ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags1a04 |
|---|---|
| Clone Library Name | barley_pub |
>GALM_HUMAN (Q96C23) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase)| (BLOCK25 protein) Length = 342 Score = 137 bits (346), Expect = 2e-32 Identities = 68/153 (44%), Positives = 97/153 (63%), Gaps = 2/153 (1%) Frame = -2 Query: 590 DHSIQIWAKHITPVNENTIPTGEIMSVQDTPFDFTTEHRIGDRINDVP-GGYDHNYVLDS 414 DH + I A PV+E IPTGE+ VQ T FD +G + D G+DHN+ L Sbjct: 191 DHEVTIEADTYLPVDETLIPTGEVAPVQGTAFDLRKPVELGKHLQDFHLNGFDHNFCLKG 250 Query: 413 GDEKNGLKHAAKLKDSSSSRTLDLWTDAPGMQFYTANYVNG-ITGKGGAVYGKHAGVCLE 237 EK+ A++ ++S R L+++T PG+QFYT N+++G + GK GAVY KH+G CLE Sbjct: 251 SKEKH---FCARVHHAASGRVLEVYTTQPGVQFYTGNFLDGTLKGKNGAVYPKHSGFCLE 307 Query: 236 TQGFPNAINQTNFPSVVVQPGAKYKHTMLFEFS 138 TQ +P+A+NQ FP V+++PG +Y HT F+FS Sbjct: 308 TQNWPDAVNQPRFPPVLLRPGEEYDHTTWFKFS 340
>GALM_PIG (Q9GKX6) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase)| Length = 342 Score = 137 bits (344), Expect = 3e-32 Identities = 69/153 (45%), Positives = 96/153 (62%), Gaps = 2/153 (1%) Frame = -2 Query: 590 DHSIQIWAKHITPVNENTIPTGEIMSVQDTPFDFTTEHRIGDRINDVP-GGYDHNYVLDS 414 DH + I A PV+E IPTGEI VQ T FD +G + + G+DHN+ L Sbjct: 191 DHEVTIEADAFLPVDETLIPTGEIAPVQGTAFDLRKPVELGKHLQEFHINGFDHNFCLKR 250 Query: 413 GDEKNGLKHAAKLKDSSSSRTLDLWTDAPGMQFYTANYVNG-ITGKGGAVYGKHAGVCLE 237 EK + A++ + S R L+++T PG+QFYT N+++G + GK GAVY KH+G CLE Sbjct: 251 SKEK---QFCARVHHAGSGRVLEVYTTQPGIQFYTGNFLDGTLKGKTGAVYPKHSGFCLE 307 Query: 236 TQGFPNAINQTNFPSVVVQPGAKYKHTMLFEFS 138 TQ +PNA+NQ +FP V+++PG +Y HT F FS Sbjct: 308 TQNWPNAVNQPHFPPVLLKPGEEYNHTTWFVFS 340
>GALM_PONPY (Q5R8U1) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase)| Length = 342 Score = 135 bits (340), Expect = 9e-32 Identities = 67/153 (43%), Positives = 96/153 (62%), Gaps = 2/153 (1%) Frame = -2 Query: 590 DHSIQIWAKHITPVNENTIPTGEIMSVQDTPFDFTTEHRIGDRINDVP-GGYDHNYVLDS 414 DH + I A PV+E IPTGE+ VQ T FD +G + D G+DHN+ L Sbjct: 191 DHEVTIEADTYLPVDETLIPTGEVAPVQGTAFDLRKPVELGKHLQDFHLNGFDHNFCLKG 250 Query: 413 GDEKNGLKHAAKLKDSSSSRTLDLWTDAPGMQFYTANYVNG-ITGKGGAVYGKHAGVCLE 237 EK+ A++ ++S R L+++T PG+QFY N+++G + GK GAVY KH+G CLE Sbjct: 251 SKEKH---FCARVHHAASGRVLEVYTTQPGVQFYMGNFLDGTLKGKNGAVYPKHSGFCLE 307 Query: 236 TQGFPNAINQTNFPSVVVQPGAKYKHTMLFEFS 138 TQ +P+A+NQ FP V+++PG +Y HT F+FS Sbjct: 308 TQNWPDAVNQPRFPPVLLRPGEEYDHTTWFKFS 340
>GALM_BOVIN (Q5EA79) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase)| Length = 342 Score = 135 bits (340), Expect = 9e-32 Identities = 68/153 (44%), Positives = 97/153 (63%), Gaps = 2/153 (1%) Frame = -2 Query: 590 DHSIQIWAKHITPVNENTIPTGEIMSVQDTPFDFTTEHRIGDRINDVP-GGYDHNYVLDS 414 DH + I A PV+E IPTGEI SVQ T FD +G + + G+DHN+ L Sbjct: 191 DHEVTIEADAFLPVDEVLIPTGEIASVQGTAFDLRKPVELGKHLQEFHVNGFDHNFCLKG 250 Query: 413 GDEKNGLKHAAKLKDSSSSRTLDLWTDAPGMQFYTANYVNG-ITGKGGAVYGKHAGVCLE 237 EK + A++ + S R L+++T PG+QFYT N+++G + GK GA Y KH+G CLE Sbjct: 251 SKEK---RFCARVHHAGSGRVLEVYTTQPGVQFYTGNFLDGTLKGKSGAGYPKHSGFCLE 307 Query: 236 TQGFPNAINQTNFPSVVVQPGAKYKHTMLFEFS 138 TQ +P+A+NQ +FP V+++PG +Y HT F+FS Sbjct: 308 TQSWPDAVNQPHFPPVLLKPGEEYDHTTWFKFS 340
>GALM_MOUSE (Q8K157) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase)| Length = 342 Score = 134 bits (337), Expect = 2e-31 Identities = 66/153 (43%), Positives = 97/153 (63%), Gaps = 2/153 (1%) Frame = -2 Query: 590 DHSIQIWAKHITPVNENTIPTGEIMSVQDTPFDFTTEHRIGDRINDVP-GGYDHNYVLDS 414 DH + I A PV+E IPTG I V+ T FD +G + D G+DHN+ L Sbjct: 191 DHEVTIAADAYLPVDETLIPTGVIAPVEGTAFDLRKPVELGTHLQDYHIHGFDHNFCLKE 250 Query: 413 GDEKNGLKHAAKLKDSSSSRTLDLWTDAPGMQFYTANYVNG-ITGKGGAVYGKHAGVCLE 237 EK K A+++ ++S R L+++T PG+QFYT N+++G + GK GAVY KH+G+CLE Sbjct: 251 SKEK---KFCARVRHAASGRILEVYTTQPGVQFYTGNFLDGTLKGKNGAVYPKHSGLCLE 307 Query: 236 TQGFPNAINQTNFPSVVVQPGAKYKHTMLFEFS 138 TQ +P+++NQ FP +++PG +Y HT F+FS Sbjct: 308 TQNWPDSVNQPQFPPALLRPGEEYNHTTWFKFS 340
>GALM_RAT (Q66HG4) Aldose 1-epimerase (EC 5.1.3.3) (Galactose mutarotase)| Length = 342 Score = 130 bits (327), Expect = 3e-30 Identities = 65/153 (42%), Positives = 94/153 (61%), Gaps = 2/153 (1%) Frame = -2 Query: 590 DHSIQIWAKHITPVNENTIPTGEIMSVQDTPFDFTTEHRIGDRINDVP-GGYDHNYVLDS 414 DH + I A PV+E IPTG I V+ T FD +G + G+DHN+ L Sbjct: 191 DHEVTIAADAYLPVDETLIPTGVIAPVEGTAFDLRKPVELGKHLQSYHIHGFDHNFCLKE 250 Query: 413 GDEKNGLKHAAKLKDSSSSRTLDLWTDAPGMQFYTANYVNG-ITGKGGAVYGKHAGVCLE 237 EK K A++ ++S R L+++T PG+QFYT N+++G + GK G VY KH+G CLE Sbjct: 251 SKEK---KFCARVHHAASGRILEVYTTQPGVQFYTGNFLDGTLKGKSGEVYPKHSGFCLE 307 Query: 236 TQGFPNAINQTNFPSVVVQPGAKYKHTMLFEFS 138 TQ +P+A+NQ FP ++++PG +Y HT F+FS Sbjct: 308 TQNWPDAVNQPQFPPILLRPGEEYNHTTWFKFS 340
>GALM_ACICA (P05149) Aldose 1-epimerase precursor (EC 5.1.3.3) (Mutarotase)| Length = 381 Score = 95.9 bits (237), Expect = 8e-20 Identities = 58/161 (36%), Positives = 85/161 (52%), Gaps = 10/161 (6%) Frame = -2 Query: 593 LDHSIQIWAKHITPVNENTIPTGEIMSVQDTPFDFTTEHRIGDRINDVPG---------G 441 LDH +Q+ A I ++N++PTGEI SV TPFDF I + D+ G Sbjct: 221 LDHVVQLNAGRILVTDQNSLPTGEIASVAGTPFDFRMPKAI---VKDIRANNQQLAYGYG 277 Query: 440 YDHNYVLDSGDEKNGLKHAAKLKDSSSSRTLDLWTDAPGMQFYTANYVNG-ITGKGGAVY 264 YD +V++ + L AA + D S RT+ + T P +Q YTA+++ G I G G +Y Sbjct: 278 YDQTWVINQKSQGK-LNLAAIVVDPKSKRTMQVLTTEPSVQMYTADHLLGNIVGANGVLY 336 Query: 263 GKHAGVCLETQGFPNAINQTNFPSVVVQPGAKYKHTMLFEF 141 + + LETQ FP++ NQ FPS + P Y +F+F Sbjct: 337 RQADALALETQHFPDSPNQPTFPSTRLNPNQTYNSVTVFKF 377
>GALM_SHIFL (P0A9C4) Aldose 1-epimerase (EC 5.1.3.3) (Mutarotase)| Length = 346 Score = 76.3 bits (186), Expect = 6e-14 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 7/159 (4%) Frame = -2 Query: 590 DHSIQIWAKHITPVNENTIPTGEIMSVQDTPFDFTT-----EHRIGDRINDVPGGYDHNY 426 +H +QI A PV+E IP + SV T FDF + + D GYDH + Sbjct: 189 NHKLQILADEYLPVDEGGIPHDGLKSVAGTSFDFRSAKIIASEFLADDDQRKVKGYDHAF 248 Query: 425 VLDSGDEKNGLKHAAKLKDSSSSRTLDLWTDAPGMQFYTANYVNGITGKGGAVYGKHAGV 246 +L + + +G K AA + + L ++T AP +QFY+ N++ G +G Y G+ Sbjct: 249 LLQA--KGDGKKVAAHVWSADEKLQLKVYTTAPALQFYSGNFLGGTPSRGTEPYADWQGL 306 Query: 245 CLETQGFPNAINQTNF--PSVVVQPGAKYKHTMLFEFSA 135 LE++ P++ N + P ++PG +Y ++F A Sbjct: 307 ALESEFLPDSPNHPEWPQPDCFLRPGEEYSSLTEYQFIA 345
>GALM_ECOLI (P0A9C3) Aldose 1-epimerase (EC 5.1.3.3) (Mutarotase)| Length = 346 Score = 76.3 bits (186), Expect = 6e-14 Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 7/159 (4%) Frame = -2 Query: 590 DHSIQIWAKHITPVNENTIPTGEIMSVQDTPFDFTT-----EHRIGDRINDVPGGYDHNY 426 +H +QI A PV+E IP + SV T FDF + + D GYDH + Sbjct: 189 NHKLQILADEYLPVDEGGIPHDGLKSVAGTSFDFRSAKIIASEFLADDDQRKVKGYDHAF 248 Query: 425 VLDSGDEKNGLKHAAKLKDSSSSRTLDLWTDAPGMQFYTANYVNGITGKGGAVYGKHAGV 246 +L + + +G K AA + + L ++T AP +QFY+ N++ G +G Y G+ Sbjct: 249 LLQA--KGDGKKVAAHVWSADEKLQLKVYTTAPALQFYSGNFLGGTPSRGTEPYADWQGL 306 Query: 245 CLETQGFPNAINQTNF--PSVVVQPGAKYKHTMLFEFSA 135 LE++ P++ N + P ++PG +Y ++F A Sbjct: 307 ALESEFLPDSPNHPEWPQPDCFLRPGEEYSSLTEYQFIA 345
>GALM_HAEIN (P31765) Aldose 1-epimerase (EC 5.1.3.3) (Mutarotase)| Length = 340 Score = 63.9 bits (154), Expect = 3e-10 Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 8/158 (5%) Frame = -2 Query: 590 DHSIQIWAKHITPVNENTIPTGEIMSVQDTPFDFTTEHRI------GDRINDVPGGYDHN 429 +H++++ A PV+ IP + V +T FDF I GD+ GYDH+ Sbjct: 188 EHTLRLNADFYLPVDNEGIPNSPLKHVVNTSFDFRIAKPIKQDFLQGDQ--QATKGYDHS 245 Query: 428 YVLDSGDEKNGLKHAAKLKDSSSSRTLDLWTDAPGMQFYTANYVNGITGKGGAVYGKHAG 249 ++++ K K L + +L++ T +Q YT NY+ G + G +Y +G Sbjct: 246 FIVN----KAWQKPCVLLTSPTGDLSLEVRTSQAALQVYTGNYLAGTPTRNGELYADFSG 301 Query: 248 VCLETQGFPNAINQTNFPSV--VVQPGAKYKHTMLFEF 141 + LETQ P+ N + + + + G +Y F+F Sbjct: 302 IALETQCLPDTPNHPEWQNYGGIQKAGGRYYQWTEFKF 339
>GALM_STRTR (P21955) Aldose 1-epimerase (EC 5.1.3.3) (Mutarotase)| Length = 348 Score = 56.6 bits (135), Expect = 5e-08 Identities = 33/152 (21%), Positives = 74/152 (48%), Gaps = 3/152 (1%) Frame = -2 Query: 587 HSIQIWAKHITPVNENTIPTGEIMSVQDTPFDFTTEHRIGDRINDVPGGYDHNYVLDSGD 408 H +QI++ + ++ IPTG+ ++V +T +DF + RI + G+D +V+ G Sbjct: 194 HELQIYSDYRLELDSELIPTGQKINVDETNYDFRKTTDLLPRI-EANNGFDDAFVV-GGG 251 Query: 407 EKNGLKHAAKLKDSSSSRTLDLWTDAPGMQFYTANYVNG---ITGKGGAVYGKHAGVCLE 237 + +K A L D S ++++++ G+ +T + + G + + + +E Sbjct: 252 TCDHVKEVAILHDKESGDGIEIFSNRNGLVIFTMDDIEDNIYFARDKGKMAKRREAIAME 311 Query: 236 TQGFPNAINQTNFPSVVVQPGAKYKHTMLFEF 141 Q P+A+N F +++ G + + F++ Sbjct: 312 AQTLPDAVNHKGFGDIILDKGHSVNYEIGFQY 343
>GAL10_KLULA (P09609) GAL10 bifunctional protein [Includes: UDP-glucose| 4-epimerase (EC 5.1.3.2) (Galactowaldenase); Aldose 1-epimerase (EC 5.1.3.3) (Mutarotase)] Length = 688 Score = 45.1 bits (105), Expect = 2e-04 Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 9/146 (6%) Frame = -2 Query: 551 VNENTIPTG------EIMSVQDTPFDFTTEHRIGDR--INDVPGGYDHNYVLDSGDEKNG 396 VN +PTG ++ + D+P + T + + D ++ +P D + Sbjct: 553 VNNKLLPTGNLKKYTQVATFNDSPTEITEKEPVLDFCFVSGLPAKLD--------TRSSP 604 Query: 395 LKHAAKLKDSSSSRTLDLWTDAPGMQFYTANYVNGITGKGGAVYGKHAGVCLETQGFPNA 216 L KL + + +++ T P Q YT +YV+ + K Y AG+C E + +A Sbjct: 605 LTPVFKLSNEDAKLEVEVATTEPTFQVYTGDYVD-VKDK----YENRAGICCEPGRYIDA 659 Query: 215 INQTNFPSVVVQP-GAKYKHTMLFEF 141 +N + S VV P G Y H + + F Sbjct: 660 VNNPEWKSSVVLPAGETYGHKLSYTF 685
>GAL10_SCHPO (Q9HDU3) GAL10 bifunctional protein [Includes: UDP-glucose| 4-epimerase (EC 5.1.3.2) (Galactowaldenase); Aldose 1-epimerase (EC 5.1.3.3) (Mutarotase)] Length = 713 Score = 37.0 bits (84), Expect = 0.043 Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 8/136 (5%) Frame = -2 Query: 548 NENTIPTGEIMSVQDTPFDFTTEHRIGDRINDVPGGYDHNYVLDS-------GDEKNGLK 390 +E ++PTG+I+ Q+ D T ++ I+ +D+ +++D K LK Sbjct: 561 SETSLPTGDIVEWQN---DITKPTKLDPNIS-----FDNCFIVDREASKFCLDTRKYSLK 612 Query: 389 HAAKLKDSSSSRTLDLWTDAPGMQFYTANYVNGITGKGGAVYGKHAGVCLETQGFPNAIN 210 + ++ S L + T P Q YT + G + +G C+ET F NA+N Sbjct: 613 NIVEVIHPSVPVKLVVSTTEPAFQLYTGD------GNDICEFQSRSGFCVETGRFINALN 666 Query: 209 QTNF-PSVVVQPGAKY 165 + V+++ G Y Sbjct: 667 NEKWSKQVILRKGEVY 682
>FMT_BUCAI (P57564) Methionyl-tRNA formyltransferase (EC 2.1.2.9)| Length = 314 Score = 31.2 bits (69), Expect = 2.4 Identities = 11/38 (28%), Positives = 19/38 (50%) Frame = -2 Query: 584 SIQIWAKHITPVNENTIPTGEIMSVQDTPFDFTTEHRI 471 +I++W + P+ +N GEI+S T H+I Sbjct: 244 NIKVWQSEVIPITQNNRSVGEIISYNKNGIQINTSHQI 281
>RPOB_BACTN (Q8A469) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1270 Score = 30.4 bits (67), Expect = 4.0 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = -2 Query: 425 VLDSGDEKNGLKHAAKLKDSSSSRTLDLWTDAPGMQFYTANYV-NGITGK 279 VL + G+K A + D ++ LD WTD G+ Y Y+ +G TG+ Sbjct: 1100 VLGRAGKTLGVKFATPIFDGATMDDLDQWTDKAGLPRYCKTYLCDGGTGE 1149
>SYR_MYCSM (Q9X5M0) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA| ligase) (ArgRS) Length = 550 Score = 30.4 bits (67), Expect = 4.0 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 4/55 (7%) Frame = -2 Query: 527 GEIMSVQDTPFDFTTEHRIGDRINDVPGGYDHNY----VLDSGDEKNGLKHAAKL 375 GE V T HR+ + D+ G Y Y VL GDE+ G H+A+L Sbjct: 471 GEFPRVLKTAASLREPHRVCRYLEDLAGDYHRFYDSCRVLPQGDEEPGDLHSARL 525
>IRF8_MOUSE (P23611) Interferon regulatory factor 8 (IRF-8) (Interferon| consensus sequence-binding protein) (ICSBP) Length = 424 Score = 30.0 bits (66), Expect = 5.3 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%) Frame = -1 Query: 285 GQRRSCLREACRSMLGNPGVPQCHQPDQF-PVC 190 GQ + E CR L PG+P+ + PD PVC Sbjct: 217 GQATTTCLEGCRLSLSQPGLPKLYGPDGLEPVC 249
>GUX1_PHACH (P13860) Exoglucanase 1 precursor (EC 3.2.1.91) (Exoglucanase I)| (Exocellobiohydrolase I) (1,4-beta-cellobiohydrolase) Length = 516 Score = 30.0 bits (66), Expect = 5.3 Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 1/92 (1%) Frame = -2 Query: 437 DHNYVLDSGDEKNGLKHAAKLKDSSSSRTLDLWTD-APGMQFYTANYVNGITGKGGAVYG 261 D NY G GLK + + L +W D A M + +NY T K + G Sbjct: 354 DTNYFAQHG----GLKQVGEALRTGMVLALSIWDDYAANMLWLDSNYP---TNKDPSTPG 406 Query: 260 KHAGVCLETQGFPNAINQTNFPSVVVQPGAKY 165 G C T G P I + + VV K+ Sbjct: 407 VARGTCATTSGVPAQIEAQSPNAYVVFSNIKF 438
>COFG_HALMA (Q5UXN0) FO synthase subunit 1 (EC 2.5.1.-)| (7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit 1) Length = 343 Score = 29.6 bits (65), Expect = 6.9 Identities = 14/41 (34%), Positives = 19/41 (46%) Frame = -1 Query: 324 HAVLYRQLCEWHHGQRRSCLREACRSMLGNPGVPQCHQPDQ 202 + ++ QL EW H LREAC L +P + DQ Sbjct: 76 YTAVHDQLAEWGHDSIHEYLREACEIALEEGLLPHANPGDQ 116
>COAT_TYLCA (P36278) Coat protein (CP)| Length = 256 Score = 29.3 bits (64), Expect = 9.0 Identities = 16/39 (41%), Positives = 21/39 (53%) Frame = +1 Query: 70 RFIPFYNYCSCSH*AAGIISNHAENSNNMVCLYFAPGCT 186 RF YN+C+ +H A NH EN+ + LY A CT Sbjct: 201 RFYKIYNHCTYNHQEAAKYENHTENA---LLLYMA--CT 234 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,933,191 Number of Sequences: 219361 Number of extensions: 2166383 Number of successful extensions: 6401 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 6181 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6376 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5216272880 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
