>ARFG_ARATH (P93022) Auxin response factor 7 (Non-phototropic hypocotyl 4)|
           (Protein BIPOSTO) (Auxin-responsive protein
           IAA21/IAA23/IAA25)
          Length = 1164

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 322 QNLPDQRQHQALSPRAQHP-RQRQCPQIQHLNQLVKRRHQVHPSC 453
           Q L  Q+Q Q LSP++Q P  Q Q  Q+Q L  L  + HQ   SC
Sbjct: 755 QRLQQQQQQQFLSPQSQLPHHQLQSQQLQQLPTL-SQGHQFPSSC 798

>CWC25_USTMA (Q4P6I3) Pre-mRNA-splicing factor CWC25|
          Length = 520

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -3

Query: 577 GSXHXKVMYHPFTKXEQXXAXESEKKAIEXRKRLKE 470
           G  + K  +HP  +  Q    + EK+A+E RK+L+E
Sbjct: 96  GDLNTKKSWHPLLQVNQERVWKREKEALEERKKLEE 131

>TCF20_MOUSE (Q9EPQ8) Transcription factor 20 (Stromelysin 1 PDGF-responsive|
           element-binding protein) (SPRE-binding protein) (Nuclear
           factor SPBP)
          Length = 1983

 Score = 30.4 bits (67), Expect = 4.5
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 316 QYQNLPDQRQHQALSPRAQHPRQRQCPQIQHLNQLVKRRHQVHP 447
           QYQ     +Q Q    + Q  +Q+Q  Q+Q L Q + + HQ  P
Sbjct: 165 QYQQQASSQQQQQQQQQQQQQQQQQQQQVQQLRQQLYQSHQPLP 208

>DHH1_CANAL (Q5AAW3) ATP-dependent RNA helicase DHH1 (EC 3.6.1.-)|
          Length = 549

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 298 GRCPRRQYQNLPDQRQHQALSPRAQHP-RQRQCPQIQH 408
           G   ++Q Q  P Q+Q Q+ SP  Q P +Q+Q P  QH
Sbjct: 444 GSSSQQQQQPPPQQQQQQSTSPPQQQPQQQQQQPNPQH 481

>STB4_YEAST (P50104) Probable transcriptional regulatory protein STB4|
          Length = 949

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 3   LCXLLSFTVICRVTVHIXIQ*SNQQIVYMSCTAVYSTLEC 122
           L  L +  +IC + +H  I  +  + +  SC  ++ TLEC
Sbjct: 752 LSQLFTVNLICIIYLHAGIAVTQNKAIMQSCQEIWRTLEC 791

>MAML3_HUMAN (Q96JK9) Mastermind-like protein 3 (Mam-3)|
          Length = 1133

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = +1

Query: 262 SQSSP*TSQLYQGRCPRRQYQNLPDQRQHQALSPRAQHPRQRQCPQIQHLNQ 417
           S  SP   QL Q    ++Q   L  Q+Q Q    + Q  +Q+Q  Q QH NQ
Sbjct: 460 SDMSP-AEQLKQMAAQQQQRAKLMQQKQQQQQQQQQQQQQQQQQQQQQHSNQ 510

>MUC13_MOUSE (P19467) Mucin-13 precursor (Cell surface antigen 114/A10)|
           (Lymphocyte antigen 64)
          Length = 573

 Score = 29.3 bits (64), Expect = 10.0
 Identities = 20/78 (25%), Positives = 39/78 (50%)
 Frame = +2

Query: 176 LYIKLCRRLVRLGNSGAATTLTRYAQVPCHSPPHELPSFTKAAAHGANTRTYQTSASTKP 355
           L + L   LV +G+S  A++ T  +     SPP  + S +  ++  A+T T  +  ++ P
Sbjct: 5   LLLSLSLLLVTVGSSSQASSTTSSSGGT--SPPTTVQSQSPGSSSQASTTTSSSGGASPP 62

Query: 356 *AHEPNTPGNASAHKSNT 409
              +  +PG++S   + T
Sbjct: 63  TTVQSQSPGSSSQASTTT 80


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,173,440
Number of Sequences: 219361
Number of extensions: 1272316
Number of successful extensions: 4087
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4068
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5767334219
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)