ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags1b04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK071334.1| Oryza sativa (japonica cultivar-group) cDNA clon... 184 2e-43
2dbj|AK060581.1| Oryza sativa (japonica cultivar-group) cDNA clon... 184 2e-43
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 159 9e-36
4dbj|AP005524.3| Oryza sativa (japonica cultivar-group) genomic D... 159 9e-36
5gb|AF272752.1|AF272752 Zea mays kinesin heavy chain (KIN4) mRNA,... 109 8e-21
6gb|BT018857.1| Zea mays clone EL01N0556F08.d mRNA sequence 94 5e-16
7gb|AF272755.1|AF272755 Zea mays kinesin heavy chain (KIN8) mRNA,... 94 5e-16
8gb|AC173289.2| Medicago truncatula chromosome 2 BAC clone mth2-3... 50 0.006
9emb|BX571865.1| Photorhabdus luminescens subsp. laumondii TTO1 c... 42 1.5
10ref|XM_383550.1| Gibberella zeae PH-1 chromosome 2 hypothetical ... 40 5.9
11gb|AC008163.2| Homo sapiens BAC clone RP11-5B9 from 7, complete ... 40 5.9
12gb|AC122269.4| Mus musculus chromosome 7 clone RP23-220G20, comp... 40 5.9
13emb|AL672291.2| Human DNA sequence from clone XX-178 on chromoso... 40 5.9
14emb|CR387936.8| Zebrafish DNA sequence from clone CH211-85P6 in ... 40 5.9
15emb|Z19150.1|RNABSRECB R.norvegicus androgen receptor DNA-bindin... 40 5.9
16gb|AF229541.1|AF229541 Homo sapiens clone 1qtel949_c126t3_c17t7 ... 40 5.9
17gb|AC009487.3| Homo sapiens BAC clone RP11-334E15 from 2, comple... 40 5.9
18gb|AC151839.2| Mus musculus BAC clone RP23-191M5 from 7, complet... 40 5.9
19emb|AM050329.1| Unidentified microorganism phagemid clone pBKR.34 40 5.9
20emb|AL627445.21| Mouse DNA sequence from clone RP23-81D2 on chro... 40 5.9 
>dbj|AK071334.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023090L01, full
            insert sequence
          Length = 3709

 Score =  184 bits (93), Expect = 2e-43
 Identities = 183/214 (85%)
 Strand = Plus / Minus

                                                                        
Query: 160  ggcgagcgagggatgagcgacggcttgggttccttgctcgattcatagggatggttctca 219
            |||||||||||||||||||| ||| || | ||||||||||  || ||||| |||||||| 
Sbjct: 3398 ggcgagcgagggatgagcgatggcctgcggtccttgctcggctcgtaggggtggttctcg 3339

                                                                        
Query: 220  cggaactcatccatcagggactcgattggcatcgctcgcaacgactcgatcgtgcctttg 279
            |||||||| |||||||||||||| || ||||||||||||| ||||||||||| | |||||
Sbjct: 3338 cggaactcgtccatcagggactccatcggcatcgctcgcagcgactcgatcgcgtctttg 3279

                                                                        
Query: 280  ctcgggacttccggctcacacctnaccggagtttcaccantcggctcatagtccctgtag 339
            ||||| || ||||||||  |||| ||||||||||| ||  ||||||| |||||| |||||
Sbjct: 3278 ctcggcacctccggctccgacctcaccggagtttcgccggtcggctcgtagtccttgtag 3219

                                              
Query: 340  ctgctttggaaagccttctcggnatgtgtgttga 373
            ||||| |||||||| || ||||  || |||||||
Sbjct: 3218 ctgctctggaaagcgttgtcggcgtgggtgttga 3185
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>dbj|AK060581.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-H01, full
            insert sequence
          Length = 1784

 Score =  184 bits (93), Expect = 2e-43
 Identities = 183/214 (85%)
 Strand = Plus / Minus

                                                                        
Query: 160  ggcgagcgagggatgagcgacggcttgggttccttgctcgattcatagggatggttctca 219
            |||||||||||||||||||| ||| || | ||||||||||  || ||||| |||||||| 
Sbjct: 1478 ggcgagcgagggatgagcgatggcctgcggtccttgctcggctcgtaggggtggttctcg 1419

                                                                        
Query: 220  cggaactcatccatcagggactcgattggcatcgctcgcaacgactcgatcgtgcctttg 279
            |||||||| |||||||||||||| || ||||||||||||| ||||||||||| | |||||
Sbjct: 1418 cggaactcgtccatcagggactccatcggcatcgctcgcagcgactcgatcgcgtctttg 1359

                                                                        
Query: 280  ctcgggacttccggctcacacctnaccggagtttcaccantcggctcatagtccctgtag 339
            ||||| || ||||||||  |||| ||||||||||| ||  ||||||| |||||| |||||
Sbjct: 1358 ctcggcacctccggctccgacctcaccggagtttcgccggtcggctcgtagtccttgtag 1299

                                              
Query: 340  ctgctttggaaagccttctcggnatgtgtgttga 373
            ||||| |||||||| || ||||  || |||||||
Sbjct: 1298 ctgctctggaaagcgttgtcggcgtgggtgttga 1265
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  159 bits (80), Expect = 9e-36
 Identities = 150/174 (86%)
 Strand = Plus / Plus

                                                                            
Query: 160      ggcgagcgagggatgagcgacggcttgggttccttgctcgattcatagggatggttctca 219
                |||||||||||||||||||| ||| || | ||||||||||  || ||||| |||||||| 
Sbjct: 27935778 ggcgagcgagggatgagcgatggcctgcggtccttgctcggctcgtaggggtggttctcg 27935837

                                                                            
Query: 220      cggaactcatccatcagggactcgattggcatcgctcgcaacgactcgatcgtgcctttg 279
                |||||||| |||||||||||||| || ||||||||||||| ||||||||||| | |||||
Sbjct: 27935838 cggaactcgtccatcagggactccatcggcatcgctcgcagcgactcgatcgcgtctttg 27935897

                                                                      
Query: 280      ctcgggacttccggctcacacctnaccggagtttcaccantcggctcatagtcc 333
                ||||| || ||||||||  |||| ||||||||||| ||  ||||||| ||||||
Sbjct: 27935898 ctcggcacctccggctccgacctcaccggagtttcgccggtcggctcgtagtcc 27935951
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>dbj|AP005524.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0562A06
          Length = 154198

 Score =  159 bits (80), Expect = 9e-36
 Identities = 150/174 (86%)
 Strand = Plus / Plus

                                                                         
Query: 160   ggcgagcgagggatgagcgacggcttgggttccttgctcgattcatagggatggttctca 219
             |||||||||||||||||||| ||| || | ||||||||||  || ||||| |||||||| 
Sbjct: 13270 ggcgagcgagggatgagcgatggcctgcggtccttgctcggctcgtaggggtggttctcg 13329

                                                                         
Query: 220   cggaactcatccatcagggactcgattggcatcgctcgcaacgactcgatcgtgcctttg 279
             |||||||| |||||||||||||| || ||||||||||||| ||||||||||| | |||||
Sbjct: 13330 cggaactcgtccatcagggactccatcggcatcgctcgcagcgactcgatcgcgtctttg 13389

                                                                   
Query: 280   ctcgggacttccggctcacacctnaccggagtttcaccantcggctcatagtcc 333
             ||||| || ||||||||  |||| ||||||||||| ||  ||||||| ||||||
Sbjct: 13390 ctcggcacctccggctccgacctcaccggagtttcgccggtcggctcgtagtcc 13443
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>gb|AF272752.1|AF272752 Zea mays kinesin heavy chain (KIN4) mRNA, partial cds
          Length = 3385

 Score =  109 bits (55), Expect = 8e-21
 Identities = 128/153 (83%)
 Strand = Plus / Minus

                                                                        
Query: 200  attcatagggatggttctcacggaactcatccatcagggactcgattggcatcgctcgca 259
            ||||||| |||||||||||||||||||| | ||||| || ||| || ||||| ||||| |
Sbjct: 3092 attcatacggatggttctcacggaactcgttcatcaaggtctccatgggcatggctcgaa 3033

                                                                        
Query: 260  acgactcgatcgtgcctttgctcgggacttccggctcacacctnaccggagtttcaccan 319
             ||||||||||| ||||||||| || || | ||||||| |||| || |||||||||||  
Sbjct: 3032 gcgactcgatcgagcctttgcttggcacgttcggctcaaacctcactggagtttcacccg 2973

                                             
Query: 320  tcggctcatagtccctgtagctgctttggaaag 352
            ||||||| || ||| |||| ||| |||||||||
Sbjct: 2972 tcggctcgtaatccttgtaactggtttggaaag 2940
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>gb|BT018857.1| Zea mays clone EL01N0556F08.d mRNA sequence
          Length = 2117

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 132/161 (81%)
 Strand = Plus / Minus

                                                                        
Query: 201  ttcatagggatggttctcacggaactcatccatcagggactcgattggcatcgctcgcaa 260
            |||||| |||||||||||||||||||||| ||||| || ||| |  ||||| ||||||| 
Sbjct: 1902 ttcatacggatggttctcacggaactcattcatcatggtctccacgggcatggctcgcag 1843

                                                                        
Query: 261  cgactcgatcgtgcctttgctcgggacttccggctcacacctnaccggagtttcaccant 320
            ||| || |||| ||||||||| || || | ||||||| |||| ||||||||||||||   
Sbjct: 1842 cgattcaatcgagcctttgcttggcacgttcggctcagacctcaccggagtttcacctga 1783

                                                     
Query: 321  cggctcatagtccctgtagctgctttggaaagccttctcgg 361
             || || |||||| |||| ||| |||||| |||||| ||||
Sbjct: 1782 gggttcgtagtccttgtaactggtttggagagccttatcgg 1742
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>gb|AF272755.1|AF272755 Zea mays kinesin heavy chain (KIN8) mRNA, partial cds
          Length = 3514

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 132/161 (81%)
 Strand = Plus / Minus

                                                                        
Query: 201  ttcatagggatggttctcacggaactcatccatcagggactcgattggcatcgctcgcaa 260
            |||||| |||||||||||||||||||||| ||||| || ||| |  ||||| ||||||| 
Sbjct: 3176 ttcatacggatggttctcacggaactcattcatcatggtctccacgggcatggctcgcag 3117

                                                                        
Query: 261  cgactcgatcgtgcctttgctcgggacttccggctcacacctnaccggagtttcaccant 320
            ||| || |||| ||||||||| || || | ||||||| |||| ||||||||||||||   
Sbjct: 3116 cgattcaatcgagcctttgcttggcacgttcggctcagacctcaccggagtttcacctga 3057

                                                     
Query: 321  cggctcatagtccctgtagctgctttggaaagccttctcgg 361
             || || |||||| |||| ||| |||||| |||||| ||||
Sbjct: 3056 gggttcgtagtccttgtaactggtttggagagccttgtcgg 3016
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>gb|AC173289.2| Medicago truncatula chromosome 2 BAC clone mth2-33e9, complete sequence
          Length = 127190

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                       
Query: 118    aaaagaagtattatcattgtttctc 142
              |||||||||||||||||||||||||
Sbjct: 116413 aaaagaagtattatcattgtttctc 116437
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>emb|BX571865.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment
              7/17
          Length = 348813

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 124    agtattatcattgtttctcag 144
              |||||||||||||||||||||
Sbjct: 161975 agtattatcattgtttctcag 161995
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>ref|XM_383550.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG03374.1)
            partial mRNA
          Length = 4185

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 251  tcgctcgcaacgactcgatc 270
            ||||||||||||||||||||
Sbjct: 3898 tcgctcgcaacgactcgatc 3879
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>gb|AC008163.2| Homo sapiens BAC clone RP11-5B9 from 7, complete sequence
          Length = 135300

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 15     aaaaggcactgggtgagggc 34
              ||||||||||||||||||||
Sbjct: 130545 aaaaggcactgggtgagggc 130526
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>gb|AC122269.4| Mus musculus chromosome 7 clone RP23-220G20, complete sequence
          Length = 166529

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      ctagcaagcaatgcaaaagg 20
              ||||||||||||||||||||
Sbjct: 138047 ctagcaagcaatgcaaaagg 138066
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>emb|AL672291.2| Human DNA sequence from clone XX-178 on chromosome 1 Contains two novel
             genes (FLJ22301, FLJ20531), the 5' end of a novel gene and
             three CpG islands, complete sequence
          Length = 31238

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 377   ctgaagtctgtccagagtgg 396
             ||||||||||||||||||||
Sbjct: 10456 ctgaagtctgtccagagtgg 10475
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>emb|CR387936.8| Zebrafish DNA sequence from clone CH211-85P6 in linkage group 8,
             complete sequence
          Length = 170195

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 103   ttacactgcacacagaaaag 122
             ||||||||||||||||||||
Sbjct: 96460 ttacactgcacacagaaaag 96441
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>emb|Z19150.1|RNABSRECB R.norvegicus androgen receptor DNA-binding domain DNA sequence
          Length = 1720

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 107 actgcacacagaaaagaagt 126
           ||||||||||||||||||||
Sbjct: 285 actgcacacagaaaagaagt 304
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>gb|AF229541.1|AF229541 Homo sapiens clone 1qtel949_c126t3_c17t7 sequence
          Length = 739

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 377 ctgaagtctgtccagagtgg 396
           ||||||||||||||||||||
Sbjct: 256 ctgaagtctgtccagagtgg 275
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>gb|AC009487.3| Homo sapiens BAC clone RP11-334E15 from 2, complete sequence
          Length = 183666

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 117   gaaaagaagtattatcattg 136
             ||||||||||||||||||||
Sbjct: 96583 gaaaagaagtattatcattg 96564
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>gb|AC151839.2| Mus musculus BAC clone RP23-191M5 from 7, complete sequence
          Length = 232568

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      ctagcaagcaatgcaaaagg 20
              ||||||||||||||||||||
Sbjct: 172926 ctagcaagcaatgcaaaagg 172907
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>emb|AM050329.1| Unidentified microorganism phagemid clone pBKR.34
          Length = 5700

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  aaaagaagtattatcattgt 137
            ||||||||||||||||||||
Sbjct: 3635 aaaagaagtattatcattgt 3654
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>emb|AL627445.21| Mouse DNA sequence from clone RP23-81D2 on chromosome 11, complete
             sequence
          Length = 216303

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 23    ctgggtgagggctagcatcc 42
             ||||||||||||||||||||
Sbjct: 20755 ctgggtgagggctagcatcc 20774


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,892,679
Number of Sequences: 3902068
Number of extensions: 2892679
Number of successful extensions: 44921
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44885
Number of HSP's gapped (non-prelim): 36
length of query: 440
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 418
effective length of database: 17,147,199,772
effective search space: 7167529504696
effective search space used: 7167529504696
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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