ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags1c04 |
|---|---|
| Clone Library Name | barley_pub |
>VA0D2_ARATH (Q9LHA4) Probable vacuolar ATP synthase subunit d 2 (EC 3.6.3.14)| (V-ATPase d subunit 2) (Vacuolar proton pump d subunit 2) Length = 351 Score = 224 bits (570), Expect = 2e-58 Identities = 103/118 (87%), Positives = 116/118 (98%) Frame = -2 Query: 681 RDDRRKLYSNFGLLFPYGHEELAVCEDVDQVRGVMEKYPPYQSIFAKISYGESQMLDKAF 502 R+DR+KLYSNFGLL+PYGHEELA+CED+DQVRGVMEKYPPYQ+IF+K+SYGESQMLDKAF Sbjct: 234 REDRKKLYSNFGLLYPYGHEELAICEDIDQVRGVMEKYPPYQAIFSKMSYGESQMLDKAF 293 Query: 501 YEEEVKRLRLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSVVTIF 328 YEEEV+RL L+FEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQK+R+HDSVV +F Sbjct: 294 YEEEVRRLCLAFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKSRIHDSVVYMF 351
>VA0D1_ARATH (Q9LJI5) Probable vacuolar ATP synthase subunit d 1 (EC 3.6.3.14)| (V-ATPase d subunit 1) (Vacuolar proton pump d subunit 1) Length = 351 Score = 224 bits (570), Expect = 2e-58 Identities = 103/118 (87%), Positives = 116/118 (98%) Frame = -2 Query: 681 RDDRRKLYSNFGLLFPYGHEELAVCEDVDQVRGVMEKYPPYQSIFAKISYGESQMLDKAF 502 R+DR+KLYSNFGLL+PYGHEELA+CED+DQVRGVMEKYPPYQ+IF+K+SYGESQMLDKAF Sbjct: 234 REDRKKLYSNFGLLYPYGHEELAICEDIDQVRGVMEKYPPYQAIFSKMSYGESQMLDKAF 293 Query: 501 YEEEVKRLRLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSVVTIF 328 YEEEV+RL L+FEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQK+R+HDSVV +F Sbjct: 294 YEEEVRRLCLAFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKSRIHDSVVYMF 351
>VA0D_DICDI (P54641) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase 41 kDa accessory protein) (DVA41) Length = 356 Score = 119 bits (299), Expect = 7e-27 Identities = 53/114 (46%), Positives = 81/114 (71%) Frame = -2 Query: 681 RDDRRKLYSNFGLLFPYGHEELAVCEDVDQVRGVMEKYPPYQSIFAKISYGESQMLDKAF 502 +DDR KLY + GLL+P G +L EDVDQVRG++E Y Y++ F+ + L+ +F Sbjct: 241 KDDREKLYPSLGLLYPEGTSKLGKAEDVDQVRGILEVYSTYRNFFSD-GVNNEKSLEDSF 299 Query: 501 YEEEVKRLRLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSV 340 +E EV R++FE Q+ Y VF+AY++LREQEIRN++WI+EC++QN K +++ + Sbjct: 300 FEHEVHLNRMAFEDQYGYGVFYAYIKLREQEIRNIVWIAECISQNMKQKMNQYI 353
>VA0D1_DROME (Q9W4P5) Vacuolar ATP synthase subunit d 1 (EC 3.6.3.14) (V-ATPase| d subunit 1) (Vacuolar proton pump d subunit 1) (V-ATPase 39 kDa subunit 1) Length = 350 Score = 101 bits (251), Expect = 2e-21 Identities = 53/120 (44%), Positives = 80/120 (66%), Gaps = 2/120 (1%) Frame = -2 Query: 681 RDDRRKLYSNFGLLFPYGHEELAVCEDVDQVRGVMEKYPPYQSIF--AKISYGESQMLDK 508 +DDR KLY N G ++P G LA +D +QV+ V E Y Y ++F + + G+ + DK Sbjct: 233 KDDRAKLYPNCGKMYPDGLAALARADDYEQVKTVAEYYAEYAALFDGSGNNPGDKTLEDK 292 Query: 507 AFYEEEVKRLRLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSVVTIF 328 F+E EVK +F QQFH+ VF+AY++L+EQE RN++WI+ECVAQ + ++ D+ + IF Sbjct: 293 -FFEHEVKLDVYAFLQQFHFGVFYAYLKLKEQECRNIVWIAECVAQKHRAKI-DNYIPIF 350
>VA0D_PONPY (Q5R6I1) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) Length = 351 Score = 101 bits (251), Expect = 2e-21 Identities = 49/120 (40%), Positives = 83/120 (69%), Gaps = 2/120 (1%) Frame = -2 Query: 681 RDDRRKLYSNFGLLFPYGHEELAVCEDVDQVRGVMEKYPPYQSIF--AKISYGESQMLDK 508 ++DR KL+ + G L+P G +LA +D +QV+ V + YP Y+ +F A + G+ + D+ Sbjct: 234 KEDRAKLFPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGDKTLEDR 293 Query: 507 AFYEEEVKRLRLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSVVTIF 328 F+E EVK +L+F QFH+ VF+A+++L+EQE RN++WI+EC+AQ + ++ D+ + IF Sbjct: 294 -FFEHEVKLNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKI-DNYIPIF 351
>VA0D_MOUSE (P51863) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase AC39 subunit) (V-ATPase 40 kDa accessory protein) (P39) (Physophilin) Length = 351 Score = 101 bits (251), Expect = 2e-21 Identities = 49/120 (40%), Positives = 83/120 (69%), Gaps = 2/120 (1%) Frame = -2 Query: 681 RDDRRKLYSNFGLLFPYGHEELAVCEDVDQVRGVMEKYPPYQSIF--AKISYGESQMLDK 508 ++DR KL+ + G L+P G +LA +D +QV+ V + YP Y+ +F A + G+ + D+ Sbjct: 234 KEDRAKLFPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGDKTLEDR 293 Query: 507 AFYEEEVKRLRLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSVVTIF 328 F+E EVK +L+F QFH+ VF+A+++L+EQE RN++WI+EC+AQ + ++ D+ + IF Sbjct: 294 -FFEHEVKLNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKI-DNYIPIF 351
>VA0D_HUMAN (P61421) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase AC39 subunit) (V-ATPase 40 kDa accessory protein) (P39) (32 kDa accessory protein) Length = 351 Score = 101 bits (251), Expect = 2e-21 Identities = 49/120 (40%), Positives = 83/120 (69%), Gaps = 2/120 (1%) Frame = -2 Query: 681 RDDRRKLYSNFGLLFPYGHEELAVCEDVDQVRGVMEKYPPYQSIF--AKISYGESQMLDK 508 ++DR KL+ + G L+P G +LA +D +QV+ V + YP Y+ +F A + G+ + D+ Sbjct: 234 KEDRAKLFPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGDKTLEDR 293 Query: 507 AFYEEEVKRLRLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSVVTIF 328 F+E EVK +L+F QFH+ VF+A+++L+EQE RN++WI+EC+AQ + ++ D+ + IF Sbjct: 294 -FFEHEVKLNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKI-DNYIPIF 351
>VA0D_BOVIN (P61420) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase AC39 subunit) (V-ATPase 40 kDa accessory protein) (P39) (32 kDa accessory protein) Length = 351 Score = 101 bits (251), Expect = 2e-21 Identities = 49/120 (40%), Positives = 83/120 (69%), Gaps = 2/120 (1%) Frame = -2 Query: 681 RDDRRKLYSNFGLLFPYGHEELAVCEDVDQVRGVMEKYPPYQSIF--AKISYGESQMLDK 508 ++DR KL+ + G L+P G +LA +D +QV+ V + YP Y+ +F A + G+ + D+ Sbjct: 234 KEDRAKLFPHCGRLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGDKTLEDR 293 Query: 507 AFYEEEVKRLRLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSVVTIF 328 F+E EVK +L+F QFH+ VF+A+++L+EQE RN++WI+EC+AQ + ++ D+ + IF Sbjct: 294 -FFEHEVKLNKLAFLNQFHFGVFYAFVKLKEQECRNIVWIAECIAQRHRAKI-DNYIPIF 351
>VA0D_NEUCR (P53659) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase 41 kDa subunit) Length = 364 Score = 99.0 bits (245), Expect = 1e-20 Identities = 49/126 (38%), Positives = 78/126 (61%), Gaps = 14/126 (11%) Frame = -2 Query: 675 DRRKLYSNFGLLFPYGHEELAVCEDVDQVRGVMEKYPPYQSIFAKISYG----------- 529 DR+KLY NFG L+P G L+ +D + VR +E Y+S F G Sbjct: 236 DRKKLYPNFGQLYPEGTLMLSRADDFEGVRLAVEGVADYKSFFDAAGLGGGPSGPGNMGG 295 Query: 528 ---ESQMLDKAFYEEEVKRLRLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKN 358 E + L+ FY++E++ +++F +QF YA+ +A+++LREQEIRN+ WI+EC+AQNQK Sbjct: 296 GGTEGKSLEDMFYQKEMEISKMAFTRQFTYAIVYAWVKLREQEIRNITWIAECIAQNQKE 355 Query: 357 RVHDSV 340 R+++ + Sbjct: 356 RINNYI 361
>VA0D_MANSE (Q25531) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase 40 kDa subunit) (M40) Length = 348 Score = 98.2 bits (243), Expect = 2e-20 Identities = 53/120 (44%), Positives = 77/120 (64%), Gaps = 2/120 (1%) Frame = -2 Query: 681 RDDRRKLYSNFGLLFPYGHEELAVCEDVDQVRGVMEKYPPYQSIF--AKISYGESQMLDK 508 +DDR KLY G L P G LA +D +QV+ V E Y Y ++F A + G+ + DK Sbjct: 231 KDDRAKLYPRCGKLNPDGLAALARADDYEQVKAVAEYYAEYSALFEGAGNNVGDKTLEDK 290 Query: 507 AFYEEEVKRLRLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSVVTIF 328 F+E EV +F QQFH+ VF++Y++L+EQE RN++WISECVAQ + ++ D+ + IF Sbjct: 291 -FFEHEVNLNVHAFLQQFHFGVFYSYLKLKEQECRNIVWISECVAQKHRAKI-DNYIPIF 348
>VA0D_SCHPO (O13753) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase 39 kDa subunit) (V-ATPase subunit M39) Length = 343 Score = 94.0 bits (232), Expect = 4e-19 Identities = 45/109 (41%), Positives = 69/109 (63%) Frame = -2 Query: 681 RDDRRKLYSNFGLLFPYGHEELAVCEDVDQVRGVMEKYPPYQSIFAKISYGESQMLDKAF 502 +++R K+Y +FG L+P+ LA E+ V Y F + S + LD F Sbjct: 230 KEERAKMYPSFGRLYPFSTSILARAENAGDVENACSLVKEYSDFFDQNS---QKSLDDHF 286 Query: 501 YEEEVKRLRLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNR 355 E+EV+ +L+F QQFHY + +A+++LREQEIRNL WI+EC++QNQ++R Sbjct: 287 NEKEVELNKLAFLQQFHYGIVYAFLKLREQEIRNLTWIAECISQNQRDR 335
>VA0D_YEAST (P32366) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase 39 kDa subunit) (V-ATPase subunit M39) Length = 345 Score = 74.7 bits (182), Expect = 2e-13 Identities = 38/113 (33%), Positives = 64/113 (56%) Frame = -2 Query: 678 DDRRKLYSNFGLLFPYGHEELAVCEDVDQVRGVMEKYPPYQSIFAKISYGESQMLDKAFY 499 D + L N G L+P LA +D + VR + Y+ E+ L+ FY Sbjct: 236 DLKSDLLPNIGKLYPLATFHLAQAQDFEGVRAALANVYEYRGFL------ETGNLEDHFY 289 Query: 498 EEEVKRLRLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVHDSV 340 + E++ R +F QQF + +A+M+ +EQE+RN+ WI+EC+AQNQ+ R+++ + Sbjct: 290 QLEMELCRDAFTQQFAISTVWAWMKSKEQEVRNITWIAECIAQNQRERINNYI 342
>VA0D2_DROME (Q9VCQ3) Probable vacuolar ATP synthase subunit d 2 (EC 3.6.3.14)| (V-ATPase d subunit 2) (Vacuolar proton pump d subunit 2) (V-ATPase 39 kDa subunit 2) Length = 350 Score = 72.4 bits (176), Expect = 1e-12 Identities = 33/111 (29%), Positives = 63/111 (56%), Gaps = 2/111 (1%) Frame = -2 Query: 675 DRRKLYSNFGLLFPYGHEELAVCEDVDQVRGVMEKYPPYQSIFAKISYGESQM--LDKAF 502 +R K++ G L ++ D D++R V + Y +F + M L+ F Sbjct: 232 ERLKMFPTCGYLPKIALASMSTLNDTDKIRDVCNVFDGYGKMFDNLERDSDGMITLEDRF 291 Query: 501 YEEEVKRLRLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVH 349 E K+ +F QQ+H+ +F+++++L++ E+RN++WISEC+AQ Q +R++ Sbjct: 292 LMMEAKKNVQTFLQQYHFGIFYSFIKLKQLEVRNIVWISECIAQRQTDRIN 342
>HMCT_BOMMO (P98092) Hemocytin precursor (Humoral lectin)| Length = 3133 Score = 32.3 bits (72), Expect = 1.4 Identities = 18/56 (32%), Positives = 25/56 (44%) Frame = +3 Query: 348 HGPCSSGSGQRIRRSTSSSLSPALVASCTQRKQHSGTAVRMTGAASLLPPHRRPCP 515 HG C SG+ + T S C Q ++SG +VR+T + PHR P Sbjct: 3017 HGSCDSGTIYNNQTGTHES-----ACECCQAAKYSGVSVRLTCEDGTVRPHRVATP 3067
>LMO6_HUMAN (O43900) LIM domain only protein 6 (Triple LIM domain protein 6)| Length = 615 Score = 30.0 bits (66), Expect = 6.8 Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 1/67 (1%) Frame = +3 Query: 327 KRSSRRCHGPCSSGSGQRIRRSTSSSLSPALVASCTQRKQHSGTAVRMTGAASLLPPHR- 503 + SRR H C +GSG S S S S + +S ++ + G G LPPH Sbjct: 524 RHPSRRRHYQCDAGSG-----SDSESCSSSPSSSSSESSEDDGF---FLGERIPLPPHLC 575 Query: 504 RPCPTSD 524 RP P D Sbjct: 576 RPMPAQD 582
>Y3550_ARATH (Q9MA63) Protein At3g05500| Length = 246 Score = 29.6 bits (65), Expect = 8.9 Identities = 18/72 (25%), Positives = 35/72 (48%) Frame = +1 Query: 244 ELIKSAIDCAIIKAGLLYSHMHSNRGRLKDRHDAVMDPVLLVLGNAFGDPHQVPYLLLS* 423 + +++A A+++ L+Y+ G LK ++V V V+G + H VP +L Sbjct: 26 QFVQAAAVEALLRFALIYAKAKDKSGPLKPGVESVEGAVKTVVGPVYEKYHDVPVEVLKY 85 Query: 424 PHVRKENSIVEL 459 + + S+ EL Sbjct: 86 MDQKVDMSVTEL 97
>TUP1_YEAST (P16649) Glucose repression regulatory protein TUP1 (Flocculation| suppressor protein) (Repressor AER2) Length = 713 Score = 29.6 bits (65), Expect = 8.9 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = -2 Query: 510 KAFYEEEVKRLRLSFEQQFHYAVFFAYMRLREQE 409 K YEEE+K L+L EQ+ H + R+Q+ Sbjct: 70 KDAYEEEIKHLKLGLEQRDHQIASLTVQQQRQQQ 103 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 106,178,301 Number of Sequences: 219361 Number of extensions: 2337356 Number of successful extensions: 6162 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 5893 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6146 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6712189044 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
