>DPOL_HPBDU (P03162) P protein [Includes: DNA-directed DNA polymerase (EC|
           2.7.7.7); RNA-directed DNA polymerase (EC 2.7.7.49);
           Ribonuclease H (EC 3.1.26.4)]
          Length = 836

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 17/127 (13%)
 Frame = +3

Query: 330 FMVCICNIQLLRHMPL-*PEPLRQDL---RFLRRGLPRCAPSIVLQKALLIQERLLAKHV 497
           F+VC+   QLLR++ +  P PL+Q L   R+LR            +K L + E L+  ++
Sbjct: 34  FLVCVLGCQLLRNIEVEMPRPLKQSLDQSRWLREA----------EKQLRVLENLVDSNL 83

Query: 498 HK-------AIGD-----GRGQPRDPRCQEFGTH-GKCVALDLPHINVL*LEPVYACRHH 638
            +       ++G+     G+G+P  P  +   +H  +   +DLP      L      RHH
Sbjct: 84  EEEKLKPQLSMGEDVQSPGKGEPLHPNVRAPLSHVVRAATIDLPR-----LGNKLPARHH 138

Query: 639 LRPLGVL 659
           L  L  L
Sbjct: 139 LGKLSGL 145

>GAG_HV2G1 (P18041) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 521

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -3

Query: 533 PGLTPTV--ADGLVDMLRQKSFLDEKGFLKNDGRSTPWKAAAEEAKVLPEGFRLERHVTE 360
           PGL PT   AD  VD+L +     ++G  + + R  P+K   E+   L +G    R  TE
Sbjct: 452 PGLIPTAPPADPAVDLLERYM---QQGREQREQRERPYKEVTEDLLHLEQGKAPHREATE 508

Query: 359 EL 354
           +L
Sbjct: 509 DL 510

>PI3K3_DICDI (P54675) Phosphatidylinositol 3-kinase 3 (EC 2.7.1.137)|
           (PI3-kinase) (PtdIns-3-kinase) (PI3K) (Fragment)
          Length = 1585

 Score = 25.4 bits (54), Expect(2) = 6.3
 Identities = 21/73 (28%), Positives = 30/73 (41%)
 Frame = +1

Query: 289 SNHLKISPFSRLVNSWYAYAIFNSSVTCLSSRNPSGKTFASSAAAFQGVLLPSFFRKPFS 468
           SN L +S       SW +    +SS+   SS   +GK    S ++        FF     
Sbjct: 272 SNSLSVSKRMNKFKSWTSSKPTSSSIGFASSPQNNGKPLNISGSS-------RFFTSRQD 324

Query: 469 SKNDFWRSMSTRP 507
           SK D  +S S+ P
Sbjct: 325 SKIDLLKSPSSSP 337



 Score = 23.1 bits (48), Expect(2) = 6.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 182 NHNGASSQNQQYSMNPTSSWPS 247
           N+N ++S N    ++P+SS PS
Sbjct: 215 NNNNSNSNNNNNGISPSSSPPS 236

>STP2_HUMAN (Q05952) Nuclear transition protein 2 (TP-2) (TP2)|
          Length = 138

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +2

Query: 449 SSESPSHPRTTSGEACPQGHRRRSGSTPGSSLPRIRHSRQMRCTGSP 589
           SS+SP+  R  +G     GH+ +S   P +S P  RH + M    SP
Sbjct: 49  SSQSPASHRNPTGAHSSSGHQSQS---PNTSPPPKRHKKTMNSHHSP 92

>GAG_HV2CA (P24106) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 520

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
 Frame = -3

Query: 551 FLAARIP-GLTPTVA--DGLVDMLRQKSFLDEKGFLKNDGRSTPWKAAAEEAKVLPEGFR 381
           F  A++P GLTPT    D  VD+L +     ++G  + + R  P+K   E+   L +G  
Sbjct: 444 FPVAQVPQGLTPTAPPLDPAVDLLEKYM---QQGKRQREQRQRPYKEVTEDLLHLEQGEA 500

Query: 380 LERHVTEEL 354
             R  TE+L
Sbjct: 501 PCRETTEDL 509

>STP2_PANTR (Q9N1A7) Nuclear transition protein 2 (TP-2) (TP2) (Fragment)|
          Length = 133

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +2

Query: 449 SSESPSHPRTTSGEACPQGHRRRSGSTPGSSLPRIRHSRQMRCTGSP 589
           SS+SP+  R  +G     GH+ +S   P +S P  RH + M    SP
Sbjct: 49  SSQSPASHRNPTGAHSSSGHQSQS---PNTSPPPKRHKKTMNSHHSP 92

>STP2_PANPA (Q9N1A6) Nuclear transition protein 2 (TP-2) (TP2) (Fragment)|
          Length = 133

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +2

Query: 449 SSESPSHPRTTSGEACPQGHRRRSGSTPGSSLPRIRHSRQMRCTGSP 589
           SS+SP+  R  +G     GH+ +S   P +S P  RH + M    SP
Sbjct: 49  SSQSPASHRNPTGAHSSSGHQSQS---PNTSPPPKRHKKTMNSHHSP 92

>STP2_GORGO (Q9N1A5) Nuclear transition protein 2 (TP-2) (TP2) (Fragment)|
          Length = 133

 Score = 30.0 bits (66), Expect = 7.1
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +2

Query: 449 SSESPSHPRTTSGEACPQGHRRRSGSTPGSSLPRIRHSRQMRCTGSP 589
           SS+SP+  R  +G     GH+ +S   P +S P  RH + M    SP
Sbjct: 49  SSQSPASHRNPTGAHSSSGHQSQS---PNTSPPPKRHKKTMNSHHSP 92

>CANB_DROME (Q9VT65) Calpain B (EC 3.4.22.-) (Calcium-activated neutral|
           proteinase B) (CANP B) [Contains: Calpain B catalytic
           subunit 1; Calpain B catalytic subunit 2]
          Length = 925

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 35/144 (24%), Positives = 61/144 (42%), Gaps = 6/144 (4%)
 Frame = -3

Query: 686 PPALFVHMPKDAERAQMVAASIDRLKSKHVDVRE-----IQCNAFAVSAEFLAARIPGLT 522
           PP LF  M K AER  M+  S++     HV   E     I+ +A++++   L      ++
Sbjct: 430 PPNLFSIMMKAAERGSMMGCSLE--PDPHVLEAETPQGLIRGHAYSITKVCLM----DIS 483

Query: 521 PTVADGLVDMLRQKSFLDEKGFLKNDGR-STPWKAAAEEAKVLPEGFRLERHVTEELNIA 345
                G + M+R ++         ND   S PW  ++ E + +PE      H  EE+ + 
Sbjct: 484 TPNRQGKLPMIRMRNPWG------NDAEWSGPWSDSSPEWRFIPE------HTKEEIGLN 531

Query: 344 YAYHEFTSLENGEIFKWFDSHMDH 273
           +         +GE +  F   ++H
Sbjct: 532 FD-------RDGEFWMSFQDFLNH 548

>LEU2_AZOVI (P96195) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)|
           (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI)
          Length = 470

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
 Frame = +2

Query: 443 HRSSESPSHPRTTSGEACPQGHRRRS----GSTPGSSLPRIRHSRQMRCTGSPAHQ 598
           H   +   HP +  G    + HRRR+    G+ PG  L R+RH R      +P H+
Sbjct: 59  HPGPQRADHPGSPVGG---RRHRRRNLAHPGADPGRELRRVRHRRVQDERPAPGHR 111

>FHAC_BORPE (P35077) Hemolysin activator-like protein fhaC precursor|
          Length = 584

 Score = 29.6 bits (65), Expect = 9.2
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = -3

Query: 683 PALFVHMPKDAERAQMVAASIDRLKSKHVDVREIQCNAFAVSAEF 549
           P  F  + K A  A  V A +  LKS H D R I+    A    F
Sbjct: 503 PVQFSLLGKQASVAPFVGADVGALKSNHPDARTIRMAGLAAGVRF 547


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,260,681
Number of Sequences: 219361
Number of extensions: 2082943
Number of successful extensions: 6344
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6339
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 6969622431
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)