ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbags1a08 |
|---|---|
| Clone Library Name | barley_pub |
>ACLY_MOUSE (Q91V92) ATP-citrate synthase (EC 2.3.3.8) (ATP-citrate| (pro-S-)-lyase) (Citrate cleavage enzyme) Length = 1091 Score = 149 bits (375), Expect = 7e-36 Identities = 72/140 (51%), Positives = 94/140 (67%) Frame = -3 Query: 575 GGASVIYADTVGDLGYASELGNYAEYSGAPKEEEVLHYARVVLDCATADPDGRKRALLIG 396 GGASV+Y+DT+ DLG +EL NY EYSGAP E++ YA+ +L T + + L+IG Sbjct: 282 GGASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPEGKILIIG 341 Query: 395 GGIANFTDVAATFSGIIRALREKESKLKAARVNIYVRRGGPNYQTGLAKMRALGSELGLP 216 G IANFT+VAATF GI+RA+R+ + LK V I+VRRGGPNYQ GL M +G G+P Sbjct: 342 GSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTGIP 401 Query: 215 IEVYGPEATMTGICKQAIDY 156 I V+G E MT I A+ + Sbjct: 402 IHVFGTETHMTAIVGMALGH 421
>ACLY_HUMAN (P53396) ATP-citrate synthase (EC 2.3.3.8) (ATP-citrate| (pro-S-)-lyase) (Citrate cleavage enzyme) Length = 1101 Score = 148 bits (374), Expect = 1e-35 Identities = 75/142 (52%), Positives = 97/142 (68%), Gaps = 2/142 (1%) Frame = -3 Query: 575 GGASVIYADTVGDLGYASELGNYAEYSGAPKEEEVLHYARVVLDCATAD--PDGRKRALL 402 GGASV+Y+DT+ DLG +EL NY EYSGAP E++ YA+ +L T + PDG+ L+ Sbjct: 282 GGASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGK--ILI 339 Query: 401 IGGGIANFTDVAATFSGIIRALREKESKLKAARVNIYVRRGGPNYQTGLAKMRALGSELG 222 IGG IANFT+VAATF GI+RA+R+ + LK V I+VRRGGPNYQ GL M +G G Sbjct: 340 IGGSIANFTNVAATFKGIVRAIRDYQGPLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTG 399 Query: 221 LPIEVYGPEATMTGICKQAIDY 156 +PI V+G E MT I A+ + Sbjct: 400 IPIHVFGTETHMTAIVGMALGH 421
>ACLY_RAT (P16638) ATP-citrate synthase (EC 2.3.3.8) (ATP-citrate| (pro-S-)-lyase) (Citrate cleavage enzyme) Length = 1100 Score = 147 bits (372), Expect = 2e-35 Identities = 75/139 (53%), Positives = 95/139 (68%), Gaps = 2/139 (1%) Frame = -3 Query: 575 GGASVIYADTVGDLGYASELGNYAEYSGAPKEEEVLHYARVVLDCATAD--PDGRKRALL 402 GGASV+Y+DT+ DLG +EL NY EYSGAP E++ YA+ +L T + PDG+ L+ Sbjct: 282 GGASVVYSDTICDLGGVNELANYGEYSGAPSEQQTYDYAKTILSLMTREKHPDGK--ILI 339 Query: 401 IGGGIANFTDVAATFSGIIRALREKESKLKAARVNIYVRRGGPNYQTGLAKMRALGSELG 222 IGG IANFT+VAATF GI+RA+R+ + LK V I+VRRGGPNYQ GL M +G G Sbjct: 340 IGGSIANFTNVAATFKGIVRAIRDYQGSLKEHEVTIFVRRGGPNYQEGLRVMGEVGKTTG 399 Query: 221 LPIEVYGPEATMTGICKQA 165 +PI V+G E MT I A Sbjct: 400 IPIHVFGTETHMTAIVGMA 418
>ACLY_CAEEL (P53585) Probable ATP-citrate synthase (EC 2.3.3.8) (ATP-citrate| (pro-S-)-lyase) (Citrate cleavage enzyme) Length = 1106 Score = 143 bits (360), Expect = 4e-34 Identities = 76/141 (53%), Positives = 94/141 (66%), Gaps = 3/141 (2%) Frame = -3 Query: 575 GGASVIYADTVGDLGYASELGNYAEYSGAPKEEEVLHYARVVLDCATAD---PDGRKRAL 405 GGASV++ DTV DLG ASEL NY EYSG P E + YA+ +L T PDG+ L Sbjct: 293 GGASVVFTDTVCDLGGASELANYGEYSGDPSESQTYEYAKTLLSVMTEGTPRPDGK--VL 350 Query: 404 LIGGGIANFTDVAATFSGIIRALREKESKLKAARVNIYVRRGGPNYQTGLAKMRALGSEL 225 +IGG IANFT+VA TF GI+RA SKLK +V I+VRRGGPNYQ GL +++ ++L Sbjct: 351 IIGGSIANFTNVAKTFGGIVRAFETFVSKLKEHKVTIFVRRGGPNYQEGLRRIKDAATKL 410 Query: 224 GLPIEVYGPEATMTGICKQAI 162 LPI V+GPE MT I A+ Sbjct: 411 ELPIHVFGPETHMTAIVGAAL 431
>HCP_CHLTE (Q8KBT4) Hydroxylamine reductase (EC 1.7.-.-) (Hybrid-cluster| protein) (HCP) Length = 539 Score = 33.9 bits (76), Expect = 0.34 Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 3/66 (4%) Frame = -3 Query: 551 DTVGDLGYASELGNYAEYSGAPKEEEVLHYARVVLDCATADPDGRK-RALLIGG--GIAN 381 D V L + + A +SG+ KEE + A +D +ADPD R ++L++ G G+A Sbjct: 89 DEVRALAGTTPAHDAANWSGSTKEEFLAKAAACSIDSLSADPDLRSLKSLILYGIKGLAA 148 Query: 380 FTDVAA 363 +TD AA Sbjct: 149 YTDHAA 154
>SUCC1_STRCO (Q9KY56) Succinyl-CoA synthetase beta chain 1 (EC 6.2.1.5)| (SCS-beta 1) Length = 394 Score = 32.3 bits (72), Expect = 0.99 Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 6/112 (5%) Frame = -3 Query: 575 GGASVIYADTVGDLGYASEL------GNYAEYSGAPKEEEVLHYARVVLDCATADPDGRK 414 G + + T+ + YA E N+ + G + + + ++L DPD R Sbjct: 256 GNGAGLVMSTLDVVAYAGEAHGNVKPANFLDIGGGASAQVMANGLEIIL----GDPDVRS 311 Query: 413 RALLIGGGIANFTDVAATFSGIIRALREKESKLKAARVNIYVRRGGPNYQTG 258 + + GGI +VA +GI++AL+ E + + + VR G N + G Sbjct: 312 VFVNVFGGITACDEVA---NGIVQALKLLEDRGEKVEKPLVVRLDGNNAELG 360
>KURT_PARTR (P58910) Kurtoxin (Ktx)| Length = 63 Score = 31.6 bits (70), Expect = 1.7 Identities = 14/34 (41%), Positives = 21/34 (61%) Frame = +3 Query: 105 NCKHRXLYNDESCFSHDVINGLLADSSHCGLWSI 206 NCK YN++ C +D+ GL ADS +C W++ Sbjct: 11 NCKRICWYNNKYC--NDLCKGLKADSGYCWGWTL 42
>PGK_DESVH (P62412) Phosphoglycerate kinase (EC 2.7.2.3)| Length = 393 Score = 30.8 bits (68), Expect = 2.9 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 1/72 (1%) Frame = -3 Query: 407 LLIGGGIANFTDVAATFSGIIRALREKESKLKAARVNIYVRRGGPNYQTGLAKMRALGSE 228 L++GGGIAN AA + + ++L E E +AAR+ +A RA G E Sbjct: 211 LIVGGGIANNFIKAAGYE-VGKSLYEPELVEEAARL--------------MAAARAAGGE 255 Query: 227 LGLPIE-VYGPE 195 + +P++ V GPE Sbjct: 256 IPVPLDVVVGPE 267
>SUCC_METTH (O27115) Succinyl-CoA synthetase beta chain (EC 6.2.1.5) (SCS-beta)| Length = 365 Score = 30.8 bits (68), Expect = 2.9 Identities = 29/104 (27%), Positives = 43/104 (41%) Frame = -3 Query: 521 ELGNYAEYSGAPKEEEVLHYARVVLDCATADPDGRKRALLIGGGIANFTDVAATFSGIIR 342 E + + G E+ + R LD + P R L + GGI DVA G++ Sbjct: 261 EPATFLDIGGGASEDVI----RRALDLVISHPSVRVVFLNVLGGITRADDVA---RGVVN 313 Query: 341 ALREKESKLKAARVNIYVRRGGPNYQTGLAKMRALGSELGLPIE 210 ALR+ V + +R G N + G +R E G+P E Sbjct: 314 ALRDARRD-----VPLVIRLTGTNEEEGQRILR----EAGIPFE 348
>CHI2_CANAL (P40953) Chitinase 2 precursor (EC 3.2.1.14)| Length = 583 Score = 30.8 bits (68), Expect = 2.9 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%) Frame = -3 Query: 512 NYAEYSGAPKEEEVLHYARVVLDCATADPDGRKRALLIGGGIAN--FTDVAA 363 N+A G E +LH +++ D T G+ L +GGG+ + F+DVA+ Sbjct: 67 NFANQCGNTFESGLLHCSQIGADIKTCQSLGKTVLLSLGGGVGDYGFSDVAS 118
>BCSA_SALTY (Q93IN2) Cellulose synthase catalytic subunit [UDP-forming] (EC| 2.4.1.12) Length = 874 Score = 30.8 bits (68), Expect = 2.9 Identities = 30/122 (24%), Positives = 49/122 (40%) Frame = -3 Query: 518 LGNYAEYSGAPKEEEVLHYARVVLDCATADPDGRKRALLIGGGIANFTDVAATFSGIIRA 339 LG S K+ H + + A A DG L + +F+D G+ Sbjct: 682 LGGAVAVSVESKQVRRAHRVEIAMPGAIAREDGH----LFSCTVHDFSD-----GGLGIK 732 Query: 338 LREKESKLKAARVNIYVRRGGPNYQTGLAKMRALGSELGLPIEVYGPEATMTGICKQAID 159 + + L+ +VN+ ++RG Y +R G+E+GL + M KQ ID Sbjct: 733 INGQAQVLEGQKVNLLLKRGQQEYVFPTQVVRVTGNEVGLQL--------MPLTTKQHID 784 Query: 158 YV 153 +V Sbjct: 785 FV 786
>BCSA_SALTI (Q8Z291) Cellulose synthase catalytic subunit [UDP-forming] (EC| 2.4.1.12) Length = 874 Score = 30.8 bits (68), Expect = 2.9 Identities = 30/122 (24%), Positives = 49/122 (40%) Frame = -3 Query: 518 LGNYAEYSGAPKEEEVLHYARVVLDCATADPDGRKRALLIGGGIANFTDVAATFSGIIRA 339 LG S K+ H + + A A DG L + +F+D G+ Sbjct: 682 LGGAVAVSVESKQVRRAHRVEIAMPGAIAREDGH----LFSCTVHDFSD-----GGLGIK 732 Query: 338 LREKESKLKAARVNIYVRRGGPNYQTGLAKMRALGSELGLPIEVYGPEATMTGICKQAID 159 + + L+ +VN+ ++RG Y +R G+E+GL + M KQ ID Sbjct: 733 INGQAQVLEGQKVNLLLKRGQQEYVFPTQVVRVTGNEVGLQL--------MPLTTKQHID 784 Query: 158 YV 153 +V Sbjct: 785 FV 786
>PHSH_VICFA (P53537) Alpha-glucan phosphorylase, H isozyme (EC 2.4.1.1) (Starch| phosphorylase H) Length = 842 Score = 30.4 bits (67), Expect = 3.8 Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 11/104 (10%) Frame = -3 Query: 428 PDGRK----RALLIGG-GIANFTD------VAATFSGIIRALREKESKLKAARVNIYVRR 282 P+ RK R ++IGG A +T+ + ++ + E S LK V Sbjct: 600 PEERKSTTARTVMIGGKAFATYTNAKRIVKLVDDVGSVVNSDPEVNSYLKVVFV------ 653 Query: 281 GGPNYQTGLAKMRALGSELGLPIEVYGPEATMTGICKQAIDYVM 150 PNY +A++ GSEL I G EA+ T K A++ V+ Sbjct: 654 --PNYNVSVAEVLIPGSELSQHISTAGMEASGTSNMKFALNRVL 695
>UL76_HCMVA (P16725) Protein UL76| Length = 325 Score = 29.6 bits (65), Expect = 6.4 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Frame = -3 Query: 371 VAATFSGIIRALREKESKLKAARVNIYVR-RGGPNYQTGLAKMRALG 234 +AAT ++R R K + L AR + RGG N + GLA+ RA G Sbjct: 201 LAATRRRLLRTARGKRAALPRARASAVAGGRGGDNARRGLARGRAHG 247
>BCSA_ECOLI (P37653) Cellulose synthase catalytic subunit [UDP-forming] (EC| 2.4.1.12) Length = 872 Score = 29.6 bits (65), Expect = 6.4 Identities = 24/102 (23%), Positives = 42/102 (41%) Frame = -3 Query: 518 LGNYAEYSGAPKEEEVLHYARVVLDCATADPDGRKRALLIGGGIANFTDVAATFSGIIRA 339 LG S K+ H + + A A DG L + +F+D G+ Sbjct: 682 LGGAVAVSVESKQVRRSHRVEMTMPAAIAREDGH----LFSCTVQDFSD-----GGLGIK 732 Query: 338 LREKESKLKAARVNIYVRRGGPNYQTGLAKMRALGSELGLPI 213 + + L+ +VN+ ++RG Y R +G+E+GL + Sbjct: 733 INGQAQILEGQKVNLLLKRGQQEYVFPTQVARVMGNEVGLKL 774
>BCSA_ECO57 (Q8X5L7) Cellulose synthase catalytic subunit [UDP-forming] (EC| 2.4.1.12) Length = 872 Score = 29.6 bits (65), Expect = 6.4 Identities = 24/102 (23%), Positives = 42/102 (41%) Frame = -3 Query: 518 LGNYAEYSGAPKEEEVLHYARVVLDCATADPDGRKRALLIGGGIANFTDVAATFSGIIRA 339 LG S K+ H + + A A DG L + +F+D G+ Sbjct: 682 LGGAVAVSVESKQVRRSHRVEMTMPAAIAREDGH----LFSCTVQDFSD-----GGLGIK 732 Query: 338 LREKESKLKAARVNIYVRRGGPNYQTGLAKMRALGSELGLPI 213 + + L+ +VN+ ++RG Y R +G+E+GL + Sbjct: 733 INGQAQILEGQKVNLLLKRGQQEYVFPTQVARVMGNEVGLKL 774
>GATD_SULSO (Q97ZH5) Glutamyl-tRNA(Gln) amidotransferase subunit D (EC 6.3.5.-)| (Glu-ADT subunit D) Length = 444 Score = 29.3 bits (64), Expect = 8.4 Identities = 19/49 (38%), Positives = 27/49 (55%) Frame = +1 Query: 118 GNYTMTNHASAMT*SMACLQIPVIVASGP*TSIGRPSSDPRARILASPV 264 G TM ASA+ S+ LQ PV++ G S RPSSD +L++ + Sbjct: 177 GTDTMAYTASALAFSLRSLQGPVVLV-GSQRSSDRPSSDSAINLLSAVI 224
>ETFB_RAT (Q68FU3) Electron transfer flavoprotein beta-subunit (Beta-ETF)| Length = 254 Score = 29.3 bits (64), Expect = 8.4 Identities = 20/54 (37%), Positives = 28/54 (51%) Frame = -3 Query: 341 ALREKESKLKAARVNIYVRRGGPNYQTGLAKMRALGSELGLPIEVYGPEATMTG 180 A+R KE KL + I V G P Q + A+G++ G+ +EV G EA G Sbjct: 48 AVRLKEKKL--VKEIIAVSCGPPQCQETIRTALAMGADRGIHVEVPGAEAENLG 99
>PPOX_BACSU (P32397) Protoporphyrinogen oxidase (EC 1.3.3.4) (PPO)| Length = 470 Score = 29.3 bits (64), Expect = 8.4 Identities = 19/50 (38%), Positives = 28/50 (56%) Frame = -3 Query: 425 DGRKRALLIGGGIANFTDVAATFSGIIRALREKESKLKAARVNIYVRRGG 276 DG+K ++IGGGI T +AA F + + ++EK L+ V R GG Sbjct: 3 DGKKHVVIIGGGI---TGLAAAFY-MEKEIKEKNLPLELTLVEASPRVGG 48
>PGK_CHRVO (Q7P1M4) Phosphoglycerate kinase (EC 2.7.2.3)| Length = 391 Score = 29.3 bits (64), Expect = 8.4 Identities = 23/67 (34%), Positives = 34/67 (50%) Frame = -3 Query: 407 LLIGGGIANFTDVAATFSGIIRALREKESKLKAARVNIYVRRGGPNYQTGLAKMRALGSE 228 L++GGGIAN T + A I ++L E + A RV +AK+RA G + Sbjct: 211 LIVGGGIAN-TFLLAEGKAIGKSLAEADLVEDARRV--------------IAKIRARGGD 255 Query: 227 LGLPIEV 207 + LP +V Sbjct: 256 VPLPADV 262
>PLXC1_HUMAN (O60486) Plexin-C1 precursor (Virus-encoded semaphorin protein| receptor) Length = 1568 Score = 29.3 bits (64), Expect = 8.4 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Frame = -3 Query: 476 EVLHYARVVLDCATADPDGRKRALLIGGGIANFTDV-AATFSGIIRALREKESKLKAA 306 EVL + LDC PDGR+ LL+ + DV A FS +E+ S A Sbjct: 272 EVLFQGQASLDCGHGHPDGRR--LLLSSSLVEALDVWAGVFSAAAGEGQERRSPTTTA 327
>PHEA_SYNY1 (P20778) C-phycoerythrin alpha chain| Length = 164 Score = 29.3 bits (64), Expect = 8.4 Identities = 23/72 (31%), Positives = 34/72 (47%) Frame = -3 Query: 419 RKRALLIGGGIANFTDVAATFSGIIRALREKESKLKAARVNIYVRRGGPNYQTGLAKMRA 240 +K + L G AN TD TF + LR+ + L+ ++ V GP + G+A R Sbjct: 61 KKYSYLNNAGEANSTD---TFKA--KCLRDIKHYLRLINYSLVVGGTGPLDEWGIAGQRE 115 Query: 239 LGSELGLPIEVY 204 + LGLP Y Sbjct: 116 VYRTLGLPTAPY 127
>KDSA_SYNPX (Q7U9S3) 2-dehydro-3-deoxyphosphooctonate aldolase (EC 2.5.1.55)| (Phospho-2-dehydro-3-deoxyoctonate aldolase) (3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase) (KDO-8-phosphate synthetase) (KDO 8-P synthase) (KDOPS) Length = 283 Score = 29.3 bits (64), Expect = 8.4 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 10/85 (11%) Frame = -3 Query: 419 RKRALLIGGGIANFTDVAATFSGIIRALRE--------KESKLKAARVNIYVRRGGPNYQ 264 R ALL G + D A +G + + E K S KA R +I+ RG P + Sbjct: 17 RPFALLGGVNVLEDLDFALRCAGHYKQVCERLGIPLVFKASYDKANRSSIHSFRG-PGLE 75 Query: 263 TGLAKMRALGSELGLPI--EVYGPE 195 GL ++A+ LG+P+ +V+ PE Sbjct: 76 AGLQILQAVKDTLGIPVITDVHSPE 100 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,330,022 Number of Sequences: 219361 Number of extensions: 1894568 Number of successful extensions: 5448 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 5309 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5446 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4872342800 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
