>RDRP_SMYEA (P28897) RNA replication protein (150 kDa protein) (ORF 1 protein)|
           [Includes: RNA-directed RNA polymerase (EC 2.7.7.48);
           Helicase (EC 3.6.1.-)]
          Length = 1323

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
 Frame = -2

Query: 277 DGXP--APRXSSTGAAMECGLAGV--GGCNG--APRVVVAVEHPSPCCCQRSILVLL 125
           DG P  AP     G   ECG       GC G  APRV + +++ +P C QR +   L
Sbjct: 767 DGWPVLAPGLLKAGNLAECGRRAFTYAGCQGLTAPRVQILLDNDTPLCSQRVMYTAL 823

>PREG_NEUCR (Q06712) Nuc-1 negative regulatory protein preg|
          Length = 483

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 38/163 (23%), Positives = 60/163 (36%), Gaps = 3/163 (1%)
 Frame = +3

Query: 57  SSGCTAVQSFHYNRWLDSLPAGSSNTRMDL*QQHGDGCSTATTTRGAPLQP---PTPARP 227
           S G      FHY        A S    +   +Q     +T++T+    +Q    P P   
Sbjct: 32  SRGAAPHGHFHYAPTPSLREAASRIPALSSRRQSATAPATSSTSLPISIQSRHGPAPVAS 91

Query: 228 HSIAAPVELXRGAGXPSQLRPCFIAAAFLTTTPASAASKHRWSGDAP*QQGSRFIEAPVV 407
           H+ ++PV    G G P   RP   A   +    +        +G     Q +       V
Sbjct: 92  HT-SSPVASDPGLGFPPSSRPQRWAGVDVVAQYSPMEPMDYTTGALLSSQAASSSNNQAV 150

Query: 408 *RCSIAARETLHRSTGGPVMLHSSRGAASSKHRWSGDAP*QHG 536
            R SI +R +   +T GP+  H  + +A +    +  AP  HG
Sbjct: 151 ARGSIESRPSHIPNTVGPMASHEEQASALASTSEATAAPIPHG 193

>YIEI_ECOLI (P31468) Inner membrane protein yieI|
          Length = 155

 Score = 30.8 bits (68), Expect = 3.7
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = -2

Query: 484 PLLLWSITGPPVLR*SVSLAAMEHR*TTGASMKRLPCCYGASPDHRCFDAALAGVVV 314
           PL+LW I  P  L  S++  A+     TG  +  LP   G+   +RC    + GVV+
Sbjct: 36  PLVLWVIIHPIFLLLSITTGAIPAL-LTGVMVACLPEKIGSQKRYRCLAGGIGGVVI 91

>CITE4_HUMAN (Q96RK1) Cbp/p300-interacting transactivator 4 (MSG1-related|
           protein 2) (MRG-2)
          Length = 184

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 20/63 (31%), Positives = 26/63 (41%)
 Frame = +3

Query: 159 GDGCSTATTTRGAPLQPPTPARPHSIAAPVELXRGAGXPSQLRPCFIAAAFLTTTPASAA 338
           G G  +    RGAPL PP P +P ++A         G PS  +P      F    P +A 
Sbjct: 37  GPGLDSGLRPRGAPLGPPPPRQPGALA-----YGAFGPPSSFQP------FPAVPPPAAG 85

Query: 339 SKH 347
             H
Sbjct: 86  IAH 88

>ITB5_MOUSE (O70309) Integrin beta-5 precursor|
          Length = 798

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 21/52 (40%), Positives = 23/52 (44%), Gaps = 8/52 (15%)
 Frame = -3

Query: 168 IHPRAA------VKDPSSCC--CXLLANYRANGCNGRIERLCSRMIXLRNQP 37
           IHP+ A        +P S    C L AN   NGC G IE   S    LRN P
Sbjct: 42  IHPKCAWCSKEYFGNPRSITSRCDLKANLIRNGCEGEIESPASSTHVLRNLP 93

>HORN_MOUSE (Q8VHD8) Hornerin|
          Length = 2496

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 2/94 (2%)
 Frame = +2

Query: 341  EASVVRRCSIAAGEPLH*STGGLAMLHSSKG--DASSKHWWSGDAP*QQGSRFIEAPVVR 514
            E+S  +RC   +GE    S GG     SS+G    S     SG +  Q GSR        
Sbjct: 1662 ESSTSQRCGSGSGESSGFSQGGSGQGRSSRGGQQGSFSGQTSGRSQHQSGSR--HGSGSG 1719

Query: 515  RCSIAAREPLHRSTGGLAMLHSXKGDASSXHRWS 616
            +  I+ ++  H      +  H+     SS  +WS
Sbjct: 1720 QFPISGQQGSHHGHSSSSGTHNSGSSQSSSTQWS 1753

>SELO_HUMAN (Q9BVL4) Selenoprotein O|
          Length = 669

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = -2

Query: 334 ALAGVVVRNAAAMKHGRSCDGXPAPRXSSTGAAMECG---LAGVGGCNGAPRVVVAVEHP 164
           A  G  +  A  +  GR C   PAPR + +GAAME     LAG+   N A R  + VE P
Sbjct: 6   AALGASLAAARLLPLGR-CSPSPAPRSTLSGAAMEPAPRWLAGLRFDNRALR-ALPVEAP 63

Query: 163 SP 158
            P
Sbjct: 64  PP 65

>WBP11_HUMAN (Q9Y2W2) WW domain-binding protein 11 (WBP-11) (SH3 domain-binding|
           protein SNP70) (Npw38-binding protein) (NpwBP)
          Length = 641

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 9/56 (16%)
 Frame = +3

Query: 150 QQHGDGCSTATTTRGAPLQ---------PPTPARPHSIAAPVELXRGAGXPSQLRP 290
           + H DG STA++ + AP Q         PP P  P     P    R  G P+ L P
Sbjct: 377 ESHSDGTSTASSQQQAPPQSVPPSQIQAPPMPGPPPLGPPPAPPLRPPGPPTGLPP 432

>IE18_PRVKA (P33479) Immediate-early protein IE180|
          Length = 1446

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 21/80 (26%), Positives = 32/80 (40%)
 Frame = +3

Query: 117 AGSSNTRMDL*QQHGDGCSTATTTRGAPLQPPTPARPHSIAAPVELXRGAGXPSQLRPCF 296
           AGS    +    +HG       +  G+  +PPTPA     A         G P +  P  
Sbjct: 117 AGSPGRALHQGSEHGHLVLGPRSRAGSGPRPPTPA-----ALAAAEAGAPGGPGRSSPSA 171

Query: 297 IAAAFLTTTPASAASKHRWS 356
            + A  + +P  +A+  RWS
Sbjct: 172 ASPASSSGSPGPSAAPRRWS 191

>RSMB_CHICK (Q9PV94) Small nuclear ribonucleoprotein-associated protein B'|
           (snRNP-B') (Sm protein B') (Sm-B') (SmB') (snRPB')
          Length = 240

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = +3

Query: 189 RGAPLQPPTPARPHSIAAPVELXRGAGXPSQ 281
           RG P   P P  P  +A PV   RG G PSQ
Sbjct: 112 RGVPAGAPMPQAPAGLAGPV---RGVGGPSQ 139

>TSP1_BOVIN (Q28178) Thrombospondin-1 precursor|
          Length = 1170

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = -1

Query: 470 EHHRTTSASMKRLPCCYGASLDHRCFNEAAPLLLWSIAGPPMLRCSTRRSCCQKCSC 300
           E ++  +  ++R P CY   + +R  +E      W++      RC    + C+K SC
Sbjct: 303 EENKELANELRRPPLCYHNGVQYRTGDE------WTVDSCTECRCQNSVTICKKVSC 353


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,052,929
Number of Sequences: 219361
Number of extensions: 2095013
Number of successful extensions: 6868
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6823
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6314008338
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)