| Clone Name | rbags1c05 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X56802.1|ASSPE1 Oat spe1 mRNA for arginine decarboxylase (EC 4.1.1.19) Length = 2124 Score = 167 bits (84), Expect = 5e-38 Identities = 222/268 (82%) Strand = Plus / Minus Query: 347 gggccgccgaacaggttatgcttgcaagaaagggcttcctggtacgcgccggacaggagc 406 ||||||||||||||||| |||||| || ||||| |||||||||||||||| ||||||| Sbjct: 1599 gggccgccgaacaggttgtgcttgttggatagggcctcctggtacgcgccggtcaggagc 1540 Query: 407 acggccacgtagtagccgtcgctctcagggtccagcgtgtgcagcggcagcgtgtcggca 466 |||||||| |||||||| || || || || |||| ||||||||||| ||| |||| Sbjct: 1539 acggccacatagtagccaccgagcttcggatctagcgggtgcagcggcatcgtctcggtg 1480 Query: 467 ttgccgatgaacttgtcaacctttccgtcgctgtcgcatgtgatgtcgatgagcgtgccc 526 | || ||||||||||| || || |||||||||||||| |||| |||| ||||||| || Sbjct: 1479 tcgcgtatgaacttgtcgactttgccgtcgctgtcgcaggtgacatcgacgagcgtggcc 1420 Query: 527 atttgagtcggcttctcgttgagccggctcgcgggcatcatcgggaagaggtgcttgatg 586 | |||||||||||||| | ||||||||| | |||||||||||||| || |||| |||| Sbjct: 1419 ttgtgagtcggcttctcatctagccggctcaccggcatcatcgggaacagatgctggatg 1360 Query: 587 ccccagaagtcgggaacgagcgagaaga 614 |||||| ||||||| | |||||||||| Sbjct: 1359 ccccagtagtcgggcattagcgagaaga 1332
>ref|XM_470990.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1872 Score = 131 bits (66), Expect = 3e-27 Identities = 144/170 (84%) Strand = Plus / Minus Query: 445 gtgcagcggcagcgtgtcggcattgccgatgaacttgtcaacctttccgtcgctgtcgca 504 ||||||||||||||| |||| | || ||||||||| || ||||| |||||||||||||| Sbjct: 1518 gtgcagcggcagcgtcacggcgtcgcggatgaacttctctaccttgccgtcgctgtcgca 1459 Query: 505 tgtgatgtcgatgagcgtgcccatttgagtcggcttctcgttgagccggctcgcgggcat 564 |||||||||| |||||||| | |||||||||||||| ||||||||| | ||||| Sbjct: 1458 ggtgatgtcgaccagcgtgccgttgatggtcggcttctcgttcagccggctcaccggcat 1399 Query: 565 catcgggaagaggtgcttgatgccccagaagtcgggaacgagcgagaaga 614 |||||||||||| || |||||||||||||||||| ||||| ||||||| Sbjct: 1398 catcgggaagagctggccgatgccccagaagtcggggacgagggagaaga 1349 Score = 60.0 bits (30), Expect = 9e-06 Identities = 60/70 (85%) Strand = Plus / Minus Query: 355 gaacaggttatgcttgcaagaaagggcttcctggtacgcgccggacaggagcacggccac 414 ||||||||| |||||||| | ||||| ||||||||||| || ||||| ||| | ||||| Sbjct: 1617 gaacaggttgtgcttgcacgccagggcctcctggtacgcccccgacagcagcgccgccac 1558 Query: 415 gtagtagccg 424 |||||||||| Sbjct: 1557 gtagtagccg 1548
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 131 bits (66), Expect = 3e-27 Identities = 144/170 (84%) Strand = Plus / Minus Query: 445 gtgcagcggcagcgtgtcggcattgccgatgaacttgtcaacctttccgtcgctgtcgca 504 ||||||||||||||| |||| | || ||||||||| || ||||| |||||||||||||| Sbjct: 457277 gtgcagcggcagcgtcacggcgtcgcggatgaacttctctaccttgccgtcgctgtcgca 457218 Query: 505 tgtgatgtcgatgagcgtgcccatttgagtcggcttctcgttgagccggctcgcgggcat 564 |||||||||| |||||||| | |||||||||||||| ||||||||| | ||||| Sbjct: 457217 ggtgatgtcgaccagcgtgccgttgatggtcggcttctcgttcagccggctcaccggcat 457158 Query: 565 catcgggaagaggtgcttgatgccccagaagtcgggaacgagcgagaaga 614 |||||||||||| || |||||||||||||||||| ||||| ||||||| Sbjct: 457157 catcgggaagagctggccgatgccccagaagtcggggacgagggagaaga 457108 Score = 60.0 bits (30), Expect = 9e-06 Identities = 60/70 (85%) Strand = Plus / Minus Query: 355 gaacaggttatgcttgcaagaaagggcttcctggtacgcgccggacaggagcacggccac 414 ||||||||| |||||||| | ||||| ||||||||||| || ||||| ||| | ||||| Sbjct: 457376 gaacaggttgtgcttgcacgccagggcctcctggtacgcccccgacagcagcgccgccac 457317 Query: 415 gtagtagccg 424 |||||||||| Sbjct: 457316 gtagtagccg 457307
>dbj|AK121110.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023073C19, full insert sequence Length = 2064 Score = 131 bits (66), Expect = 3e-27 Identities = 144/170 (84%) Strand = Plus / Minus Query: 445 gtgcagcggcagcgtgtcggcattgccgatgaacttgtcaacctttccgtcgctgtcgca 504 ||||||||||||||| |||| | || ||||||||| || ||||| |||||||||||||| Sbjct: 1531 gtgcagcggcagcgtcacggcgtcgcggatgaacttctctaccttgccgtcgctgtcgca 1472 Query: 505 tgtgatgtcgatgagcgtgcccatttgagtcggcttctcgttgagccggctcgcgggcat 564 |||||||||| |||||||| | |||||||||||||| ||||||||| | ||||| Sbjct: 1471 ggtgatgtcgaccagcgtgccgttgatggtcggcttctcgttcagccggctcaccggcat 1412 Query: 565 catcgggaagaggtgcttgatgccccagaagtcgggaacgagcgagaaga 614 |||||||||||| || |||||||||||||||||| ||||| ||||||| Sbjct: 1411 catcgggaagagctggccgatgccccagaagtcggggacgagggagaaga 1362 Score = 60.0 bits (30), Expect = 9e-06 Identities = 60/70 (85%) Strand = Plus / Minus Query: 355 gaacaggttatgcttgcaagaaagggcttcctggtacgcgccggacaggagcacggccac 414 ||||||||| |||||||| | ||||| ||||||||||| || ||||| ||| | ||||| Sbjct: 1630 gaacaggttgtgcttgcacgccagggcctcctggtacgcccccgacagcagcgccgccac 1571 Query: 415 gtagtagccg 424 |||||||||| Sbjct: 1570 gtagtagccg 1561
>dbj|AK058573.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-E10, full insert sequence Length = 2119 Score = 131 bits (66), Expect = 3e-27 Identities = 144/170 (84%) Strand = Plus / Minus Query: 445 gtgcagcggcagcgtgtcggcattgccgatgaacttgtcaacctttccgtcgctgtcgca 504 ||||||||||||||| |||| | || ||||||||| || ||||| |||||||||||||| Sbjct: 1600 gtgcagcggcagcgtcacggcgtcgcggatgaacttctctaccttgccgtcgctgtcgca 1541 Query: 505 tgtgatgtcgatgagcgtgcccatttgagtcggcttctcgttgagccggctcgcgggcat 564 |||||||||| |||||||| | |||||||||||||| ||||||||| | ||||| Sbjct: 1540 ggtgatgtcgaccagcgtgccgttgatggtcggcttctcgttcagccggctcaccggcat 1481 Query: 565 catcgggaagaggtgcttgatgccccagaagtcgggaacgagcgagaaga 614 |||||||||||| || |||||||||||||||||| ||||| ||||||| Sbjct: 1480 catcgggaagagctggccgatgccccagaagtcggggacgagggagaaga 1431 Score = 60.0 bits (30), Expect = 9e-06 Identities = 60/70 (85%) Strand = Plus / Minus Query: 355 gaacaggttatgcttgcaagaaagggcttcctggtacgcgccggacaggagcacggccac 414 ||||||||| |||||||| | ||||| ||||||||||| || ||||| ||| | ||||| Sbjct: 1699 gaacaggttgtgcttgcacgccagggcctcctggtacgcccccgacagcagcgccgccac 1640 Query: 415 gtagtagccg 424 |||||||||| Sbjct: 1639 gtagtagccg 1630
>emb|AL606620.3|OSJN00065 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0085F13, complete sequence Length = 130249 Score = 131 bits (66), Expect = 3e-27 Identities = 144/170 (84%) Strand = Plus / Minus Query: 445 gtgcagcggcagcgtgtcggcattgccgatgaacttgtcaacctttccgtcgctgtcgca 504 ||||||||||||||| |||| | || ||||||||| || ||||| |||||||||||||| Sbjct: 96029 gtgcagcggcagcgtcacggcgtcgcggatgaacttctctaccttgccgtcgctgtcgca 95970 Query: 505 tgtgatgtcgatgagcgtgcccatttgagtcggcttctcgttgagccggctcgcgggcat 564 |||||||||| |||||||| | |||||||||||||| ||||||||| | ||||| Sbjct: 95969 ggtgatgtcgaccagcgtgccgttgatggtcggcttctcgttcagccggctcaccggcat 95910 Query: 565 catcgggaagaggtgcttgatgccccagaagtcgggaacgagcgagaaga 614 |||||||||||| || |||||||||||||||||| ||||| ||||||| Sbjct: 95909 catcgggaagagctggccgatgccccagaagtcggggacgagggagaaga 95860 Score = 60.0 bits (30), Expect = 9e-06 Identities = 60/70 (85%) Strand = Plus / Minus Query: 355 gaacaggttatgcttgcaagaaagggcttcctggtacgcgccggacaggagcacggccac 414 ||||||||| |||||||| | ||||| ||||||||||| || ||||| ||| | ||||| Sbjct: 96128 gaacaggttgtgcttgcacgccagggcctcctggtacgcccccgacagcagcgccgccac 96069 Query: 415 gtagtagccg 424 |||||||||| Sbjct: 96068 gtagtagccg 96059
>gb|AY110562.1| Zea mays CL26590_1 mRNA sequence Length = 820 Score = 103 bits (52), Expect = 7e-19 Identities = 106/124 (85%) Strand = Plus / Plus Query: 491 ccgtcgctgtcgcatgtgatgtcgatgagcgtgcccatttgagtcggcttctcgttgagc 550 ||||| |||||||| |||||||| | ||||||||| | ||||||||| ||||||||| Sbjct: 595 ccgtcactgtcgcaggtgatgtccaccagcgtgcccttgagagtcggctcctcgttgagg 654 Query: 551 cggctcgcgggcatcatcgggaagaggtgcttgatgccccagaagtcgggaacgagcgag 610 |||||| | ||||||||||||||||| ||| ||||||||||||||| || || |||||| Sbjct: 655 cggctcaccggcatcatcgggaagagctgcccgatgccccagaagtcaggcaccagcgag 714 Query: 611 aaga 614 |||| Sbjct: 715 aaga 718 Score = 69.9 bits (35), Expect = 9e-09 Identities = 68/79 (86%) Strand = Plus / Plus Query: 345 ttgggccgccgaacaggttatgcttgcaagaaagggcttcctggtacgcgccggacagga 404 ||||||| | ||||||||| ||||||| || || ||| ||||||||||| ||||| | || Sbjct: 449 ttgggccactgaacaggttgtgcttgccagcaatggcctcctggtacgccccggagacga 508 Query: 405 gcacggccacgtagtagcc 423 | ||||||||||||||||| Sbjct: 509 gtacggccacgtagtagcc 527 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Plus Query: 113 gggaccttgtattcgacgaggtagggcatgg 143 ||||||||||||||| |||||||||||||| Sbjct: 199 gggaccttgtattcgttgaggtagggcatgg 229
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 50.1 bits (25), Expect = 0.009 Identities = 40/45 (88%) Strand = Plus / Minus Query: 471 cgatgaacttgtcaacctttccgtcgctgtcgcatgtgatgtcga 515 |||||||||| || | ||| |||||||||||||| |||||||||| Sbjct: 1888220 cgatgaacttctcgatcttgccgtcgctgtcgcaggtgatgtcga 1888176
>gb|AC154317.2| Mus musculus BAC clone RP23-346H4 from chromosome 13, complete sequence Length = 205164 Score = 48.1 bits (24), Expect = 0.034 Identities = 24/24 (100%) Strand = Plus / Plus Query: 166 cacccccaccttctcccacacctc 189 |||||||||||||||||||||||| Sbjct: 3895 cacccccaccttctcccacacctc 3918
>gb|AF045683.1|AF045683 Brassica oleracea isolate ADC-O arginine decarboxylase (spe2) gene, partial cds Length = 1205 Score = 48.1 bits (24), Expect = 0.034 Identities = 30/32 (93%) Strand = Plus / Minus Query: 473 atgaacttgtcaacctttccgtcgctgtcgca 504 ||||||||||||| ||| |||||||||||||| Sbjct: 1205 atgaacttgtcaatcttcccgtcgctgtcgca 1174
>gb|AF045682.1|AF045682 Brassica nigra isolate ADC-O arginine decarboxylase (spe2) gene, partial cds Length = 1205 Score = 48.1 bits (24), Expect = 0.034 Identities = 30/32 (93%) Strand = Plus / Minus Query: 473 atgaacttgtcaacctttccgtcgctgtcgca 504 ||||||||||||| ||| |||||||||||||| Sbjct: 1205 atgaacttgtcaatcttcccgtcgctgtcgca 1174
>gb|AC154662.2| Mus musculus BAC clone RP24-279F20 from chromosome 13, complete sequence Length = 170831 Score = 48.1 bits (24), Expect = 0.034 Identities = 24/24 (100%) Strand = Plus / Plus Query: 166 cacccccaccttctcccacacctc 189 |||||||||||||||||||||||| Sbjct: 135759 cacccccaccttctcccacacctc 135782
>emb|X86030.1|VURNEXT26 V.unguiculata mRNA for extensine-like protein, ext26 Length = 710 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Plus Query: 166 cacccccaccttctcccacacctccttctcc 196 ||||||||||||||||| |||||||| |||| Sbjct: 179 cacccccaccttctccctcacctcctcctcc 209
>emb|X91836.1|VUEXT26GN V.unguiculata Ext26G gene Length = 3609 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Plus Query: 166 cacccccaccttctcccacacctccttctcc 196 ||||||||||||||||| |||||||| |||| Sbjct: 2915 cacccccaccttctccctcacctcctcctcc 2945
>dbj|AP006639.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT25N16, TM0216, complete sequence Length = 95667 Score = 46.1 bits (23), Expect = 0.14 Identities = 32/35 (91%) Strand = Plus / Minus Query: 470 ccgatgaacttgtcaacctttccgtcgctgtcgca 504 |||||||||||||||| ||| ||||| |||||||| Sbjct: 62365 ccgatgaacttgtcaatcttcccgtcactgtcgca 62331
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 44.1 bits (22), Expect = 0.54 Identities = 28/30 (93%) Strand = Plus / Plus Query: 485 acctttccgtcgctgtcgcatgtgatgtcg 514 ||||| |||||||||||||| ||||||||| Sbjct: 621357 accttgccgtcgctgtcgcaggtgatgtcg 621386
>ref|XM_493706.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2109 Score = 44.1 bits (22), Expect = 0.54 Identities = 40/46 (86%) Strand = Plus / Minus Query: 469 gccgatgaacttgtcaacctttccgtcgctgtcgcatgtgatgtcg 514 ||||||||| | ||| ||||| |||||||||||||| |||| |||| Sbjct: 1653 gccgatgaagtggtcgaccttgccgtcgctgtcgcaggtgaggtcg 1608
>gb|AY604047.1| Oryza sativa (japonica cultivar-group) arginine decarboxylase (ADC1) mRNA, complete cds Length = 2451 Score = 44.1 bits (22), Expect = 0.54 Identities = 40/46 (86%) Strand = Plus / Minus Query: 469 gccgatgaacttgtcaacctttccgtcgctgtcgcatgtgatgtcg 514 ||||||||| | ||| ||||| |||||||||||||| |||| |||| Sbjct: 1671 gccgatgaagtggtcgaccttgccgtcgctgtcgcaggtgaggtcg 1626
>ref|NM_204938.1| Gallus gallus apolipoprotein A-IV (APOA4), mRNA Length = 1199 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Minus Query: 171 ccaccttctcccacacctccttctcc 196 |||||||||||| ||||||||||||| Sbjct: 1099 ccaccttctcccgcacctccttctcc 1074
>emb|CR406924.1| Gallus gallus finished cDNA, clone ChEST152i8 Length = 598 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Minus Query: 171 ccaccttctcccacacctccttctcc 196 |||||||||||| ||||||||||||| Sbjct: 492 ccaccttctcccgcacctccttctcc 467
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.54 Identities = 40/46 (86%) Strand = Plus / Plus Query: 469 gccgatgaacttgtcaacctttccgtcgctgtcgcatgtgatgtcg 514 ||||||||| | ||| ||||| |||||||||||||| |||| |||| Sbjct: 1674113 gccgatgaagtggtcgaccttgccgtcgctgtcgcaggtgaggtcg 1674158
>dbj|AP000559.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone:P0493C11 Length = 143113 Score = 44.1 bits (22), Expect = 0.54 Identities = 40/46 (86%) Strand = Plus / Plus Query: 469 gccgatgaacttgtcaacctttccgtcgctgtcgcatgtgatgtcg 514 ||||||||| | ||| ||||| |||||||||||||| |||| |||| Sbjct: 77284 gccgatgaagtggtcgaccttgccgtcgctgtcgcaggtgaggtcg 77329
>emb|Y16534.1|GGA16534 Gallus gallus mRNA for apolipoprotein AIV Length = 1199 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Minus Query: 171 ccaccttctcccacacctccttctcc 196 |||||||||||| ||||||||||||| Sbjct: 1099 ccaccttctcccgcacctccttctcc 1074
>gb|U35367.1|GMU35367 Glycine max arginine decarboxylase mRNA, complete cds Length = 2783 Score = 44.1 bits (22), Expect = 0.54 Identities = 28/30 (93%) Strand = Plus / Minus Query: 472 gatgaacttgtcaacctttccgtcgctgtc 501 |||||||||||||| ||| ||||||||||| Sbjct: 2019 gatgaacttgtcaatcttcccgtcgctgtc 1990
>gb|AC171017.3| Gallus gallus BAC clone CH261-1F11 from chromosome ul, complete sequence Length = 189284 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Minus Query: 171 ccaccttctcccacacctccttctcc 196 |||||||||||| ||||||||||||| Sbjct: 40214 ccaccttctcccgcacctccttctcc 40189
>gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 6, complete sequence Length = 1438950 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 174 ccttctcccacacctccttctccct 198 ||||||||| ||||||||||||||| Sbjct: 996692 ccttctcccgcacctccttctccct 996668
>gb|AC109596.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1593_C11, complete sequence Length = 112065 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 300 ggaagccaccaccaccgtcgg 320 ||||||||||||||||||||| Sbjct: 58022 ggaagccaccaccaccgtcgg 58002
>ref|XM_883359.1| PREDICTED: Bos taurus hypothetical protein LOC618541 (LOC618541), mRNA Length = 1541 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 155 gcctccacgaacacccccaccttctccca 183 ||||||| |||| |||||||||||||||| Sbjct: 500 gcctccaggaacgcccccaccttctccca 472
>gb|AC133156.7| Mus musculus chromosome 15, clone RP24-291M22, complete sequence Length = 151577 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 168 cccccaccttctcccacacctccttctcc 196 ||||||||| ||||||| ||||||||||| Sbjct: 104573 cccccacctcctcccactcctccttctcc 104601
>ref|XM_823797.1| Trypanosoma brucei TREU927 dynein heavy chain (Tb11.01.0390) partial mRNA Length = 12459 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 507 tgatgtcgatgagcgtgccca 527 ||||||||||||||||||||| Sbjct: 873 tgatgtcgatgagcgtgccca 893
>ref|XM_571648.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNF03370) partial mRNA Length = 4415 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 174 ccttctcccacacctccttctccct 198 ||||||||| ||||||||||||||| Sbjct: 2164 ccttctcccgcacctccttctccct 2140
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 447 gcagcggcagcgtgtcggcattgcc 471 ||||||||||||||||||| ||||| Sbjct: 3029855 gcagcggcagcgtgtcggcgttgcc 3029831 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 447 gcagcggcagcgtgtcggcattgcc 471 ||||| ||||||||||||||||||| Sbjct: 426148 gcagcagcagcgtgtcggcattgcc 426172 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 439 cagcgtgtgcagcggcagcg 458 |||||||||||||||||||| Sbjct: 1768977 cagcgtgtgcagcggcagcg 1768996
>gb|BC112446.1| Bos taurus cDNA clone IMAGE:8049149 Length = 2281 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 177 tctcccacacctccttctccc 197 ||||||||||||||||||||| Sbjct: 1358 tctcccacacctccttctccc 1378
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 300 ggaagccaccaccaccgtcgg 320 ||||||||||||||||||||| Sbjct: 25954895 ggaagccaccaccaccgtcgg 25954875
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 448 cagcggcagcgtgtcggcattgcc 471 |||||||||||||| ||||||||| Sbjct: 3685117 cagcggcagcgtgtgggcattgcc 3685094
>gb|BC084900.1| Xenopus tropicalis telomerase binding protein, p23, mRNA (cDNA clone MGC:89457 IMAGE:6991382), complete cds Length = 2068 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 gaacacccccaccttctccc 182 |||||||||||||||||||| Sbjct: 918 gaacacccccaccttctccc 899
>gb|U42580.4|PBU42580 Paramecium bursaria Chlorella virus 1, complete genome Length = 330743 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 174 ccttctcccacacctccttctccc 197 |||||||||| ||||||||||||| Sbjct: 31397 ccttctcccaaacctccttctccc 31420 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 174 ccttctcccacacctccttctccc 197 |||||||||| ||||||||||||| Sbjct: 31382 ccttctcccaaacctccttctccc 31405 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 174 ccttctcccacacctccttctccc 197 |||||||||| ||||||||||||| Sbjct: 31367 ccttctcccaaacctccttctccc 31390 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 174 ccttctcccacacctccttctccc 197 |||||||||| ||||||||||||| Sbjct: 31307 ccttctcccaaacctccttctccc 31330 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 174 ccttctcccacacctccttctccc 197 |||||||||| ||||||||||||| Sbjct: 31292 ccttctcccaaacctccttctccc 31315 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 174 ccttctcccacacctccttctccc 197 |||||||||| ||||||||||||| Sbjct: 31277 ccttctcccaaacctccttctccc 31300 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 174 ccttctcccacacctccttctccc 197 |||||||||| ||||||||||||| Sbjct: 31262 ccttctcccaaacctccttctccc 31285 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 174 ccttctcccacacctccttctccc 197 |||||||||| ||||||||||||| Sbjct: 31247 ccttctcccaaacctccttctccc 31270 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 174 ccttctcccacacctccttctccc 197 |||||||||| ||||||||||||| Sbjct: 31187 ccttctcccaaacctccttctccc 31210 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 174 ccttctcccacacctccttctccc 197 |||||||||| ||||||||||||| Sbjct: 31172 ccttctcccaaacctccttctccc 31195 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 174 ccttctcccacacctccttctccc 197 |||||||||| ||||||||||||| Sbjct: 31157 ccttctcccaaacctccttctccc 31180
>ref|XM_363686.1| Magnaporthe grisea 70-15 hypothetical protein (MG01612.4) partial mRNA Length = 1833 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 cgtcggtgttgttctcgacc 334 |||||||||||||||||||| Sbjct: 827 cgtcggtgttgttctcgacc 846
>gb|AC005997.3| Homo sapiens PAC clone RP4-558L10 from 7, complete sequence Length = 143250 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 65 aaaagaaatagcatgaaata 84 |||||||||||||||||||| Sbjct: 111631 aaaagaaatagcatgaaata 111612
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 40.1 bits (20), Expect = 8.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 388 gtacgcgccggacaggagcacggccacg 415 |||||| |||| |||||||||||||||| Sbjct: 3100844 gtacgccccgggcaggagcacggccacg 3100871
>emb|CT030427.1| Xenopus tropicalis finished cDNA, clone TGas090m01 Length = 1828 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 gaacacccccaccttctccc 182 |||||||||||||||||||| Sbjct: 836 gaacacccccaccttctccc 817
>emb|AJ872218.1| Festuca glaucescens x Lolium multiflorum microsatellite DNA, clone B1-C8 Length = 365 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 aaatagcatgaaatatgaat 89 |||||||||||||||||||| Sbjct: 172 aaatagcatgaaatatgaat 191
>gb|AC137749.11| Mus musculus chromosome 6, clone RP23-69C16, complete sequence Length = 293695 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 cccacacctccttctccctg 199 |||||||||||||||||||| Sbjct: 241511 cccacacctccttctccctg 241530
>emb|CR376738.9| Zebrafish DNA sequence from clone DKEY-97H16 in linkage group 7, complete sequence Length = 118757 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 agcatgaaatatgaatcacg 93 |||||||||||||||||||| Sbjct: 110411 agcatgaaatatgaatcacg 110430
>emb|AL121990.34|HSDJ613A2 Human DNA sequence from clone RP4-613A2 on chromosome 1q42.11-42.3 Contains the 5' end of the NUP133 gene, a novel gene, the ABCB10 gene for ATP-binding cassette, sub-family B (MDR/TAP), member 10, a high-mobility group nucleosomal binding domain 2 (HMGN2) pseudogene, the TAF5L gene for TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor, 65kDa, the 5' end of a novel gene (KIAA0133) and three CpG islands, complete sequence Length = 147913 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 170 cccaccttctcccacacctccttc 193 ||||||||||||||||||| |||| Sbjct: 37207 cccaccttctcccacacctacttc 37184
>emb|CR671595.2|CNS0FH69 Tetraodon nigroviridis full-length cDNA Length = 686 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 caccaccaccgtcggtgttg 325 |||||||||||||||||||| Sbjct: 46 caccaccaccgtcggtgttg 27
>ref|XM_673219.1| Plasmodium berghei strain ANKA initiation factor 2 subunit (PB001057.00.0) partial mRNA Length = 3072 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 atgaatcacgatgaaattag 103 |||||||||||||||||||| Sbjct: 2386 atgaatcacgatgaaattag 2405
>gb|AC036121.11| Mus musculus chromosome 6, clone RP23-158O9, complete sequence Length = 215685 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 cccacacctccttctccctg 199 |||||||||||||||||||| Sbjct: 132890 cccacacctccttctccctg 132909
>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome Length = 5205140 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 309 caccaccgtcggtgttgttctcga 332 |||||||||||||||||| ||||| Sbjct: 2863711 caccaccgtcggtgttgtcctcga 2863688
>emb|AL590450.1|CNS07EGH chromosome XI of strain GB-M1 of Encephalitozoon cuniculi (Microspora) Length = 267509 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 357 acaggttatgcttgcaagaaaggg 380 ||||||||| |||||||||||||| Sbjct: 126724 acaggttattcttgcaagaaaggg 126701
>gb|AC100822.2| Homo sapiens chromosome 8, clone RP11-654O1, complete sequence Length = 186380 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 acacccccaccttctcccac 184 |||||||||||||||||||| Sbjct: 28794 acacccccaccttctcccac 28813
>gb|AC108095.2| Homo sapiens chromosome 5 clone CTD-3080F23, complete sequence Length = 149102 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 174 ccttctcccacacctccttctccc 197 ||||||||| |||||||||||||| Sbjct: 128892 ccttctcccccacctccttctccc 128915
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 446 tgcagcggcagcgtgtcggc 465 |||||||||||||||||||| Sbjct: 384548 tgcagcggcagcgtgtcggc 384567
>tpg|BK000438.1| TPA: TPA_exp: Homo sapiens RING finger protein COP1 gene, complete cds Length = 421987 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 cacctccttctccctggccc 203 |||||||||||||||||||| Sbjct: 261679 cacctccttctccctggccc 261698
>ref|NM_001007104.1| Xenopus tropicalis telomerase binding protein, p23 (tebp), mRNA Length = 2068 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 gaacacccccaccttctccc 182 |||||||||||||||||||| Sbjct: 918 gaacacccccaccttctccc 899
>gb|AC139723.1| Homo sapiens BAC clone RP11-158J14 from 2, complete sequence Length = 7290 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 cacctccttctccctggccc 203 |||||||||||||||||||| Sbjct: 2484 cacctccttctccctggccc 2465
>gb|AC008553.4|AC008553 Homo sapiens chromosome 5 clone CTC-512C13, complete sequence Length = 91172 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 174 ccttctcccacacctccttctccc 197 ||||||||| |||||||||||||| Sbjct: 42243 ccttctcccccacctccttctccc 42220
>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome Length = 5277274 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 309 caccaccgtcggtgttgttctcga 332 |||||||||||||||||| ||||| Sbjct: 2752488 caccaccgtcggtgttgtcctcga 2752465
>gb|AC005005.1|AC005005 Homo sapiens PAC clone RP3-412A9 from 22, complete sequence Length = 133893 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 atgtggaagccaccaccacc 315 |||||||||||||||||||| Sbjct: 123603 atgtggaagccaccaccacc 123584
>emb|BX510941.5| Zebrafish DNA sequence from clone DKEY-155D18 in linkage group 20, complete sequence Length = 183212 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 570 ggaagaggtgcttgatgccccaga 593 |||||||| ||||||||||||||| Sbjct: 166151 ggaagaggagcttgatgccccaga 166128
>emb|CR855476.2| Xenopus tropicalis finished cDNA, clone TNeu075p17 Length = 2023 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 gaacacccccaccttctccc 182 |||||||||||||||||||| Sbjct: 901 gaacacccccaccttctccc 882
>emb|AL355922.4|CNS05TD4 Human chromosome 14 DNA sequence BAC R-84C10 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 157979 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 gcttgcaagaaagggcttcc 385 |||||||||||||||||||| Sbjct: 81502 gcttgcaagaaagggcttcc 81521
>gb|AF045690.1| Nasturtium officinale isolate ADC-O arginine decarboxylase (spe2) gene, partial cds Length = 1217 Score = 40.1 bits (20), Expect = 8.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 473 atgaacttgtcaacctttccgtcgctgtcgca 504 ||||||||||| | ||| |||||||||||||| Sbjct: 1217 atgaacttgtccatcttcccgtcgctgtcgca 1186
>gb|AF045689.1| Thellungiella salsuginea isolate ADC-O arginine decarboxylase (spe2) gene, partial cds Length = 1211 Score = 40.1 bits (20), Expect = 8.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 473 atgaacttgtcaacctttccgtcgctgtcgca 504 ||||||||||| | ||| |||||||||||||| Sbjct: 1211 atgaacttgtctatcttcccgtcgctgtcgca 1180
>gb|AF045688.1|AF045688 Thlaspi arvense isolate ADC-O arginine decarboxylase (spe2) gene, partial cds Length = 1211 Score = 40.1 bits (20), Expect = 8.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 473 atgaacttgtcaacctttccgtcgctgtcgca 504 ||||||||||| | ||| |||||||||||||| Sbjct: 1211 atgaacttgtctatcttcccgtcgctgtcgca 1180
>gb|AF045687.1|AF045687 Stanleya pinnata isolate ADC-O arginine decarboxylase (spe2) gene, partial cds Length = 1211 Score = 40.1 bits (20), Expect = 8.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 473 atgaacttgtcaacctttccgtcgctgtcgca 504 ||||||||||| | ||| |||||||||||||| Sbjct: 1211 atgaacttgtctatcttcccgtcgctgtcgca 1180
>gb|AF045686.1|AF045686 Sisymbrium altissimum isolate ADC-O arginine decarboxylase (spe2) gene, partial cds Length = 1211 Score = 40.1 bits (20), Expect = 8.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 473 atgaacttgtcaacctttccgtcgctgtcgca 504 ||||||||||| | ||| |||||||||||||| Sbjct: 1211 atgaacttgtctatcttcccgtcgctgtcgca 1180
>gb|AF045685.1| Arabidopsis arenosa isolate ADC-O arginine decarboxylase (spe2) gene, partial cds Length = 1217 Score = 40.1 bits (20), Expect = 8.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 473 atgaacttgtcaacctttccgtcgctgtcgca 504 ||||||||||| | ||| |||||||||||||| Sbjct: 1217 atgaacttgtcgatcttaccgtcgctgtcgca 1186
>gb|AF045684.1| Capsella bursa-pastoris isolate ADC-O arginine decarboxylase (spe2) gene, partial cds Length = 1217 Score = 40.1 bits (20), Expect = 8.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 473 atgaacttgtcaacctttccgtcgctgtcgca 504 ||||||||||| | ||| |||||||||||||| Sbjct: 1217 atgaacttgtcgatcttaccgtcgctgtcgca 1186
>gb|AF045681.1|AF045681 Barbarea vulgaris isolate ADC-O arginine decarboxylase (spe2) gene, partial cds Length = 1217 Score = 40.1 bits (20), Expect = 8.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 473 atgaacttgtcaacctttccgtcgctgtcgca 504 ||||||||||| | ||| |||||||||||||| Sbjct: 1217 atgaacttgtctatcttcccgtcgctgtcgca 1186
>gb|AF045680.1|AF045680 Arabis drummondii isolate ADC-O arginine decarboxylase (spe2) gene, partial cds Length = 1217 Score = 40.1 bits (20), Expect = 8.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 473 atgaacttgtcaacctttccgtcgctgtcgca 504 ||||||||||| | ||| |||||||||||||| Sbjct: 1217 atgaacttgtccatcttgccgtcgctgtcgca 1186
>gb|AF045675.1|AF045675 Sisymbrium altissimum isolate ADC-N arginine decarboxylase (spe2) gene, partial cds Length = 1223 Score = 40.1 bits (20), Expect = 8.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 473 atgaacttgtcaacctttccgtcgctgtcgca 504 ||||||||||| | ||| |||||||||||||| Sbjct: 1223 atgaacttgtcgatcttgccgtcgctgtcgca 1192
>emb|AL590723.13| Human DNA sequence from clone RP11-492I21 on chromosome 1 Contains part of the gene for constitutive photomorphogenic protein (COP1) and a novel gene, complete sequence Length = 178223 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 cacctccttctccctggccc 203 |||||||||||||||||||| Sbjct: 80891 cacctccttctccctggccc 80872
>emb|AL669828.13| Mouse DNA sequence from clone RP23-163J20 on chromosome 2, complete sequence Length = 248940 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 170 cccaccttctcccacacctccttc 193 ||||||||||||| |||||||||| Sbjct: 205368 cccaccttctccctcacctccttc 205345 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,367,449 Number of Sequences: 3902068 Number of extensions: 4367449 Number of successful extensions: 96348 Number of sequences better than 10.0: 74 Number of HSP's better than 10.0 without gapping: 74 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 95790 Number of HSP's gapped (non-prelim): 558 length of query: 614 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 591 effective length of database: 17,143,297,704 effective search space: 10131688943064 effective search space used: 10131688943064 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)