ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags1c02 |
|---|---|
| Clone Library Name | barley_pub |
>MAML1_MOUSE (Q6T264) Mastermind-like protein 1 (Mam-1)| Length = 1020 Score = 33.1 bits (74), Expect = 0.68 Identities = 23/74 (31%), Positives = 32/74 (43%) Frame = +1 Query: 400 GRGPRIPPTKQCLNSLPLGCDITNNSLYPSSNTPQPIIPHPYDLLTPACGECVKLLIEFI 579 G G P K+ PLG ++ N L P+S QP P D L A K + Sbjct: 136 GYGDLFPGHKKTRREAPLGVSVSANGLPPASPLGQPDKPSGGDTLQTA----GKHSLGLD 191 Query: 580 WVNGLCMRDLGVHV 621 +N C+ D G+H+ Sbjct: 192 PINKKCLADSGIHL 205
>MUC15_BOVIN (Q8MI01) Mucin-15 precursor (PASIII) (PAS3) (Glycoprotein C)| (Glycoprotein 4) (Component II) Length = 330 Score = 31.6 bits (70), Expect = 2.0 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = +1 Query: 409 PRIPPTKQCLNSLPLGCDITNNSLYPSSNTPQPIIP 516 PR P T ++ LP I +NSL P+S P +P Sbjct: 107 PRSPSTHSFVSKLPWNSSIADNSLLPASAPPNTTVP 142
>NU2M_NEUCR (Q35140) NADH-ubiquinone oxidoreductase chain 2 (EC 1.6.5.3) (NADH| dehydrogenase subunit 2) Length = 583 Score = 30.8 bits (68), Expect = 3.4 Identities = 15/42 (35%), Positives = 24/42 (57%) Frame = -1 Query: 405 TAIFVLFCFIAAIVLYVTPLQVLAALGGFYAMRHPRFRHRLP 280 T +F +F F+ +I+ + L + FY MRHPRF ++ P Sbjct: 64 TQVFQIFIFLISIL--ILQLTSFDPIKKFYIMRHPRFINKWP 103
>IRF4_HUMAN (Q15306) Interferon regulatory factor 4 (IRF-4)| (Lymphocyte-specific interferon regulatory factor) (LSIRF) (NF-EM5) (Multiple myeloma oncogene 1) Length = 451 Score = 30.8 bits (68), Expect = 3.4 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = +1 Query: 427 KQCLNSLPLGCDITNNSLYPSSNTPQPIIPHPYD 528 K+ S P GC I++ Y +SN Q + P+P D Sbjct: 264 KELTTSSPEGCRISHGHTYDASNLDQVLFPYPED 297
>OCLN_CANFA (Q28269) Occludin| Length = 521 Score = 30.4 bits (67), Expect = 4.4 Identities = 15/28 (53%), Positives = 20/28 (71%), Gaps = 4/28 (14%) Frame = -1 Query: 423 WRDPRATAIFVL----FCFIAAIVLYVT 352 + DPRA F+L FCFIAA+V++VT Sbjct: 130 YTDPRAAKGFLLAMVAFCFIAALVIFVT 157
>OCLN_PONPY (Q5RFS5) Occludin| Length = 522 Score = 30.4 bits (67), Expect = 4.4 Identities = 15/28 (53%), Positives = 20/28 (71%), Gaps = 4/28 (14%) Frame = -1 Query: 423 WRDPRATAIFVL----FCFIAAIVLYVT 352 + DPRA F+L FCFIAA+V++VT Sbjct: 131 YTDPRAAKGFMLAMAAFCFIAALVIFVT 158
>OCLN_HUMAN (Q16625) Occludin| Length = 522 Score = 30.4 bits (67), Expect = 4.4 Identities = 15/28 (53%), Positives = 20/28 (71%), Gaps = 4/28 (14%) Frame = -1 Query: 423 WRDPRATAIFVL----FCFIAAIVLYVT 352 + DPRA F+L FCFIAA+V++VT Sbjct: 131 YTDPRAAKGFMLAMAAFCFIAALVIFVT 158
>OPSD_LOLFO (P24603) Rhodopsin| Length = 452 Score = 30.4 bits (67), Expect = 4.4 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 6/60 (10%) Frame = -1 Query: 438 QALLSWRDPRATAIFVLFCFIAAIVLYVTPLQVLAALGG------FYAMRHPRFRHRLPS 277 Q LLSW A+ F I + Y L V+ A Y++ HP+FR R+ S Sbjct: 269 QFLLSWSPYAVVALLAQFGPIEWVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFRERIAS 328
>PSA_HUMAN (P55786) Puromycin-sensitive aminopeptidase (EC 3.4.11.-) (PSA)| Length = 919 Score = 29.6 bits (65), Expect = 7.6 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = -1 Query: 585 HPDELDEEFDTFPTSRSQEIVRMRYD 508 HP E+DE FD S+ ++RM +D Sbjct: 425 HPSEVDEIFDAISYSKGASVIRMLHD 450
>RL22_THEVO (Q97BX2) 50S ribosomal protein L22P| Length = 148 Score = 29.6 bits (65), Expect = 7.6 Identities = 15/54 (27%), Positives = 27/54 (50%) Frame = +1 Query: 358 VEHYRGYETE*HKYGRGPRIPPTKQCLNSLPLGCDITNNSLYPSSNTPQPIIPH 519 + ++R ++ H+ G+GP P K + L ++ NN+ + NT II H Sbjct: 56 IPYFRYLDSVSHRPGKGPGRYPVKAAKVFIDLLSNVENNAEFKGMNTDSLIIKH 109
>PSA_MOUSE (Q11011) Puromycin-sensitive aminopeptidase (EC 3.4.11.-) (PSA)| Length = 920 Score = 29.6 bits (65), Expect = 7.6 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = -1 Query: 585 HPDELDEEFDTFPTSRSQEIVRMRYD 508 HP E+DE FD S+ ++RM +D Sbjct: 426 HPSEVDEIFDAISYSKGASVIRMLHD 451
>DPO4_RHOBA (Q7USY7) DNA polymerase IV (EC 2.7.7.7) (Pol IV)| Length = 396 Score = 29.6 bits (65), Expect = 7.6 Identities = 15/45 (33%), Positives = 25/45 (55%) Frame = -3 Query: 418 GSSGHGHICAILFHSRDSALRHTAPGSRSIRRVLCHEAPKVQAQV 284 GS G G + A + +R+ + PGSR+I+ LC A V+ ++ Sbjct: 31 GSEGRGVVTAASYEAREYGIHSAMPGSRAIK--LCPHADFVRGRL 73
>COX1_CORDI (Q6NFM3) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c| oxidase polypeptide I) (Cytochrome aa3 subunit 1) Length = 564 Score = 29.6 bits (65), Expect = 7.6 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 5/59 (8%) Frame = -1 Query: 477 TVVGDIATQGERVQALLSWRDPRATAIFV-LFC---FIAA-IVLYVTPLQVLAALGGFY 316 T VG IA+ + +L R P T + +FC F+A+ IVL + PL AALG Y Sbjct: 179 TGVGTIASAVNMITTILCMRAPGMTMFRMPIFCWNIFVASVIVLLIFPLLTAAALGVMY 237
>PER44_ARATH (Q93V93) Peroxidase 44 precursor (EC 1.11.1.7) (Atperox P44)| (ATP35) Length = 310 Score = 29.3 bits (64), Expect = 9.9 Identities = 18/50 (36%), Positives = 23/50 (46%) Frame = -1 Query: 405 TAIFVLFCFIAAIVLYVTPLQVLAALGGFYAMRHPRFRHRLPSTPVNFFR 256 TA+F LFCF+A P + GFY+ PR + S N FR Sbjct: 5 TALFFLFCFLA-------PSALAQLRTGFYSRSCPRAESIVASVVANRFR 47
>OCLN_MOUSE (Q61146) Occludin| Length = 521 Score = 29.3 bits (64), Expect = 9.9 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 4/28 (14%) Frame = -1 Query: 423 WRDPRATAIFVL----FCFIAAIVLYVT 352 + DPRA F+L FCFIA++V++VT Sbjct: 129 YTDPRAAKGFLLAMAAFCFIASLVIFVT 156
>OCLN_RAT (Q6P6T5) Occludin| Length = 523 Score = 29.3 bits (64), Expect = 9.9 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 4/28 (14%) Frame = -1 Query: 423 WRDPRATAIFVL----FCFIAAIVLYVT 352 + DPRA F+L FCFIA++V++VT Sbjct: 131 YTDPRAAKGFLLAMAAFCFIASLVIFVT 158 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 90,568,443 Number of Sequences: 219361 Number of extensions: 1943496 Number of successful extensions: 5250 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 5017 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5247 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5710231900 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
