ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags1a02 |
|---|---|
| Clone Library Name | barley_pub |
>VGLB_HHV2H (P08666) Glycoprotein B precursor| Length = 904 Score = 32.0 bits (71), Expect = 1.4 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%) Frame = +2 Query: 161 ATSGPAPASDSGPKAAGGFTAFLDFD----LDPPCTKVPSTTCTVLAATNAPPRTPPMT 325 A + APA+ + P+A+GG A + + PP P+TT T PP+ P T Sbjct: 18 AVASAAPAAPAAPRASGGVAATVAANGGPASRPPPVPSPATTKARKRKTKKPPKRPEAT 76
>VGLB_HHV23 (P06763) Glycoprotein B precursor| Length = 904 Score = 32.0 bits (71), Expect = 1.4 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%) Frame = +2 Query: 161 ATSGPAPASDSGPKAAGGFTAFLDFD----LDPPCTKVPSTTCTVLAATNAPPRTPPMT 325 A + APA+ + P+A+GG A + + PP P+TT T PP+ P T Sbjct: 18 AVASAAPAAPAAPRASGGVAATVAANGGPASRPPPVPSPATTKARKRKTKKPPKRPEAT 76
>NEDD4_HUMAN (P46934) E3 ubiquitin-protein ligase NEDD4 (EC 6.3.2.-)| Length = 1000 Score = 31.6 bits (70), Expect = 1.8 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = -3 Query: 189 SLAGAGPDVASPSSGHNQNLTPPSIVTTGGWPSXWDI*HA 70 S + AGP + +S Q +T PS + G P W++ HA Sbjct: 493 SQSSAGPQSQASTSDSGQQVTQPSEIEQGFLPKGWEVRHA 532
>POLN_RUBVT (P13889) Nonstructural polyprotein [Contains: Protease (EC 3.4.22.-)| (p150); RNA-directed RNA polymerase/helicase (EC 2.7.7.48) (EC 3.6.1.-) (p90)] Length = 2115 Score = 30.8 bits (68), Expect = 3.0 Identities = 18/54 (33%), Positives = 24/54 (44%) Frame = +2 Query: 188 DSGPKAAGGFTAFLDFDLDPPCTKVPSTTCTVLAATNAPPRTPPMTCLSGLQSV 349 + G A G +AFLD +VP+ V+A APP PP + Q V Sbjct: 1579 EDGSLRAAGLSAFLDAGALAELKEVPAGIDRVVAVEQAPPPLPPADGIPEAQDV 1632
>FZD1_HUMAN (Q9UP38) Frizzled 1 precursor (Frizzled-1) (Fz-1) (hFz1) (FzE1)| Length = 647 Score = 30.8 bits (68), Expect = 3.0 Identities = 14/26 (53%), Positives = 17/26 (65%) Frame = +1 Query: 472 RVAEDGPGDGAHRREHAYRPRRLARE 549 R+AE+G GD RR PRRLAR+ Sbjct: 29 RLAEEGSGDAGGRRRPPVDPRRLARQ 54
>EMBA_MYCAV (P71485) Probable arabinosyltransferase A (EC 2.4.2.-)| Length = 1108 Score = 30.8 bits (68), Expect = 3.0 Identities = 30/101 (29%), Positives = 39/101 (38%), Gaps = 11/101 (10%) Frame = +2 Query: 80 ISQXLGHPPVVTMEGGVRFWLCPELGDA--TSGPAPASDSGPKAAGGFTAFLDFDLDPPC 253 + L PVVT G V P + + A GP G A L F LDP Sbjct: 791 VGDDLQSDPVVTKPGLVNSDASPNKPNVAYSDSAGTAGGKGPVGVNGSHAALPFGLDPAR 850 Query: 254 TKVPST---TCTVLAATNA----PPRTP--PMTCLSGLQSV 349 T V + AT+A PPRTP P+ +S ++ Sbjct: 851 TPVMGSYGENSLAATATSAWYQLPPRTPDRPLVVVSAAGAI 891
>EMBA_MYCTU (P0A560) Probable arabinosyltransferase A (EC 2.4.2.-)| Length = 1094 Score = 30.4 bits (67), Expect = 4.0 Identities = 30/101 (29%), Positives = 41/101 (40%), Gaps = 11/101 (10%) Frame = +2 Query: 80 ISQXLGHPPVVTMEGGVRFWLCPELGDA--TSGPAPASDSGPKAAGGFTAFLDFDLDPPC 253 + + L PVV+ G V P +A T A GP G A L F LDP Sbjct: 777 VGEDLKSDPVVSKPGLVNSDASPNKPNAAITDSAGTAGGKGPVGINGSHAALPFGLDPAR 836 Query: 254 TKVPST---TCTVLAATNA----PPRTP--PMTCLSGLQSV 349 T V + AT+A PPR+P P+ +S ++ Sbjct: 837 TPVMGSYGENNLAATATSAWYQLPPRSPDRPLVVVSAAGAI 877
>EMBA_MYCBO (P0A561) Probable arabinosyltransferase A (EC 2.4.2.-)| Length = 1094 Score = 30.4 bits (67), Expect = 4.0 Identities = 30/101 (29%), Positives = 41/101 (40%), Gaps = 11/101 (10%) Frame = +2 Query: 80 ISQXLGHPPVVTMEGGVRFWLCPELGDA--TSGPAPASDSGPKAAGGFTAFLDFDLDPPC 253 + + L PVV+ G V P +A T A GP G A L F LDP Sbjct: 777 VGEDLKSDPVVSKPGLVNSDASPNKPNAAITDSAGTAGGKGPVGINGSHAALPFGLDPAR 836 Query: 254 TKVPST---TCTVLAATNA----PPRTP--PMTCLSGLQSV 349 T V + AT+A PPR+P P+ +S ++ Sbjct: 837 TPVMGSYGENNLAATATSAWYQLPPRSPDRPLVVVSAAGAI 877
>POLN_RUBVM (Q86500) Nonstructural polyprotein [Contains: Protease (EC 3.4.22.-)| (p150); RNA-directed RNA polymerase/helicase (EC 2.7.7.48) (EC 3.6.1.-) (p90)] Length = 2115 Score = 30.0 bits (66), Expect = 5.2 Identities = 18/54 (33%), Positives = 24/54 (44%) Frame = +2 Query: 188 DSGPKAAGGFTAFLDFDLDPPCTKVPSTTCTVLAATNAPPRTPPMTCLSGLQSV 349 + G A G +AFLD +VP+ V+A APP PP + Q V Sbjct: 1580 EDGLLRAAGLSAFLDAGALAELKEVPAGIDRVVAVEQAPPPLPPADGIPEAQDV 1633
>SLIK3_HUMAN (O94933) SLIT and NTRK-like protein 3 precursor| Length = 977 Score = 29.6 bits (65), Expect = 6.7 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Frame = +2 Query: 74 CQISQXLGHPPVVTMEGGVRFWLCPE-LGDATSGPAPASDSGPKAAGGFTAFLDFDLDPP 250 C+ + L H V T+E V LCPE L A +G +PA G T+ ++ PP Sbjct: 591 CRSPENLTHRDVRTIELEV---LCPEMLHVAPAGESPAQPGDSHLIGAPTSASPYEFSPP 647 Query: 251 CTKVP 265 VP Sbjct: 648 GGPVP 652
>JD2AA_XENLA (Q6IRB8) JmjC domain-containing histone demethylation protein 2A-A| (EC 1.14.11.-) (Jumonji domain-containing protein 1A-A) Length = 1331 Score = 29.3 bits (64), Expect = 8.8 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 4/55 (7%) Frame = +2 Query: 179 PASDSGPKAAGGFTAFLDFDLDPPCTKVPSTTC----TVLAATNAPPRTPPMTCL 331 P S++GPK+ F AF + P S +L+ T++P PPMTC+ Sbjct: 437 PKSENGPKSENLFAAFTNSSTVFPKGFEFSVKSFPEQKMLSVTDSPKTAPPMTCV 491
>US6NL_MOUSE (Q80XC3) USP6 N-terminal-like protein| Length = 819 Score = 29.3 bits (64), Expect = 8.8 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = -3 Query: 477 HPADHPPSYNNPSIYEG 427 H A +PPSY+NP +Y G Sbjct: 613 HRAAYPPSYSNPPVYHG 629 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,735,688 Number of Sequences: 219361 Number of extensions: 1801018 Number of successful extensions: 5717 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 5373 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5709 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5101629520 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
