ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags1b22 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 155 bits (78), Expect = 6e-35 Identities = 114/126 (90%) Strand = Plus / Minus Query: 39 ccatcaagctcggcgcttgctgagacgccatgagttgggctcatggtacctgtcgtacag 98 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 11672422 ccatcaagctcggcgcttgctgagacgccaggagttgggctcatggtacctgtcgtacag 11672363 Query: 99 aggctcgattctttcctgtcgcttcctcttgctcatcttggttggatctgcgcccttgta 158 || || || || ||||| | |||||||||||||||||||||||| ||||| |||||| Sbjct: 11672362 gggttcaatcctctcctgcctcttcctcttgctcatcttggttgggtctgctgacttgta 11672303 Query: 159 gaatct 164 |||||| Sbjct: 11672302 gaatct 11672297
>dbj|AP005532.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0010K08 Length = 184760 Score = 155 bits (78), Expect = 6e-35 Identities = 114/126 (90%) Strand = Plus / Minus Query: 39 ccatcaagctcggcgcttgctgagacgccatgagttgggctcatggtacctgtcgtacag 98 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 118711 ccatcaagctcggcgcttgctgagacgccaggagttgggctcatggtacctgtcgtacag 118652 Query: 99 aggctcgattctttcctgtcgcttcctcttgctcatcttggttggatctgcgcccttgta 158 || || || || ||||| | |||||||||||||||||||||||| ||||| |||||| Sbjct: 118651 gggttcaatcctctcctgcctcttcctcttgctcatcttggttgggtctgctgacttgta 118592 Query: 159 gaatct 164 |||||| Sbjct: 118591 gaatct 118586
>dbj|AK059339.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-026-B03, full insert sequence Length = 1897 Score = 155 bits (78), Expect = 6e-35 Identities = 114/126 (90%) Strand = Plus / Minus Query: 39 ccatcaagctcggcgcttgctgagacgccatgagttgggctcatggtacctgtcgtacag 98 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct: 1643 ccatcaagctcggcgcttgctgagacgccaggagttgggctcatggtacctgtcgtacag 1584 Query: 99 aggctcgattctttcctgtcgcttcctcttgctcatcttggttggatctgcgcccttgta 158 || || || || ||||| | |||||||||||||||||||||||| ||||| |||||| Sbjct: 1583 gggttcaatcctctcctgcctcttcctcttgctcatcttggttgggtctgctgacttgta 1524 Query: 159 gaatct 164 |||||| Sbjct: 1523 gaatct 1518
>ref|XM_465115.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3723 Score = 149 bits (75), Expect = 4e-33 Identities = 111/123 (90%) Strand = Plus / Minus Query: 42 tcaagctcggcgcttgctgagacgccatgagttgggctcatggtacctgtcgtacagagg 101 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || Sbjct: 3723 tcaagctcggcgcttgctgagacgccaggagttgggctcatggtacctgtcgtacagggg 3664 Query: 102 ctcgattctttcctgtcgcttcctcttgctcatcttggttggatctgcgcccttgtagaa 161 || || || ||||| | |||||||||||||||||||||||| ||||| ||||||||| Sbjct: 3663 ttcaatcctctcctgcctcttcctcttgctcatcttggttgggtctgctgacttgtagaa 3604 Query: 162 tct 164 ||| Sbjct: 3603 tct 3601
>gb|AY106610.1| Zea mays PCO071903 mRNA sequence Length = 585 Score = 101 bits (51), Expect = 8e-19 Identities = 108/127 (85%) Strand = Plus / Minus Query: 41 atcaagctcggcgcttgctgagacgccatgagttgggctcatggtacctgtcgtacagag 100 ||||||||||||||||||| |||||||| ||||||||||| ||||| || || || |||| Sbjct: 494 atcaagctcggcgcttgctaagacgccaagagttgggctcgtggtatctatcatatagag 435 Query: 101 gctcgattctttcctgtcgcttcctcttgctcatcttggttggatctgcgcccttgtaga 160 ||||||| || ||||| | ||||| |||||||||||||| || || || |||||||| | Sbjct: 434 gctcgatcctctcctgccttttccttttgctcatcttggtggggtcagcacccttgtaaa 375 Query: 161 atcttgg 167 | ||||| Sbjct: 374 accttgg 368
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 85.7 bits (43), Expect = 5e-14 Identities = 88/103 (85%) Strand = Plus / Plus Query: 47 ctcggcgcttgctgagacgccatgagttgggctcatggtacctgtcgtacagaggctcga 106 |||||||||||||||| ||||||||||| ||||| | ||| ||||| ||||||||||| | Sbjct: 13566626 ctcggcgcttgctgaggcgccatgagtttggctcgttgtatctgtcatacagaggctcaa 13566685 Query: 107 ttctttcctgtcgcttcctcttgctcatcttggttggatctgc 149 | ||||| || ||||||| ||| || ||||| ||||| ||||| Sbjct: 13566686 tcctttcttggcgcttccgcttactgatcttcgttgggtctgc 13566728
>dbj|AP003572.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0459H02 Length = 168230 Score = 85.7 bits (43), Expect = 5e-14 Identities = 88/103 (85%) Strand = Plus / Plus Query: 47 ctcggcgcttgctgagacgccatgagttgggctcatggtacctgtcgtacagaggctcga 106 |||||||||||||||| ||||||||||| ||||| | ||| ||||| ||||||||||| | Sbjct: 95116 ctcggcgcttgctgaggcgccatgagtttggctcgttgtatctgtcatacagaggctcaa 95175 Query: 107 ttctttcctgtcgcttcctcttgctcatcttggttggatctgc 149 | ||||| || ||||||| ||| || ||||| ||||| ||||| Sbjct: 95176 tcctttcttggcgcttccgcttactgatcttcgttgggtctgc 95218
>dbj|AK100422.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088B11, full insert sequence Length = 3516 Score = 85.7 bits (43), Expect = 5e-14 Identities = 88/103 (85%) Strand = Plus / Minus Query: 47 ctcggcgcttgctgagacgccatgagttgggctcatggtacctgtcgtacagaggctcga 106 |||||||||||||||| ||||||||||| ||||| | ||| ||||| ||||||||||| | Sbjct: 3282 ctcggcgcttgctgaggcgccatgagtttggctcgttgtatctgtcatacagaggctcaa 3223 Query: 107 ttctttcctgtcgcttcctcttgctcatcttggttggatctgc 149 | ||||| || ||||||| ||| || ||||| ||||| ||||| Sbjct: 3222 tcctttcttggcgcttccgcttactgatcttcgttgggtctgc 3180
>dbj|AK058622.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-B10, full insert sequence Length = 1026 Score = 85.7 bits (43), Expect = 5e-14 Identities = 88/103 (85%) Strand = Plus / Minus Query: 47 ctcggcgcttgctgagacgccatgagttgggctcatggtacctgtcgtacagaggctcga 106 |||||||||||||||| ||||||||||| ||||| | ||| ||||| ||||||||||| | Sbjct: 893 ctcggcgcttgctgaggcgccatgagtttggctcgttgtatctgtcatacagaggctcaa 834 Query: 107 ttctttcctgtcgcttcctcttgctcatcttggttggatctgc 149 | ||||| || ||||||| ||| || ||||| ||||| ||||| Sbjct: 833 tcctttcttggcgcttccgcttactgatcttcgttgggtctgc 791
>ref|NM_113564.2| Arabidopsis thaliana ATP binding / ATP-dependent RNA helicase/ ATP-dependent helicase/ RNA binding / helicase/ nucleic acid binding AT3G26560 mRNA, complete cds Length = 3753 Score = 50.1 bits (25), Expect = 0.003 Identities = 73/89 (82%) Strand = Plus / Minus Query: 55 ttgctgagacgccatgagttgggctcatggtacctgtcgtacagaggctcgattctttcc 114 |||||||||||||||||||| ||||| ||||| | ||| |||| ||||| || | ||| Sbjct: 3547 ttgctgagacgccatgagttaggctcgtggtaacggtcatacaacggctcaatccgttct 3488 Query: 115 tgtcgcttcctcttgctcatcttggttgg 143 || ||||| | ||||||||| || ||||| Sbjct: 3487 tggcgcttacgcttgctcatttttgttgg 3459
>emb|X98130.1|AT81KBGEN Arabidopsis thaliana 81kb genomic sequence Length = 81493 Score = 50.1 bits (25), Expect = 0.003 Identities = 73/89 (82%) Strand = Plus / Plus Query: 55 ttgctgagacgccatgagttgggctcatggtacctgtcgtacagaggctcgattctttcc 114 |||||||||||||||||||| ||||| ||||| | ||| |||| ||||| || | ||| Sbjct: 2259 ttgctgagacgccatgagttaggctcgtggtaacggtcatacaacggctcaatccgttct 2318 Query: 115 tgtcgcttcctcttgctcatcttggttgg 143 || ||||| | ||||||||| || ||||| Sbjct: 2319 tggcgcttacgcttgctcatttttgttgg 2347
>emb|X97970.1|ATRNAHELI A.thaliana mRNA for RNA helicase Length = 3734 Score = 50.1 bits (25), Expect = 0.003 Identities = 73/89 (82%) Strand = Plus / Minus Query: 55 ttgctgagacgccatgagttgggctcatggtacctgtcgtacagaggctcgattctttcc 114 |||||||||||||||||||| ||||| ||||| | ||| |||| ||||| || | ||| Sbjct: 3548 ttgctgagacgccatgagttaggctcgtggtaacggtcatacaacggctcaatccgttct 3489 Query: 115 tgtcgcttcctcttgctcatcttggttgg 143 || ||||| | ||||||||| || ||||| Sbjct: 3488 tggcgcttacgcttgctcatttttgttgg 3460
>dbj|AK222021.1| Arabidopsis thaliana mRNA for ATP-dependent RNA helicase, complete cds, clone: RAFL22-70-B08 Length = 1030 Score = 50.1 bits (25), Expect = 0.003 Identities = 73/89 (82%) Strand = Plus / Minus Query: 55 ttgctgagacgccatgagttgggctcatggtacctgtcgtacagaggctcgattctttcc 114 |||||||||||||||||||| ||||| ||||| | ||| |||| ||||| || | ||| Sbjct: 834 ttgctgagacgccatgagttaggctcgtggtaacggtcatacaacggctcaatccgttct 775 Query: 115 tgtcgcttcctcttgctcatcttggttgg 143 || ||||| | ||||||||| || ||||| Sbjct: 774 tggcgcttacgcttgctcatttttgttgg 746
>dbj|AB028611.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MFE16 Length = 82646 Score = 50.1 bits (25), Expect = 0.003 Identities = 73/89 (82%) Strand = Plus / Plus Query: 55 ttgctgagacgccatgagttgggctcatggtacctgtcgtacagaggctcgattctttcc 114 |||||||||||||||||||| ||||| ||||| | ||| |||| ||||| || | ||| Sbjct: 42729 ttgctgagacgccatgagttaggctcgtggtaacggtcatacaacggctcaatccgttct 42788 Query: 115 tgtcgcttcctcttgctcatcttggttgg 143 || ||||| | ||||||||| || ||||| Sbjct: 42789 tggcgcttacgcttgctcatttttgttgg 42817
>gb|AF467900.1| Prunus persica clone pPn31C7 hypothetical proteins, and hypothetical transcription factor genes, complete cds Length = 48843 Score = 44.1 bits (22), Expect = 0.17 Identities = 79/98 (80%) Strand = Plus / Minus Query: 52 cgcttgctgagacgccatgagttgggctcatggtacctgtcgtacagaggctcgattctt 111 ||||| || |||||||| ||||| || ||||||||||| || || || || || || | | Sbjct: 16706 cgcttactaagacgccaagagttaggttcatggtacctatcatatagcggttcaatacgt 16647 Query: 112 tcctgtcgcttcctcttgctcatcttggttggatctgc 149 || || ||||| ||||||||||||||| |||||||| Sbjct: 16646 tcttgacgcttgtgcttgctcatcttggtgggatctgc 16609
>emb|AL935212.11| Human DNA sequence from clone RP11-160N1 on chromosome 9 Contains eight novel pseudogenes, two novel genes and three CpG islands, complete sequence Length = 181647 Score = 42.1 bits (21), Expect = 0.66 Identities = 21/21 (100%) Strand = Plus / Plus Query: 13 aaaaacttgtggctgggtatg 33 ||||||||||||||||||||| Sbjct: 135520 aaaaacttgtggctgggtatg 135540
>gb|AC084494.1|CBRG10B04 Caenorhabditis briggsae cosmid G10B04, complete sequence Length = 8263 Score = 42.1 bits (21), Expect = 0.66 Identities = 21/21 (100%) Strand = Plus / Plus Query: 22 tggctgggtatgatggaccat 42 ||||||||||||||||||||| Sbjct: 4237 tggctgggtatgatggaccat 4257
>gb|AF488414.1| Pennisetum glaucum BAC 311G2 complete sequence Length = 123096 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 106 attctttcctgtcgcttcctcttg 129 |||||||||| ||||||||||||| Sbjct: 1269 attctttcctctcgcttcctcttg 1246
>emb|AL445885.1|CNS07EES Human chromosome 14 DNA sequence BAC C-2506J14 of library CalTech-D from chromosome 14 of Homo sapiens (Human), complete sequence Length = 170892 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 11 gcaaaaacttgtggctgggtatga 34 ||||||||||||||||||| |||| Sbjct: 170037 gcaaaaacttgtggctgggaatga 170014
>emb|AL352976.3|CNS05TBV Human chromosome 14 DNA sequence BAC R-487K10 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 180460 Score = 40.1 bits (20), Expect = 2.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 11 gcaaaaacttgtggctgggtatga 34 ||||||||||||||||||| |||| Sbjct: 80088 gcaaaaacttgtggctgggaatga 80065 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,100,240 Number of Sequences: 3902068 Number of extensions: 1100240 Number of successful extensions: 64090 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64023 Number of HSP's gapped (non-prelim): 67 length of query: 207 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 185 effective length of database: 17,147,199,772 effective search space: 3172231957820 effective search space used: 3172231957820 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
