ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags1c19 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 141 bits (71), Expect = 3e-30 Identities = 248/307 (80%) Strand = Plus / Plus Query: 242 gctcaatcaaaatcaagggagcactcatagtcatcaccttcacgaacttgaccaaaggaa 301 |||||||||||||| ||||||| || |||| || |||||||| ||| || || ||| Sbjct: 14623123 gctcaatcaaaatcttgggagcagtcgaagtcgtccccttcacggggttggccgaaagaa 14623182 Query: 302 ctgtatgcgagatggtcaccttttttcatcttgccagcaagaaagctctggggatccttg 361 ||||| || ||||| ||||| || |||||||||||| | || ||||||||||| |||||| Sbjct: 14623183 ctgtacgccagatgatcacccttcttcatcttgccacccaggaagctctgggggtccttg 14623242 Query: 362 tcatcatgctgcacccttccggttacctccaggcacaagccattctttccgagcttcttg 421 ||||| ||||||| ||| || |||||||||||||||| ||||||||| ||| ||||| Sbjct: 14623243 tcatcgtgctgcagcctcccagttacctccaggcacaggccattcttggtgagtctcttg 14623302 Query: 422 ctctgttttaccctgtcggttctgggcttcacaggtcctgtttcaatgaagactggctgc 481 |||||| | ||||| ||| | |||||||| || |||||||| ||||| || |||||| Sbjct: 14623303 ctctgtcgagctctgtcagtttttggcttcactggccctgtttcgatgaacacgggctgc 14623362 Query: 482 tctctgatcgaggggctgggctgtatgcgttgaacctgatgcttctgttctagtggtctc 541 |||||||| | |||| ||| |||||||| || | ||||| ||||| ||| |||||| | Sbjct: 14623363 tctctgattgtggggttggcttgtatgcggtggatctgatccttctcttcaggtggtccc 14623422 Query: 542 atgatcc 548 | ||||| Sbjct: 14623423 aagatcc 14623429
>dbj|AP005397.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0643D11 Length = 137525 Score = 141 bits (71), Expect = 3e-30 Identities = 248/307 (80%) Strand = Plus / Plus Query: 242 gctcaatcaaaatcaagggagcactcatagtcatcaccttcacgaacttgaccaaaggaa 301 |||||||||||||| ||||||| || |||| || |||||||| ||| || || ||| Sbjct: 44790 gctcaatcaaaatcttgggagcagtcgaagtcgtccccttcacggggttggccgaaagaa 44849 Query: 302 ctgtatgcgagatggtcaccttttttcatcttgccagcaagaaagctctggggatccttg 361 ||||| || ||||| ||||| || |||||||||||| | || ||||||||||| |||||| Sbjct: 44850 ctgtacgccagatgatcacccttcttcatcttgccacccaggaagctctgggggtccttg 44909 Query: 362 tcatcatgctgcacccttccggttacctccaggcacaagccattctttccgagcttcttg 421 ||||| ||||||| ||| || |||||||||||||||| ||||||||| ||| ||||| Sbjct: 44910 tcatcgtgctgcagcctcccagttacctccaggcacaggccattcttggtgagtctcttg 44969 Query: 422 ctctgttttaccctgtcggttctgggcttcacaggtcctgtttcaatgaagactggctgc 481 |||||| | ||||| ||| | |||||||| || |||||||| ||||| || |||||| Sbjct: 44970 ctctgtcgagctctgtcagtttttggcttcactggccctgtttcgatgaacacgggctgc 45029 Query: 482 tctctgatcgaggggctgggctgtatgcgttgaacctgatgcttctgttctagtggtctc 541 |||||||| | |||| ||| |||||||| || | ||||| ||||| ||| |||||| | Sbjct: 45030 tctctgattgtggggttggcttgtatgcggtggatctgatccttctcttcaggtggtccc 45089 Query: 542 atgatcc 548 | ||||| Sbjct: 45090 aagatcc 45096
>dbj|AK062649.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-105-E05, full insert sequence Length = 769 Score = 141 bits (71), Expect = 3e-30 Identities = 248/307 (80%) Strand = Plus / Minus Query: 242 gctcaatcaaaatcaagggagcactcatagtcatcaccttcacgaacttgaccaaaggaa 301 |||||||||||||| ||||||| || |||| || |||||||| ||| || || ||| Sbjct: 536 gctcaatcaaaatcttgggagcagtcgaagtcgtccccttcacggggttggccgaaagaa 477 Query: 302 ctgtatgcgagatggtcaccttttttcatcttgccagcaagaaagctctggggatccttg 361 ||||| || ||||| ||||| || |||||||||||| | || ||||||||||| |||||| Sbjct: 476 ctgtacgccagatgatcacccttcttcatcttgccacccaggaagctctgggggtccttg 417 Query: 362 tcatcatgctgcacccttccggttacctccaggcacaagccattctttccgagcttcttg 421 ||||| ||||||| ||| || |||||||||||||||| ||||||||| ||| ||||| Sbjct: 416 tcatcgtgctgcagcctcccagttacctccaggcacaggccattcttggtgagtctcttg 357 Query: 422 ctctgttttaccctgtcggttctgggcttcacaggtcctgtttcaatgaagactggctgc 481 |||||| | ||||| ||| | |||||||| || |||||||| ||||| || |||||| Sbjct: 356 ctctgtcgagctctgtcagtttttggcttcactggccctgtttcgatgaacacgggctgc 297 Query: 482 tctctgatcgaggggctgggctgtatgcgttgaacctgatgcttctgttctagtggtctc 541 |||||||| | |||| ||| |||||||| || | ||||| ||||| ||| |||||| | Sbjct: 296 tctctgattgtggggttggcttgtatgcggtggatctgatccttctcttcaggtggtccc 237 Query: 542 atgatcc 548 | ||||| Sbjct: 236 aagatcc 230
>gb|AY111806.1| Zea mays CL36156_1 mRNA sequence Length = 691 Score = 83.8 bits (42), Expect = 6e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 357 ccttgtcatcatgctgcacccttccggttacctccaggcacaagccattctttccgagct 416 |||||||||||||||||| || |||||||||||||||||||| |||||||| | ||| Sbjct: 376 ccttgtcatcatgctgcagccgtccggttacctccaggcacagaccattcttggcaagcc 317 Query: 417 tcttgctctgtttt 430 |||||||||||||| Sbjct: 316 tcttgctctgtttt 303
>ref|XM_957566.1| Neurospora crassa OR74A hypothetical protein (NCU07989.1) partial mRNA Length = 432 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 426 gttttaccctgtcggttctgg 446 ||||||||||||||||||||| Sbjct: 41 gttttaccctgtcggttctgg 21
>ref|XM_328694.1| Neurospora crassa OR74A hypothetical protein (NCU07989.1) partial mRNA Length = 432 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 426 gttttaccctgtcggttctgg 446 ||||||||||||||||||||| Sbjct: 41 gttttaccctgtcggttctgg 21
>ref|XM_756188.1| Ustilago maydis 521 hypothetical protein (UM05134.1) partial mRNA Length = 5622 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 494 gggctgggctgtatgcgttga 514 ||||||||||||||||||||| Sbjct: 772 gggctgggctgtatgcgttga 752
>emb|CT009566.5| Pig DNA sequence from clone CH242-258I7 on chromosome 17, complete sequence Length = 75808 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 532 tagtggtctcatgatcccttg 552 ||||||||||||||||||||| Sbjct: 55220 tagtggtctcatgatcccttg 55200
>gb|AC068648.16| Homo sapiens 12 BAC RP11-331C18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 126325 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 320 ccttttttcatcttgccagca 340 ||||||||||||||||||||| Sbjct: 22676 ccttttttcatcttgccagca 22696
>gb|AC022165.9| Homo sapiens chromosome 16 clone RP11-517C16, complete sequence Length = 213464 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 533 agtggtctcatgatcccttgg 553 ||||||||||||||||||||| Sbjct: 207198 agtggtctcatgatcccttgg 207218
>gb|AC092145.2| Homo sapiens chromosome 16 clone RP11-61F12, complete sequence Length = 113176 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 533 agtggtctcatgatcccttgg 553 ||||||||||||||||||||| Sbjct: 27867 agtggtctcatgatcccttgg 27887
>emb|AL391360.22| Human DNA sequence from clone RP13-111A12 on chromosome Xq27.1-28, complete sequence Length = 71739 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 249 caaaatcaagggagcactcatagt 272 |||||||| ||||||||||||||| Sbjct: 64402 caaaatcaggggagcactcatagt 64425
>emb|AL031984.13|HS173D1 Human DNA sequence from clone RP1-173D1 on chromosome 1p36.21-36.33 Contains the 5' UTR of the gene for a novel protein (FLJ34970, FLJ20321) and a CpG island, complete sequence Length = 117338 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 cctccagctggaaacttgac 159 |||||||||||||||||||| Sbjct: 92323 cctccagctggaaacttgac 92304
>emb|BX000995.12| Mouse DNA sequence from clone RP23-106K17 on chromosome 11 Contains a protease pseuodogene, complete sequence Length = 189417 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 ccagcaagaaagctctgggg 354 |||||||||||||||||||| Sbjct: 82083 ccagcaagaaagctctgggg 82102
>dbj|AP007169.1| Aspergillus oryzae RIB40 genomic DNA, SC038 Length = 1725576 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 401 ccattctttccgagcttctt 420 |||||||||||||||||||| Sbjct: 928549 ccattctttccgagcttctt 928530
>gb|AC109361.4| Homo sapiens BAC clone RP11-710F7 from 4, complete sequence Length = 133749 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 261 agcactcatagtcatcaccttcac 284 |||||||| ||||||||||||||| Sbjct: 82821 agcactcagagtcatcaccttcac 82844
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 417 tcttgctctgttttaccctgtcgg 440 |||||| ||||||||||||||||| Sbjct: 472429 tcttgcactgttttaccctgtcgg 472452
>gb|AC154719.2| Mus musculus BAC clone RP24-370O15 from 16, complete sequence Length = 163408 Score = 40.1 bits (20), Expect = 7.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 441 ttctgggcttcacaggtcct 460 |||||||||||||||||||| Sbjct: 135425 ttctgggcttcacaggtcct 135444
>dbj|AP001820.2| Homo sapiens genomic DNA, chromosome 4q22-q24, clone:2031A10, complete sequence Length = 101947 Score = 40.1 bits (20), Expect = 7.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 261 agcactcatagtcatcaccttcac 284 |||||||| ||||||||||||||| Sbjct: 65525 agcactcagagtcatcaccttcac 65502 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,636,571 Number of Sequences: 3902068 Number of extensions: 4636571 Number of successful extensions: 72436 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72348 Number of HSP's gapped (non-prelim): 85 length of query: 554 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 531 effective length of database: 17,143,297,704 effective search space: 9103091080824 effective search space used: 9103091080824 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
