ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags1b22 |
|---|---|
| Clone Library Name | barley_pub |
>DHX8_ARATH (Q38953) Probable pre-mRNA-splicing factor ATP-dependent RNA helicase| (EC 3.6.1.-) Length = 1168 Score = 107 bits (266), Expect = 1e-23 Identities = 48/54 (88%), Positives = 51/54 (94%) Frame = -2 Query: 206 VTVVDPKWLVEXXPRFYKGADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA 45 VTV+DPKWLVE PRF+K +DPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA Sbjct: 1115 VTVIDPKWLVELAPRFFKVSDPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA 1168
>DHX8_HUMAN (Q14562) ATP-dependent RNA helicase DHX8 (EC 3.6.1.-) (DEAH box| protein 8) (RNA helicase HRH1) Length = 1220 Score = 82.8 bits (203), Expect = 2e-16 Identities = 32/51 (62%), Positives = 45/51 (88%) Frame = -2 Query: 206 VTVVDPKWLVEXXPRFYKGADPTKMSKRKRQERIEPLYDRYHEPNSWRLSK 54 VT +DP+WLVE P F+K +DPTK+SK+K+Q+R+EPLY+RY EPN+WR+S+ Sbjct: 1165 VTTIDPRWLVEFAPAFFKVSDPTKLSKQKKQQRLEPLYNRYEEPNAWRISR 1215
>MOG5_CAEEL (Q09530) Probable pre-mRNA-splicing factor ATP-dependent RNA helicase| mog-5 (EC 3.6.1.-) (Sex determination protein mog-5) (Masculinization of germ line protein 5) Length = 1200 Score = 67.0 bits (162), Expect = 1e-11 Identities = 26/51 (50%), Positives = 39/51 (76%) Frame = -2 Query: 206 VTVVDPKWLVEXXPRFYKGADPTKMSKRKRQERIEPLYDRYHEPNSWRLSK 54 VT +DPKWLVE P F+K D TK+S KR ++I+PL+D+Y + N+WR+++ Sbjct: 1140 VTAIDPKWLVEFAPSFFKIGDSTKLSTFKRNQKIDPLFDKYADANAWRITR 1190
>DHX8_SCHPO (O42643) Putative pre-mRNA-splicing factor ATP-dependent RNA helicase| C10F6.02c (EC 3.6.1.-) Length = 1168 Score = 62.8 bits (151), Expect = 2e-10 Identities = 25/53 (47%), Positives = 40/53 (75%) Frame = -2 Query: 206 VTVVDPKWLVEXXPRFYKGADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKRR 48 V+ V+PKWLVE P F+K A+ ++SK K+ ++ PLY+R+ +P+ WR+SK+R Sbjct: 1112 VSTVNPKWLVEVAPTFFKFANANQVSKTKKNLKVLPLYNRFEKPDEWRISKQR 1164
>PRP22_YEAST (P24384) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22| (EC 3.6.1.-) Length = 1145 Score = 48.5 bits (114), Expect = 5e-06 Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%) Frame = -2 Query: 206 VTVVDPKWLVEXXPRFYKGADPTKMSKRKRQERIEPLYDRY-HEPNSWRLSKRR 48 VT ++P+WL+E P FYK D S++K +I PL++++ + NSWRLS R Sbjct: 1083 VTSIEPQWLLEVAPHFYKAGDAESQSRKK--AKIIPLHNKFAKDQNSWRLSSIR 1134
>PRP43_YEAST (P53131) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43| (EC 3.6.1.-) (Helicase JA1) Length = 767 Score = 32.3 bits (72), Expect = 0.35 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = -2 Query: 206 VTVVDPKWLVEXXPRFYKGADPTKMSKRKRQERIEPLYDRYHEPNSWRLSKR 51 VT V P+WL+E P +Y ++ K + ERI+ DR +E + K+ Sbjct: 710 VTSVRPEWLIEIAPAYYDLSNFQKGDVKLSLERIKEKVDRLNELKQGKNKKK 761
>Y7973_BRAJA (Q89C25) UPF0313 protein blr7973| Length = 673 Score = 30.4 bits (67), Expect = 1.3 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = -2 Query: 152 GADPTKMSKRKRQERIEPLYDRYHEPNSW 66 G+D + K RQ R+ + RYH+P++W Sbjct: 585 GSDKVEAIKGLRQRRLHKAFLRYHDPDNW 613
>DHX35_CAEEL (Q9BKQ8) Probable ATP-dependent RNA helicase DHX35 homolog (EC| 3.6.1.-) Length = 732 Score = 30.0 bits (66), Expect = 1.7 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%) Frame = -2 Query: 206 VTVVDPKWLVEXXPRFYK-GADPTKMSKRKR 117 VTV++P+WL E P +Y+ G + KR R Sbjct: 689 VTVIEPEWLYELAPHYYEFGTEGELAEKRMR 719
>Y1980_VIBPA (Q87N95) UPF0313 protein VP1980| Length = 777 Score = 29.6 bits (65), Expect = 2.3 Identities = 12/33 (36%), Positives = 19/33 (57%) Frame = -2 Query: 158 YKGADPTKMSKRKRQERIEPLYDRYHEPNSWRL 60 YK + ++K +RQ R+ RYH+P +W L Sbjct: 614 YKQREDIPVAKGERQRRLHKALLRYHDPANWPL 646
>Y679_RHOPA (P61405) UPF0313 protein RPA0679| Length = 677 Score = 29.6 bits (65), Expect = 2.3 Identities = 10/28 (35%), Positives = 18/28 (64%) Frame = -2 Query: 149 ADPTKMSKRKRQERIEPLYDRYHEPNSW 66 ++P + K RQ R+ + RYH+P++W Sbjct: 589 SEPVEAIKGLRQRRLHKAFLRYHDPDNW 616
>ROR1_MOUSE (Q9Z139) Tyrosine-protein kinase transmembrane receptor ROR1| precursor (EC 2.7.10.1) (Neurotrophic tyrosine kinase, receptor-related 1) (mROR1) Length = 937 Score = 29.6 bits (65), Expect = 2.3 Identities = 13/34 (38%), Positives = 21/34 (61%) Frame = -3 Query: 130 ARGSDRKESSLCTTGTMSPTHGVSASAELDGPSY 29 ARG+D +E+ L + + PT + S+E+D SY Sbjct: 24 ARGADAQETELSVSAELVPTSSWNTSSEIDKGSY 57
>Y2212_VIBVU (Q8DAI5) UPF0313 protein VV1_2212| Length = 768 Score = 29.3 bits (64), Expect = 2.9 Identities = 12/33 (36%), Positives = 18/33 (54%) Frame = -2 Query: 158 YKGADPTKMSKRKRQERIEPLYDRYHEPNSWRL 60 YK + ++K RQ R+ RYH+P +W L Sbjct: 614 YKQREDVPVAKGDRQRRLHKALLRYHDPANWPL 646
>Y2143_VIBVY (Q7MJL8) UPF0313 protein VV2143| Length = 768 Score = 29.3 bits (64), Expect = 2.9 Identities = 12/33 (36%), Positives = 18/33 (54%) Frame = -2 Query: 158 YKGADPTKMSKRKRQERIEPLYDRYHEPNSWRL 60 YK + ++K RQ R+ RYH+P +W L Sbjct: 614 YKQREDVPVAKGDRQRRLHKALLRYHDPANWPL 646
>GA2L2_HUMAN (Q8NHY3) GAS2-like protein 2 (Growth arrest-specific 2-like 2)| (GAS2-related protein on chromosome 17) (GAR17 protein) Length = 880 Score = 28.9 bits (63), Expect = 3.8 Identities = 14/30 (46%), Positives = 15/30 (50%) Frame = -2 Query: 155 KGADPTKMSKRKRQERIEPLYDRYHEPNSW 66 KG DP S KR+ER P R P SW Sbjct: 391 KGRDPQCTSSGKREERYPPELPRGRIPTSW 420
>PRP16_HUMAN (Q92620) Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16| (EC 3.6.1.-) (ATP-dependent RNA helicase DHX38) (DEAH box protein 38) Length = 1227 Score = 28.5 bits (62), Expect = 5.0 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%) Frame = -2 Query: 206 VTVVDPKWLVEXXPRFY--KGADPTKMSKRKR 117 VT VD +WL E P FY K A ++ R+R Sbjct: 1133 VTAVDGEWLAELGPMFYSVKQAGKSRQENRRR 1164
>SIR_MYCTU (P71753) Sulfite reductase [ferredoxin] (EC 1.8.7.1)| Length = 555 Score = 27.7 bits (60), Expect = 8.6 Identities = 16/43 (37%), Positives = 19/43 (44%) Frame = -2 Query: 200 VVDPKWLVEXXPRFYKGADPTKMSKRKRQERIEPLYDRYHEPN 72 V+DP W +E R Y G RK + I L D HE N Sbjct: 181 VLDPTWAIEEIVRRYIGKPDFADLPRKYKTAISGLQDVAHEIN 223
>SIR_MYCBO (Q7TYP6) Sulfite reductase [ferredoxin] (EC 1.8.7.1)| Length = 555 Score = 27.7 bits (60), Expect = 8.6 Identities = 16/43 (37%), Positives = 19/43 (44%) Frame = -2 Query: 200 VVDPKWLVEXXPRFYKGADPTKMSKRKRQERIEPLYDRYHEPN 72 V+DP W +E R Y G RK + I L D HE N Sbjct: 181 VLDPTWAIEEIVRRYIGKPDFADLPRKYKTAISGLQDVAHEIN 223
>MOG1_CAEEL (P34498) Probable pre-mRNA-splicing factor ATP-dependent RNA helicase| mog-1 (EC 3.6.1.-) (Sex determination protein mog-1) (Masculinization of germ line protein 1) Length = 1131 Score = 27.7 bits (60), Expect = 8.6 Identities = 15/32 (46%), Positives = 17/32 (53%) Frame = -2 Query: 206 VTVVDPKWLVEXXPRFYKGADPTKMSKRKRQE 111 VT VD WL E P FY K SK+ R+E Sbjct: 1043 VTAVDAIWLAELGPMFYS----IKESKQSRKE 1070 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,697,743 Number of Sequences: 219361 Number of extensions: 502711 Number of successful extensions: 1465 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 1459 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1465 length of database: 80,573,946 effective HSP length: 44 effective length of database: 70,922,062 effective search space used: 1702129488 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
