>emb|AJ242873.1|HVU242873 Hordeum vulgare mRNA for vacuolar H+-ATPase subunit C
          Length = 1487

 Score =  587 bits (296), Expect = e-165
 Identities = 322/329 (97%), Gaps = 4/329 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    aaagataagtcccactttgtgccaggcatacgttcgaggttctccgaaacactatattat 60
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1341 aaagataagtcccactttgtgccagg-atacgttcgaggttctccgaaacactatattat 1283

                                                                        
Query: 61   tgatcggcgcggatcatctactacagaagtatgaaccgaaaccgacataccatgaaagaa 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1282 tgatcggcgcggatcatctactacagaagtatgaaccgaaaccgacataccatgaaagaa 1223

                                                                        
Query: 121  ttggtgtcacaaaatattttacatcaaacaccctcagacaaagtttatggtgaaggacac 180
            |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1222 ttggtgtcacaaaataatatacatcaaacaccctcagacaaagtttatggtgaaggacac 1163

                                                                        
Query: 181  gtatgggtgggactctgtctcgcctcccaggccagcagccatacccacgtcgtcttcaga 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1162 gtatgggtgggactctgtctcgcctcccaggccagcagccatacccacgtcgtcttcaga 1103

                                                                        
Query: 241  tctccagtanctgctgntggtattgccgcatagcccttccaagatgttccttactttttt 300
            |||||||||   |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1102 tctccagta---gctgttggtattgccgcatagcccttccaagatgttccttactttttt 1046

                                         
Query: 301  ctcgctctttgtagatggtgctaggacaa 329
            |||||||||||||||||||||||||||||
Sbjct: 1045 ctcgctctttgtagatggtgctaggacaa 1017

>gb|BT019108.1| Zea mays clone Contig713.F mRNA sequence
          Length = 984

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 58/65 (89%)
 Strand = Plus / Plus

                                                                       
Query: 153 ctcagacaaagtttatggtgaaggacacgtatgggtgggactctgtctcgcctcccaggc 212
           |||||||||| |||||||||||||||||||| ||||| | ||| || ||||||||||| |
Sbjct: 346 ctcagacaaaatttatggtgaaggacacgtaagggtgcgcctcggtttcgcctcccagac 405

                
Query: 213 cagca 217
           |||||
Sbjct: 406 cagca 410



 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                    
Query: 281 aagatgttccttacttttttctcgctctttgtagatggtgc 321
           |||||| |||||||||| |||||||||||||||||||||||
Sbjct: 471 aagatgctccttactttcttctcgctctttgtagatggtgc 511

>gb|AY103694.1| Zea mays PCO086635 mRNA sequence
          Length = 1710

 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 57/65 (87%)
 Strand = Plus / Minus

                                                                        
Query: 153  ctcagacaaagtttatggtgaaggacacgtatgggtgggactctgtctcgcctcccaggc 212
            |||||||||| |||||||||||||| ||||| ||||| | ||| || ||||||||||| |
Sbjct: 1317 ctcagacaaaatttatggtgaaggagacgtaagggtgcgcctcggtttcgcctcccagac 1258

                 
Query: 213  cagca 217
            |||||
Sbjct: 1257 cagca 1253



 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                     
Query: 281  aagatgttccttacttttttctcgctctttgtagatggtgc 321
            |||||| |||||||||| |||||||||||||||||||||||
Sbjct: 1192 aagatgctccttactttcttctcgctctttgtagatggtgc 1152

>emb|BX255917.3| Zebrafish DNA sequence from clone DKEY-1H6 in linkage group 20
            Contains a novel gene, two transposase genes, a gene for
            a novel zinc finger protein and a gene for a novel
            protein similar to vertebrate MTHFD1, complete sequence
          Length = 218068

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 278  tccaagatgttccttacttttt 299
            ||||||||||||||||||||||
Sbjct: 2651 tccaagatgttccttacttttt 2672

>gb|AC101787.11| Mus musculus chromosome 1, clone RP24-147F6, complete sequence
          Length = 172617

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 127    tcacaaaatattttacatcaa 147
              |||||||||||||||||||||
Sbjct: 142327 tcacaaaatattttacatcaa 142307

>gb|CP000107.1| Ehrlichia canis str. Jake, complete genome
          Length = 1315030

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 131     aaaatattttacatcaaacac 151
               |||||||||||||||||||||
Sbjct: 1105891 aaaatattttacatcaaacac 1105911

>gb|AC162899.5| Mus musculus chromosome 1, clone RP24-222G3, complete sequence
          Length = 176916

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 127   tcacaaaatattttacatcaa 147
             |||||||||||||||||||||
Sbjct: 63086 tcacaaaatattttacatcaa 63106

>gb|AY107133.1| Zea mays PCO086632 mRNA sequence
          Length = 817

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                       
Query: 153 ctcagacaaagtttatggtgaaggacacgtatgggtgggactctgtctcgcctcccaggc 212
           |||| ||||||||||||||||| || ||||| || |||  |||||  || |||||||| |
Sbjct: 349 ctcaaacaaagtttatggtgaatgagacgtaaggatggacctctgattcacctcccagac 290

                
Query: 213 cagca 217
           |||||
Sbjct: 289 cagca 285

>emb|AL669953.7| Mouse DNA sequence from clone RP23-233B9 on chromosome 4, complete
             sequence
          Length = 179680

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 131   aaaatattttacatcaaacac 151
             |||||||||||||||||||||
Sbjct: 60279 aaaatattttacatcaaacac 60259

>gb|CP000141.1| Carboxydothermus hydrogenoformans Z-2901, complete genome
          Length = 2401520

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 277     ttccaagatgttccttactttttt 300
               ||||||||||||| ||||||||||
Sbjct: 1353506 ttccaagatgttcattactttttt 1353529

>emb|CR388071.10| Zebrafish DNA sequence from clone DKEY-25M22 in linkage group 14,
              complete sequence
          Length = 189098

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 131    aaaatattttacatcaaaca 150
              ||||||||||||||||||||
Sbjct: 177678 aaaatattttacatcaaaca 177659

>emb|AL645784.20| Mouse DNA sequence from clone RP23-11C7 on chromosome 11 Contains a
             zinc finger protein pseudogene, a chaperonin subunit 7
             (eta) (Cct7) pseudogene, a novel pseudogene and a CpG
             island, complete sequence
          Length = 217352

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   acaaaatattttacatcaaa 148
             ||||||||||||||||||||
Sbjct: 23015 acaaaatattttacatcaaa 23034

>gb|AC122938.3| Homo sapiens BAC clone RP11-201O10 from 4, complete sequence
          Length = 149028

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 132   aaatattttacatcaaacac 151
             ||||||||||||||||||||
Sbjct: 88399 aaatattttacatcaaacac 88380

>gb|AC110777.3| Homo sapiens BAC clone RP11-311C22 from 4, complete sequence
          Length = 166922

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 132  aaatattttacatcaaacac 151
            ||||||||||||||||||||
Sbjct: 3023 aaatattttacatcaaacac 3004

>dbj|AK156857.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
           library, clone:F830103K11 product:unclassifiable, full
           insert sequence
          Length = 3675

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 129 acaaaatattttacatcaaa 148
           ||||||||||||||||||||
Sbjct: 98  acaaaatattttacatcaaa 79

>gb|AC152834.2| Pan troglodytes BAC clone CH251-513M11 from chromosome unknown, complete
              sequence
          Length = 213409

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 132    aaatattttacatcaaacac 151
              ||||||||||||||||||||
Sbjct: 118648 aaatattttacatcaaacac 118667

>emb|BX072529.5| Zebrafish DNA sequence from clone DKEY-20D17 in linkage group 7,
             complete sequence
          Length = 223845

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 276   cttccaagatgttccttacttttt 299
             |||||||||||||||||| |||||
Sbjct: 56665 cttccaagatgttccttatttttt 56688

>emb|BX005164.9| Mouse DNA sequence from clone RP23-257P3 on chromosome X, complete
              sequence
          Length = 168756

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 274    cccttccaagatgttcctta 293
              ||||||||||||||||||||
Sbjct: 138637 cccttccaagatgttcctta 138656

>emb|CR788243.8| Zebrafish DNA sequence from clone DKEY-194O9 in linkage group 7,
             complete sequence
          Length = 113842

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 276   cttccaagatgttccttacttttt 299
             |||||||||||||||||| |||||
Sbjct: 56877 cttccaagatgttccttatttttt 56900

>gb|AC133953.3| Mus musculus BAC clone RP23-144D4 from chromosome 3, complete sequence
          Length = 196827

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 281   aagatgttccttactttttt 300
             ||||||||||||||||||||
Sbjct: 59310 aagatgttccttactttttt 59329

>emb|CR354605.8| Zebrafish DNA sequence from clone DKEY-5I9 in linkage group 14, complete
              sequence
          Length = 196530

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 131    aaaatattttacatcaaaca 150
              ||||||||||||||||||||
Sbjct: 101113 aaaatattttacatcaaaca 101094


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,091,126
Number of Sequences: 3902068
Number of extensions: 3091126
Number of successful extensions: 59449
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59400
Number of HSP's gapped (non-prelim): 47
length of query: 329
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 307
effective length of database: 17,147,199,772
effective search space: 5264190330004
effective search space used: 5264190330004
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)