium sigma-E factor r... 40 9.1
54gb|AC134843.4| Mus musculus BAC clone RP24-388C21 from 3, comple... 40 9.1
55gb|M27069.1|YSPSDS21A Schizosaccharomyces pombe protein phosphat... 40 9.1 
>dbj|AK106195.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-E08, full
           insert sequence
          Length = 1206

 Score =  283 bits (143), Expect = 4e-73
 Identities = 236/267 (88%)
 Strand = Plus / Minus

                                                                       
Query: 263 gaaacatcactcaacctttgcaacccctccttcaggtagactgctatcagaaaccgcttc 322
           |||| |||||||||||||||||| ||||||||| |||||||| || |||  ||| |||||
Sbjct: 743 gaaagatcactcaacctttgcaaaccctccttccggtagactactgtcattaactgcttc 684

                                                                       
Query: 323 tcgcacaaaccttgttaacttttcttgagatgactgtaatacatagattgcaaggatgaa 382
           ||||||||| ||||| |||||||| |||||||| || |  || |||||||||||||||||
Sbjct: 683 tcgcacaaatcttgtcaacttttcctgagatgattgcaggacgtagattgcaaggatgaa 624

                                                                       
Query: 383 ggaaagaacaaggccagatccaaataacacatagaatcctgcagtaacatctatctctga 442
           ||| |||||||| ||||||||||| ||||||||||| ||| ||| |||||||||||| ||
Sbjct: 623 ggatagaacaagcccagatccaaacaacacatagaaacctccaggaacatctatctccga 564

                                                                       
Query: 443 ctgttcctcccatgtataactaacaagtacatattttggccaattctgttgatcccagaa 502
            || |||||||||||||| || || || ||||||||||||||||||||||||||||||||
Sbjct: 563 ttgctcctcccatgtatatctgaccagaacatattttggccaattctgttgatcccagaa 504

                                      
Query: 503 attcttctttatgtcaggatgaagttc 529
           ||||||| |||||||||||||| ||||
Sbjct: 503 attcttccttatgtcaggatgatgttc 477
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>dbj|AK069800.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027O05, full
           insert sequence
          Length = 1200

 Score =  283 bits (143), Expect = 4e-73
 Identities = 236/267 (88%)
 Strand = Plus / Minus

                                                                       
Query: 263 gaaacatcactcaacctttgcaacccctccttcaggtagactgctatcagaaaccgcttc 322
           |||| |||||||||||||||||| ||||||||| |||||||| || |||  ||| |||||
Sbjct: 759 gaaagatcactcaacctttgcaaaccctccttccggtagactactgtcattaactgcttc 700

                                                                       
Query: 323 tcgcacaaaccttgttaacttttcttgagatgactgtaatacatagattgcaaggatgaa 382
           ||||||||| ||||| |||||||| |||||||| || |  || |||||||||||||||||
Sbjct: 699 tcgcacaaatcttgtcaacttttcctgagatgattgcaggacgtagattgcaaggatgaa 640

                                                                       
Query: 383 ggaaagaacaaggccagatccaaataacacatagaatcctgcagtaacatctatctctga 442
           ||| |||||||| ||||||||||| ||||||||||| ||| ||| |||||||||||| ||
Sbjct: 639 ggatagaacaagcccagatccaaacaacacatagaaacctccaggaacatctatctccga 580

                                                                       
Query: 443 ctgttcctcccatgtataactaacaagtacatattttggccaattctgttgatcccagaa 502
            || |||||||||||||| || || || ||||||||||||||||||||||||||||||||
Sbjct: 579 ttgctcctcccatgtatatctgaccagaacatattttggccaattctgttgatcccagaa 520

                                      
Query: 503 attcttctttatgtcaggatgaagttc 529
           ||||||| |||||||||||||| ||||
Sbjct: 519 attcttccttatgtcaggatgatgttc 493
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>gb|AY105479.1| Zea mays PCO072018 mRNA sequence
          Length = 965

 Score =  270 bits (136), Expect = 5e-69
 Identities = 235/266 (88%), Gaps = 4/266 (1%)
 Strand = Plus / Minus

                                                                       
Query: 267 catcactcaacctttgcaacccctccttcaggtagactgctatcagaaaccgcttctcgc 326
           |||||||| |||||||||||   ||| || || || || ||||| | ||| |||||||||
Sbjct: 728 catcactcgacctttgcaac---tccatctgggaggctactatctgcaactgcttctcgc 672

                                                                       
Query: 327 acaaaccttgttaacttttcttgagatgactgtaatacatagattgcaaggatgaaggaa 386
           ||||||||||| ||||| ||||||||||||||||  ||||| |||||||| |||||||| 
Sbjct: 671 acaaaccttgtcaacttctcttgagatgactgtaggacatatattgcaagaatgaaggac 612

                                                                       
Query: 387 agaacaaggccagatccaaataacacatagaatcctgcagtaacatctatctctgactgt 446
           | |||||| || ||||||||||||||||| |||||| ||||||||||||||||||| || 
Sbjct: 611 aaaacaagcccggatccaaataacacata-aatcctccagtaacatctatctctgattgc 553

                                                                       
Query: 447 tcctcccatgtataactaacaagtacatattttggccaattctgttgatcccagaaattc 506
           |||||||||||||| |||||||| || |||||||||||||||||| ||||||||||||||
Sbjct: 552 tcctcccatgtatatctaacaagaacgtattttggccaattctgtggatcccagaaattc 493

                                     
Query: 507 ttctttatgtcaggatgaagttccac 532
           ||||||||||||||||||| ||||||
Sbjct: 492 ttctttatgtcaggatgaacttccac 467
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>gb|AC144741.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0086E02,
              complete sequence
          Length = 150474

 Score =  107 bits (54), Expect = 5e-20
 Identities = 72/78 (92%)
 Strand = Plus / Minus

                                                                          
Query: 452    ccatgtataactaacaagtacatattttggccaattctgttgatcccagaaattcttctt 511
              ||||||||| || || || ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 122113 ccatgtatatctgaccagaacatattttggccaattctgttgatcccagaaattcttcct 122054

                                
Query: 512    tatgtcaggatgaagttc 529
              ||||||||||||| ||||
Sbjct: 122053 tatgtcaggatgatgttc 122036



 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 61/69 (88%)
 Strand = Plus / Minus

                                                                          
Query: 263    gaaacatcactcaacctttgcaacccctccttcaggtagactgctatcagaaaccgcttc 322
              |||| |||||||||||||||||| ||||||||| |||||||| || |||  ||| |||||
Sbjct: 122916 gaaagatcactcaacctttgcaaaccctccttccggtagactactgtcattaactgcttc 122857

                       
Query: 323    tcgcacaaa 331
              |||||||||
Sbjct: 122856 tcgcacaaa 122848



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                          
Query: 327    acaaaccttgttaacttttcttgagatgactgtaatacatagattgcaaggatgaaggaa 386
              ||||||||||| |||||||| |||||||| || |  || |||||||||||||||||||| 
Sbjct: 122533 acaaaccttgtcaacttttcctgagatgattgcaggacgtagattgcaaggatgaaggat 122474

                      
Query: 387    agaacaag 394
              ||||||||
Sbjct: 122473 agaacaag 122466



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                        
Query: 396    ccagatccaaataacacatagaatcctgcagtaacatctatctctgactgttcctccc 453
              ||||||||||| ||||||||||| ||| ||| |||||||||||| || || |||||||
Sbjct: 122277 ccagatccaaacaacacatagaaacctccaggaacatctatctccgattgctcctccc 122220
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>gb|AC084817.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0419C04,
             complete sequence
          Length = 136713

 Score =  107 bits (54), Expect = 5e-20
 Identities = 72/78 (92%)
 Strand = Plus / Minus

                                                                         
Query: 452   ccatgtataactaacaagtacatattttggccaattctgttgatcccagaaattcttctt 511
             ||||||||| || || || ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 20280 ccatgtatatctgaccagaacatattttggccaattctgttgatcccagaaattcttcct 20221

                               
Query: 512   tatgtcaggatgaagttc 529
             ||||||||||||| ||||
Sbjct: 20220 tatgtcaggatgatgttc 20203



 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 61/69 (88%)
 Strand = Plus / Minus

                                                                         
Query: 263   gaaacatcactcaacctttgcaacccctccttcaggtagactgctatcagaaaccgcttc 322
             |||| |||||||||||||||||| ||||||||| |||||||| || |||  ||| |||||
Sbjct: 21083 gaaagatcactcaacctttgcaaaccctccttccggtagactactgtcattaactgcttc 21024

                      
Query: 323   tcgcacaaa 331
             |||||||||
Sbjct: 21023 tcgcacaaa 21015



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                         
Query: 327   acaaaccttgttaacttttcttgagatgactgtaatacatagattgcaaggatgaaggaa 386
             ||||||||||| |||||||| |||||||| || |  || |||||||||||||||||||| 
Sbjct: 20700 acaaaccttgtcaacttttcctgagatgattgcaggacgtagattgcaaggatgaaggat 20641

                     
Query: 387   agaacaag 394
             ||||||||
Sbjct: 20640 agaacaag 20633



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                       
Query: 396   ccagatccaaataacacatagaatcctgcagtaacatctatctctgactgttcctccc 453
             ||||||||||| ||||||||||| ||| ||| |||||||||||| || || |||||||
Sbjct: 20444 ccagatccaaacaacacatagaaacctccaggaacatctatctccgattgctcctccc 20387
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  107 bits (54), Expect = 5e-20
 Identities = 72/78 (92%)
 Strand = Plus / Minus

                                                                           
Query: 452     ccatgtataactaacaagtacatattttggccaattctgttgatcccagaaattcttctt 511
               ||||||||| || || || ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 4044248 ccatgtatatctgaccagaacatattttggccaattctgttgatcccagaaattcttcct 4044189

                                 
Query: 512     tatgtcaggatgaagttc 529
               ||||||||||||| ||||
Sbjct: 4044188 tatgtcaggatgatgttc 4044171



 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 61/69 (88%)
 Strand = Plus / Minus

                                                                           
Query: 263     gaaacatcactcaacctttgcaacccctccttcaggtagactgctatcagaaaccgcttc 322
               |||| |||||||||||||||||| ||||||||| |||||||| || |||  ||| |||||
Sbjct: 4045051 gaaagatcactcaacctttgcaaaccctccttccggtagactactgtcattaactgcttc 4044992

                        
Query: 323     tcgcacaaa 331
               |||||||||
Sbjct: 4044991 tcgcacaaa 4044983



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                           
Query: 327     acaaaccttgttaacttttcttgagatgactgtaatacatagattgcaaggatgaaggaa 386
               ||||||||||| |||||||| |||||||| || |  || |||||||||||||||||||| 
Sbjct: 4044668 acaaaccttgtcaacttttcctgagatgattgcaggacgtagattgcaaggatgaaggat 4044609

                       
Query: 387     agaacaag 394
               ||||||||
Sbjct: 4044608 agaacaag 4044601



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 51/58 (87%)
 Strand = Plus / Minus

                                                                         
Query: 396     ccagatccaaataacacatagaatcctgcagtaacatctatctctgactgttcctccc 453
               ||||||||||| ||||||||||| ||| ||| |||||||||||| || || |||||||
Sbjct: 4044412 ccagatccaaacaacacatagaaacctccaggaacatctatctccgattgctcctccc 4044355
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>ref|NM_115020.2| Arabidopsis thaliana unknown protein AT3G51610 mRNA, complete cds
          Length = 943

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                       
Query: 411 acatagaatcctgcagtaacatctatctctgactgttcctcccatgtataactaacaagt 470
           |||||||||||||  |  ||||| ||||||||||| |||| |||||| || |||||||| 
Sbjct: 640 acatagaatcctgaggatacatcaatctctgactgctccttccatgtgtatctaacaaga 581

                         
Query: 471 acatattttggcca 484
           |||| |||||||||
Sbjct: 580 acatgttttggcca 567
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>gb|AY136426.1| Arabidopsis thaliana putative protein (At3g51610) mRNA, complete
           cds
          Length = 943

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                       
Query: 411 acatagaatcctgcagtaacatctatctctgactgttcctcccatgtataactaacaagt 470
           |||||||||||||  |  ||||| ||||||||||| |||| |||||| || |||||||| 
Sbjct: 640 acatagaatcctgaggatacatcaatctctgactgctccttccatgtgtatctaacaaga 581

                         
Query: 471 acatattttggcca 484
           |||| |||||||||
Sbjct: 580 acatgttttggcca 567
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>gb|BT006266.1| Arabidopsis thaliana At3g51610 mRNA, complete cds
          Length = 693

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                       
Query: 411 acatagaatcctgcagtaacatctatctctgactgttcctcccatgtataactaacaagt 470
           |||||||||||||  |  ||||| ||||||||||| |||| |||||| || |||||||| 
Sbjct: 548 acatagaatcctgaggatacatcaatctctgactgctccttccatgtgtatctaacaaga 489

                         
Query: 471 acatattttggcca 484
           |||| |||||||||
Sbjct: 488 acatgttttggcca 475
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>emb|BX825014.1|CNS0A6YE Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH8ZB08 of Hormone Treated Callus of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1493

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                        
Query: 411  acatagaatcctgcagtaacatctatctctgactgttcctcccatgtataactaacaagt 470
            |||||||||||||  |  ||||| ||||||||||| |||| |||||| || |||||||| 
Sbjct: 1208 acatagaatcctgaggatacatcaatctctgactgctccttccatgtgtatctaacaaga 1149

                          
Query: 471  acatattttggcca 484
            |||| |||||||||
Sbjct: 1148 acatgttttggcca 1135
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>gb|AY088686.1| Arabidopsis thaliana clone 9188 mRNA, complete sequence
          Length = 927

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                       
Query: 411 acatagaatcctgcagtaacatctatctctgactgttcctcccatgtataactaacaagt 470
           |||||||||||||  |  ||||| ||||||||||| |||| |||||| || |||||||| 
Sbjct: 624 acatagaatcctgaggatacatcaatctctgactgctccttccatgtgtatctaacaaga 565

                         
Query: 471 acatattttggcca 484
           |||| |||||||||
Sbjct: 564 acatgttttggcca 551
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>emb|AJ238805.1|ATH238805 Arabidopsis thaliana mRNA for hypothetical protein (clone 83G12T7)
          Length = 756

 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 63/74 (85%)
 Strand = Plus / Minus

                                                                       
Query: 411 acatagaatcctgcagtaacatctatctctgactgttcctcccatgtataactaacaagt 470
           |||||||||||||  |  ||||| ||||||||||| |||| |||||| || |||||||| 
Sbjct: 446 acatagaatcctgaggatacatcaatctctgactgctccttccatgtgtatctaacaaga 387

                         
Query: 471 acatattttggcca 484
           |||| |||||||||
Sbjct: 386 acatgttttggcca 373
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>emb|AL929033.7| Mouse DNA sequence from clone RP23-427N17 on chromosome 2, complete
             sequence
          Length = 164571

 Score = 48.1 bits (24), Expect = 0.037
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 352   atgactgtaatacatagattgcaa 375
             ||||||||||||||||||||||||
Sbjct: 55103 atgactgtaatacatagattgcaa 55080
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>gb|U50363.1|HRU50363 Human respiratory syncytial virus, mutant cpts-248, complete genome
          Length = 15222

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 511   ttatgtcaggatgaagttccacaactg 537
             |||||||||||||||||||||| ||||
Sbjct: 14111 ttatgtcaggatgaagttccactactg 14085
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>gb|U50362.1|HRU50362 Human respiratory syncytial virus, mutant cp-RSV, complete genome
          Length = 15222

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 511   ttatgtcaggatgaagttccacaactg 537
             |||||||||||||||||||||| ||||
Sbjct: 14111 ttatgtcaggatgaagttccactactg 14085
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>gb|AY911262.1| Human respiratory syncytial virus strain ATCC VR-26, complete genome
          Length = 15226

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 511   ttatgtcaggatgaagttccacaactg 537
             |||||||||||||||||||||| ||||
Sbjct: 14110 ttatgtcaggatgaagttccaccactg 14084
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>gb|AF254574.1|AF254574 Human respiratory syncytial virus M2 gene, partial sequence; and
            polymerase L gene, complete cds
          Length = 6578

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 511  ttatgtcaggatgaagttccacaactg 537
            |||||||||||||||||||||| ||||
Sbjct: 5622 ttatgtcaggatgaagttccaccactg 5596
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>gb|U63644.1|HRU63644 Human respiratory syncytial virus, mutant cpts-248/404, complete genome
          Length = 15222

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 511   ttatgtcaggatgaagttccacaactg 537
             |||||||||||||||||||||| ||||
Sbjct: 14111 ttatgtcaggatgaagttccactactg 14085
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>gb|U27298.1|HRU27298 Human respiratory syncytial virus RNA-dependent RNA polymerase (L)
            gene, complete cds
          Length = 6578

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 511  ttatgtcaggatgaagttccacaactg 537
            |||||||||||||||||||||| ||||
Sbjct: 5622 ttatgtcaggatgaagttccactactg 5596
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>gb|M74568.1|RSHSEQ Human respiratory syncytial virus nonstructural protein 1,
             nonstructural protein 2, nucleocapsid protein,
             phosphoprotein, matrix protein, small hydrophobic protein,
             glycoprotein, fusion glycoprotein, 22K/M2 protein and L
             protein mRNA, complete cds
          Length = 15222

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 511   ttatgtcaggatgaagttccacaactg 537
             |||||||||||||||||||||| ||||
Sbjct: 14111 ttatgtcaggatgaagttccactactg 14085
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>gb|M75730.1|RSHPOLLA Human respiratory syncytial virus polymerase L RNA, complete cds
          Length = 6578

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 511  ttatgtcaggatgaagttccacaactg 537
            |||||||||||||||||||||| ||||
Sbjct: 5622 ttatgtcaggatgaagttccactactg 5596
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>gb|AF035006.1| Human respiratory syncytial virus, recombinant mutant rA2cp, complete
             genome
          Length = 15223

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 511   ttatgtcaggatgaagttccac 532
             ||||||||||||||||||||||
Sbjct: 14112 ttatgtcaggatgaagttccac 14091
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>gb|AC103778.2| Homo sapiens chromosome 8, clone RP11-463C14, complete sequence
          Length = 161500

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 51    acacattctgcaaaactgtaat 72
             ||||||||||||||||||||||
Sbjct: 89332 acacattctgcaaaactgtaat 89311
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>gb|AC154438.2| Mus musculus BAC clone RP23-178P20 from 16, complete sequence
          Length = 213575

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 538   cccaatgaaacacagatgggt 558
             |||||||||||||||||||||
Sbjct: 24017 cccaatgaaacacagatgggt 24037
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>emb|CT025592.14| Mouse DNA sequence from clone RP23-431J17 on chromosome 16, complete
             sequence
          Length = 215987

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 538   cccaatgaaacacagatgggt 558
             |||||||||||||||||||||
Sbjct: 44184 cccaatgaaacacagatgggt 44164
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>gb|AC093353.11| Mus musculus chromosome 10, clone RP23-19C22, complete sequence
          Length = 188921

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 343    tttcttgagatgactgtaat 362
              ||||||||||||||||||||
Sbjct: 110471 tttcttgagatgactgtaat 110490
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>gb|AC112675.12| Mus musculus chromosome 1, clone RP23-138J12, complete sequence
          Length = 278715

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 433   ctatctctgactgttcctcc 452
             ||||||||||||||||||||
Sbjct: 51331 ctatctctgactgttcctcc 51312
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>gb|AC124415.4| Mus musculus BAC clone RP24-298J2 from chromosome 10, complete sequence
          Length = 160137

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 343   tttcttgagatgactgtaat 362
             ||||||||||||||||||||
Sbjct: 26760 tttcttgagatgactgtaat 26779
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>gb|AC079416.4| Homo sapiens chromosome 16 clone RP11-454F8, complete sequence
          Length = 205498

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 373    caaggatgaaggaaagaaca 392
              ||||||||||||||||||||
Sbjct: 164418 caaggatgaaggaaagaaca 164437
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>ref|XM_808998.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053508539.10) partial mRNA
          Length = 824

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 193 ccaagaaattggtatctttg 212
           ||||||||||||||||||||
Sbjct: 327 ccaagaaattggtatctttg 308
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>gb|AC183502.5| Medicago truncatula clone mth2-75g17, complete sequence
          Length = 121928

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 196   agaaattggtatctttgtcagtgt 219
             |||||||||||||||| |||||||
Sbjct: 83818 agaaattggtatctttatcagtgt 83841
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>gb|AC151666.15| Medicago truncatula clone mth2-30n15, complete sequence
          Length = 116410

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 196    agaaattggtatctttgtcagtgt 219
              |||||||||||||||| |||||||
Sbjct: 116314 agaaattggtatctttatcagtgt 116291
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>gb|AC157534.12| Medicago truncatula clone mth2-50p19, complete sequence
          Length = 116410

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 196    agaaattggtatctttgtcagtgt 219
              |||||||||||||||| |||||||
Sbjct: 116314 agaaattggtatctttatcagtgt 116291
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>gb|AE008819.1| Salmonella typhimurium LT2, section 123 of 220 of the complete genome
          Length = 22108

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 244  aatccaacagcccctcgtgg 263
            ||||||||||||||||||||
Sbjct: 9071 aatccaacagcccctcgtgg 9090
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>gb|AE008743.2| Salmonella typhimurium LT2, section 49 of 220 of the complete genome
          Length = 62027

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 244   aatccaacagcccctcgtgg 263
             ||||||||||||||||||||
Sbjct: 23059 aatccaacagcccctcgtgg 23040
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>emb|AL627268.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,
              complete chromosome; segment 4/20
          Length = 294050

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 244    aatccaacagcccctcgtgg 263
              ||||||||||||||||||||
Sbjct: 258802 aatccaacagcccctcgtgg 258783
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>emb|AL031824.1|SPCC31H12 S.pombe chromosome III cosmid c31H12
          Length = 20014

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 491  ttgatcccagaaattcttctttatgtca 518
            ||||| |||||| |||||||||||||||
Sbjct: 8703 ttgatgccagaatttcttctttatgtca 8730
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>gb|AC154397.8| Mus musculus chromosome 7, clone RP23-53N23, complete sequence
          Length = 273314

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 369   attgcaaggatgaaggaaag 388
             ||||||||||||||||||||
Sbjct: 76892 attgcaaggatgaaggaaag 76873
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>emb|AL928651.13| Mouse DNA sequence from clone RP23-167A19 on chromosome 4 Contains a
             3-hydroxyisobutyrate dehydrogenase, mitochondrial
             precursor (Hibadh) pseudogene and a CpG island, complete
             sequence
          Length = 157883

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 427   taacatctatctctgactgt 446
             ||||||||||||||||||||
Sbjct: 13129 taacatctatctctgactgt 13148
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>gb|AC005560.3| Arabidopsis thaliana chromosome 2 clone F2I9 map rga, complete sequence
          Length = 103125

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 365   atagattgcaaggatgaaggaaagaaca 392
             ||||||| ||||||||||| ||||||||
Sbjct: 53878 atagatttcaaggatgaagaaaagaaca 53905
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>gb|DP000032.1| Felis catus target 116 genomic scaffold
          Length = 376810

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 432    tctatctctgactgttcctc 451
              ||||||||||||||||||||
Sbjct: 245993 tctatctctgactgttcctc 246012
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>gb|AC137146.9| Mus musculus chromosome 1, clone RP24-358I14, complete sequence
          Length = 189466

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 433    ctatctctgactgttcctcc 452
              ||||||||||||||||||||
Sbjct: 142545 ctatctctgactgttcctcc 142526
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 459      taactaacaagtacatattt 478
                ||||||||||||||||||||
Sbjct: 42922456 taactaacaagtacatattt 42922437
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>gb|AC013449.8| Homo sapiens BAC clone RP11-558C24 from 2, complete sequence
          Length = 120997

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 54     cattctgcaaaactgtaatg 73
              ||||||||||||||||||||
Sbjct: 114636 cattctgcaaaactgtaatg 114617
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>gb|AC154803.2| Mus musculus BAC clone RP24-505I19 from chromosome 9, complete sequence
          Length = 140552

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 419   tcctgcagtaacatctatctctga 442
             |||||||| |||||||||||||||
Sbjct: 90968 tcctgcagaaacatctatctctga 90991
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>gb|AC007906.8| Homo sapiens chromosome 16 clone RP11-295M3, complete sequence
          Length = 183257

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 373   caaggatgaaggaaagaaca 392
             ||||||||||||||||||||
Sbjct: 43631 caaggatgaaggaaagaaca 43650
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>dbj|AP003298.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0698H10
          Length = 153449

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 459   taactaacaagtacatattt 478
             ||||||||||||||||||||
Sbjct: 23335 taactaacaagtacatattt 23316
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>dbj|AP003277.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0518C01
          Length = 173555

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 459    taactaacaagtacatattt 478
              ||||||||||||||||||||
Sbjct: 116190 taactaacaagtacatattt 116171
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>gb|AC048342.17| Homo sapiens 12 BAC RP11-1043J7 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 35995

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 433   ctatctctgactgttcctcc 452
             ||||||||||||||||||||
Sbjct: 19081 ctatctctgactgttcctcc 19062
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>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome
          Length = 4791961

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 244     aatccaacagcccctcgtgg 263
               ||||||||||||||||||||
Sbjct: 1963275 aatccaacagcccctcgtgg 1963294
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>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67,
               complete genome
          Length = 4755700

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 244     aatccaacagcccctcgtgg 263
               ||||||||||||||||||||
Sbjct: 2784303 aatccaacagcccctcgtgg 2784322
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>gb|AC118223.11| Mus musculus chromosome 7, clone RP23-337G6, complete sequence
          Length = 196119

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 369    attgcaaggatgaaggaaag 388
              ||||||||||||||||||||
Sbjct: 127358 attgcaaggatgaaggaaag 127339
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>gb|AF001386.1|STAF001386 Salmonella typhimurium sigma-E factor regulatory protein (rseA) gene,
             partial cds; sigma-E factor regulatory protein (rseB),
             sigma-E factor regulatory protein (rseC), truncated
             GTP-binding protein (lepA), complete cds; Gifsy-1 prophage
             left-end portion: putative integrase (int), putative
             excisionase (xis), and exodeoxyribonuclease VIII (recE)
             genes, complete cds; and unknown genes
          Length = 13311

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 244   aatccaacagcccctcgtgg 263
             ||||||||||||||||||||
Sbjct: 11678 aatccaacagcccctcgtgg 11659
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>gb|AC134843.4| Mus musculus BAC clone RP24-388C21 from 3, complete sequence
          Length = 205200

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 467   aagtacatattttggccaattctg 490
             |||||||||||||| |||||||||
Sbjct: 67538 aagtacatattttgtccaattctg 67561
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>gb|M27069.1|YSPSDS21A Schizosaccharomyces pombe protein phosphatase type 1-like (sds21+)
            gene, complete cds
          Length = 2096

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 491  ttgatcccagaaattcttctttatgtca 518
            ||||| |||||| |||||||||||||||
Sbjct: 1856 ttgatgccagaatttcttctttatgtca 1829


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,982,252
Number of Sequences: 3902068
Number of extensions: 5982252
Number of successful extensions: 106640
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 106454
Number of HSP's gapped (non-prelim): 184
length of query: 665
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 642
effective length of database: 17,143,297,704
effective search space: 11005997125968
effective search space used: 11005997125968
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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