ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags1b19 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M95818.1|WHTIF4F28A Wheat (clone p28-1) initiation factor isozyme 4F p82 subunit mRNA, complete cds Length = 1079 Score = 139 bits (70), Expect = 2e-30 Identities = 106/118 (89%), Gaps = 5/118 (4%) Strand = Plus / Minus Query: 22 agcaaaacgacataatagattggaaaattgcctcaaacaacagtatcagagg-----cga 76 |||||||||||||| ||||||||||||||||||||||||||| || | |||| ||| Sbjct: 815 agcaaaacgacatagtagattggaaaattgcctcaaacaacattagctgaggcggttcga 756 Query: 77 atctcggtgaaacactacacggacacttttccgagctgcggtcttcatcatgtgtgca 134 |||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||| Sbjct: 755 atctcggtaaaacactacacggccacttttccaagctgcggtcttcatcatgtgtgca 698
>emb|AJ704455.1| Hordeum vulgare partial eIF(iso)4E gene for putative eukaryotic translation initiation factor (iso)4E, exons 3-5, line OWB-D Length = 1412 Score = 121 bits (61), Expect = 5e-25 Identities = 61/61 (100%) Strand = Plus / Minus Query: 74 cgaatctcggtgaaacactacacggacacttttccgagctgcggtcttcatcatgtgtgc 133 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1412 cgaatctcggtgaaacactacacggacacttttccgagctgcggtcttcatcatgtgtgc 1353 Query: 134 a 134 | Sbjct: 1352 a 1352
>gb|BT009308.1| Triticum aestivum clone wlm1.pk0019.c10:fis, full insert mRNA sequence Length = 1162 Score = 93.7 bits (47), Expect = 1e-16 Identities = 104/121 (85%), Gaps = 9/121 (7%) Strand = Plus / Minus Query: 22 agcaaaacgac---ataatagattggaaaattgcctcaaacaacagtatcagagg----- 73 ||||||||||| ||||||||||||||||||||||||||||||| || | |||| Sbjct: 814 agcaaaacgacataataatagattggaaaattgcctcaaacaacattagctgaggcggtt 755 Query: 74 cgaatctcggtgaaacactacacggacacttttccgagctgcggtcttcatcatgtgtgc 133 ||||||||||| |||||||||| || ||| |||| |||||||||||||||||||| |||| Sbjct: 754 cgaatctcggtcaaacactacaaggccac-tttctgagctgcggtcttcatcatgcgtgc 696 Query: 134 a 134 | Sbjct: 695 a 695 Score = 38.2 bits (19), Expect = 6.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 2 caacatctctgtatgccacaagc 24 |||||||||||||| |||||||| Sbjct: 845 caacatctctgtataccacaagc 823
>gb|M95819.1|WHTIF4F28B Wheat (clone p28-62) initiation factor isozyme 4F p28 subunit mRNA, complete cds Length = 1054 Score = 93.7 bits (47), Expect = 1e-16 Identities = 104/121 (85%), Gaps = 9/121 (7%) Strand = Plus / Minus Query: 22 agcaaaacgac---ataatagattggaaaattgcctcaaacaacagtatcagagg----- 73 ||||||||||| ||||||||||||||||||||||||||||||| || | |||| Sbjct: 817 agcaaaacgacataataatagattggaaaattgcctcaaacaacattagctgaggcggtt 758 Query: 74 cgaatctcggtgaaacactacacggacacttttccgagctgcggtcttcatcatgtgtgc 133 ||||||||||| |||||||||| || ||| |||| |||||||||||||||||||| |||| Sbjct: 757 cgaatctcggtcaaacactacaaggccac-tttctgagctgcggtcttcatcatgcgtgc 699 Query: 134 a 134 | Sbjct: 698 a 698 Score = 38.2 bits (19), Expect = 6.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 2 caacatctctgtatgccacaagc 24 |||||||||||||| |||||||| Sbjct: 848 caacatctctgtataccacaagc 826
>emb|CR589874.12| Zebrafish DNA sequence from clone DKEY-259N11 in linkage group 13, complete sequence Length = 145629 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 aaaattgcctcaaacaacag 64 |||||||||||||||||||| Sbjct: 47839 aaaattgcctcaaacaacag 47820
>emb|CR788242.3| Zebrafish DNA sequence from clone DKEY-239H16 in linkage group 13, complete sequence Length = 143940 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 aaaattgcctcaaacaacag 64 |||||||||||||||||||| Sbjct: 42345 aaaattgcctcaaacaacag 42364
>gb|AF037220.1|AF037220 Mesembryanthemum crystallinum inositol monophosphatase (IMP1) mRNA, complete cds Length = 1229 Score = 40.1 bits (20), Expect = 1.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 aattgcctcaaacaacagta 66 |||||||||||||||||||| Sbjct: 238 aattgcctcaaacaacagta 257
>gb|AF016679.1| Caenorhabditis elegans cosmid T28C12, complete sequence Length = 32056 Score = 38.2 bits (19), Expect = 6.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 42 tggaaaattgcctcaaaca 60 ||||||||||||||||||| Sbjct: 2694 tggaaaattgcctcaaaca 2712
>dbj|AP001978.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-258O13, complete sequence Length = 161602 Score = 38.2 bits (19), Expect = 6.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 52 cctcaaacaacagtatcagaggc 74 |||||||||||||| |||||||| Sbjct: 87663 cctcaaacaacagtttcagaggc 87641 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 934,914 Number of Sequences: 3902068 Number of extensions: 934914 Number of successful extensions: 57969 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57950 Number of HSP's gapped (non-prelim): 15 length of query: 134 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 113 effective length of database: 17,151,101,840 effective search space: 1938074507920 effective search space used: 1938074507920 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
