ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags1a02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY105136.1| Zea mays PCO114928 mRNA sequence 143 7e-31
2ref|XM_474409.1| Oryza sativa (japonica cultivar-group), predic... 107 4e-20
3dbj|AK099749.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 4e-20
4dbj|AK100309.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 4e-20
5dbj|AK060880.1| Oryza sativa (japonica cultivar-group) cDNA clon... 107 4e-20
6dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 86 2e-13
7emb|AL732345.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 86 2e-13
8emb|AL606651.3|OSJN00092 Oryza sativa genomic DNA, chromosome 4,... 86 2e-13
9gb|AC108359.4| Homo sapiens chromosome X clone RP11-467P22, comp... 42 2.0
10ref|NM_188124.1| Oryza sativa (japonica cultivar-group), Ozsa855... 40 8.0
11ref|XM_588946.2| PREDICTED: Bos taurus hypothetical LOC511583 (L... 40 8.0
12gb|AC114637.9| Mus musculus chromosome 3, clone RP24-119G15, com... 40 8.0
13gb|AE008999.1| Agrobacterium tumefaciens str. C58 circular chrom... 40 8.0
14gb|DQ334055.1| Drosophila miranda CG10236 gene, partial cds 40 8.0
15emb|AL161742.7| Human DNA sequence from clone RP4-597J3 on chrom... 40 8.0
16gb|AC091158.11| Mus musculus Strain C57BL6/J chromosome 6 BAC, R... 40 8.0
17emb|BX294133.1| Pirellula sp. strain 1 complete genome; segment ... 40 8.0
18emb|AL162758.2|NMA7Z2491 Neisseria meningitidis serogroup A stra... 40 8.0
19dbj|BA000037.2| Vibrio vulnificus YJ016 DNA, chromosome I, compl... 40 8.0
20gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome 40 8.0
21gb|AC119995.22| Mus musculus chromosome 3, clone RP24-120B18, co... 40 8.0
22gb|AE002098.2| Neisseria meningitidis MC58, complete genome 40 8.0
23dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
24dbj|AP000815.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.0
25dbj|AK109947.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.0
26gb|AF161263.1|AF161263 Pseudomonas aeruginosa chlorocatechol-1,2... 40 8.0
27gb|AC123027.4| Mus musculus BAC clone RP24-550H11 from 3, comple... 40 8.0
28gb|AC162924.5| Mus musculus BAC clone RP23-292J21 from chromosom... 40 8.0
29emb|AL691485.9| Mouse DNA sequence from clone RP23-26D14 on chro... 40 8.0 
>gb|AY105136.1| Zea mays PCO114928 mRNA sequence
          Length = 806

 Score =  143 bits (72), Expect = 7e-31
 Identities = 105/116 (90%)
 Strand = Plus / Minus

                                                                       
Query: 470 gccgggtggcggaggacggccctggagacggagcccatcgccgagagcacgcataccgcc 529
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 335 gccgggtggcggaggacggccctggagacggagcccatcgccgagagcacgcacaccgcc 276

                                                                   
Query: 530 ctcggcgactggctcgcgaatgccgcgatcttccccgcgacatcctctgaaggaga 585
           || | ||||||| | ||||| ||  |||||||| |||| || ||||||||||||||
Sbjct: 275 cttgacgactgggtggcgaacgcgacgatcttcgccgccacgtcctctgaaggaga 220



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                               
Query: 305 cccagaacgcctccaatgacatgcctctccgggctgcagagcgtgacgctga 356
           |||| ||| ||||| || |||| |||||| ||||||||||||||||||||||
Sbjct: 554 cccaaaacacctccgatcacattcctctcagggctgcagagcgtgacgctga 503
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>ref|XM_474409.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1071

 Score =  107 bits (54), Expect = 4e-20
 Identities = 120/142 (84%)
 Strand = Plus / Minus

                                                                       
Query: 213 gtttcacggctttcttggactttgatttggaccctccttgcacaaaagtccctagcacca 272
           ||||| |||| ||||| ||||| |  || |||||||| ||||| ||| |||| || ||||
Sbjct: 874 gtttcccggccttcttcgacttgggcttcgaccctccctgcacgaaactcccaagtacca 815

                                                                       
Query: 273 cctgcacagtactggcagctaccaatgcgccacccagaacgcctccaatgacatgcctct 332
           |||| || || ||||||||||||||||| || || |||||||||||||||| ||||||||
Sbjct: 814 cctgaacggtgctggcagctaccaatgctccgccgagaacgcctccaatgatatgcctct 755

                                 
Query: 333 ccgggctgcagagcgtgacgct 354
           | |||||||| ||||| |||||
Sbjct: 754 cggggctgcacagcgtcacgct 733



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 100/117 (85%)
 Strand = Plus / Minus

                                                                       
Query: 470 gccgggtggcggaggacggccctggagacggagcccatcgccgagagcacgcataccgcc 529
           |||||||||||||||||  ||| ||||||||||||  | |||||||||||||| ||||||
Sbjct: 602 gccgggtggcggaggaccacccgggagacggagccggtggccgagagcacgcacaccgcc 543

                                                                    
Query: 530 ctcggcgactggctcgcgaatgccgcgatcttccccgcgacatcctctgaaggagat 586
           || | ||| ||| | ||||| ||| |||||||||| || || |||||||||||||||
Sbjct: 542 ctggacgaatggttggcgaacgccacgatcttccctgcaacgtcctctgaaggagat 486



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 100/118 (84%), Gaps = 4/118 (3%)
 Strand = Plus / Minus

                                                                        
Query: 48   gttgatatcaatattggagcttcgcgtgtcaaatatcccagnagctaggccatcctcccg 107
            |||||||||||| ||||| |||| ||||||||||||||| | |||||||||| |||||||
Sbjct: 1056 gttgatatcaatgttggaacttctcgtgtcaaatatccc-ggagctaggccaccctcccg 998

                                                                      
Query: 108  tcgtt---acaatggagggcggcgttaggttttggttatgtcctgagctgggtgacgc 162
            |||||   |||  ||  ||||||||||| ||||||||||| || ||||| || |||||
Sbjct: 997  tcgttgttacagggggcggcggcgttagattttggttatggccggagctcggcgacgc 940
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>dbj|AK099749.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091P17, full
            insert sequence
          Length = 2890

 Score =  107 bits (54), Expect = 4e-20
 Identities = 120/142 (84%)
 Strand = Plus / Minus

                                                                        
Query: 213  gtttcacggctttcttggactttgatttggaccctccttgcacaaaagtccctagcacca 272
            ||||| |||| ||||| ||||| |  || |||||||| ||||| ||| |||| || ||||
Sbjct: 2541 gtttcccggccttcttcgacttgggcttcgaccctccctgcacgaaactcccaagtacca 2482

                                                                        
Query: 273  cctgcacagtactggcagctaccaatgcgccacccagaacgcctccaatgacatgcctct 332
            |||| || || ||||||||||||||||| || || |||||||||||||||| ||||||||
Sbjct: 2481 cctgaacggtgctggcagctaccaatgctccgccgagaacgcctccaatgatatgcctct 2422

                                  
Query: 333  ccgggctgcagagcgtgacgct 354
            | |||||||| ||||| |||||
Sbjct: 2421 cggggctgcacagcgtcacgct 2400



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 100/117 (85%)
 Strand = Plus / Minus

                                                                        
Query: 470  gccgggtggcggaggacggccctggagacggagcccatcgccgagagcacgcataccgcc 529
            |||||||||||||||||  ||| ||||||||||||  | |||||||||||||| ||||||
Sbjct: 2269 gccgggtggcggaggaccacccgggagacggagccggtggccgagagcacgcacaccgcc 2210

                                                                     
Query: 530  ctcggcgactggctcgcgaatgccgcgatcttccccgcgacatcctctgaaggagat 586
            || | ||| ||| | ||||| ||| |||||||||| || || |||||||||||||||
Sbjct: 2209 ctggacgaatggttggcgaacgccacgatcttccctgcaacgtcctctgaaggagat 2153



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 100/118 (84%), Gaps = 4/118 (3%)
 Strand = Plus / Minus

                                                                        
Query: 48   gttgatatcaatattggagcttcgcgtgtcaaatatcccagnagctaggccatcctcccg 107
            |||||||||||| ||||| |||| ||||||||||||||| | |||||||||| |||||||
Sbjct: 2723 gttgatatcaatgttggaacttctcgtgtcaaatatccc-ggagctaggccaccctcccg 2665

                                                                      
Query: 108  tcgtt---acaatggagggcggcgttaggttttggttatgtcctgagctgggtgacgc 162
            |||||   |||  ||  ||||||||||| ||||||||||| || ||||| || |||||
Sbjct: 2664 tcgttgttacagggggcggcggcgttagattttggttatggccggagctcggcgacgc 2607
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>dbj|AK100309.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023078J11, full
            insert sequence
          Length = 1869

 Score =  107 bits (54), Expect = 4e-20
 Identities = 120/142 (84%)
 Strand = Plus / Minus

                                                                        
Query: 213  gtttcacggctttcttggactttgatttggaccctccttgcacaaaagtccctagcacca 272
            ||||| |||| ||||| ||||| |  || |||||||| ||||| ||| |||| || ||||
Sbjct: 1427 gtttcccggccttcttcgacttgggcttcgaccctccctgcacgaaactcccaagtacca 1368

                                                                        
Query: 273  cctgcacagtactggcagctaccaatgcgccacccagaacgcctccaatgacatgcctct 332
            |||| || || ||||||||||||||||| || || |||||||||||||||| ||||||||
Sbjct: 1367 cctgaacggtgctggcagctaccaatgctccgccgagaacgcctccaatgatatgcctct 1308

                                  
Query: 333  ccgggctgcagagcgtgacgct 354
            | |||||||| ||||| |||||
Sbjct: 1307 cggggctgcacagcgtcacgct 1286



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 100/117 (85%)
 Strand = Plus / Minus

                                                                        
Query: 470  gccgggtggcggaggacggccctggagacggagcccatcgccgagagcacgcataccgcc 529
            |||||||||||||||||  ||| ||||||||||||  | |||||||||||||| ||||||
Sbjct: 1155 gccgggtggcggaggaccacccgggagacggagccggtggccgagagcacgcacaccgcc 1096

                                                                     
Query: 530  ctcggcgactggctcgcgaatgccgcgatcttccccgcgacatcctctgaaggagat 586
            || | ||| ||| | ||||| ||| |||||||||| || || |||||||||||||||
Sbjct: 1095 ctggacgaatggttggcgaacgccacgatcttccctgcaacgtcctctgaaggagat 1039



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 100/118 (84%), Gaps = 4/118 (3%)
 Strand = Plus / Minus

                                                                        
Query: 48   gttgatatcaatattggagcttcgcgtgtcaaatatcccagnagctaggccatcctcccg 107
            |||||||||||| ||||| |||| ||||||||||||||| | |||||||||| |||||||
Sbjct: 1609 gttgatatcaatgttggaacttctcgtgtcaaatatccc-ggagctaggccaccctcccg 1551

                                                                      
Query: 108  tcgtt---acaatggagggcggcgttaggttttggttatgtcctgagctgggtgacgc 162
            |||||   |||  ||  ||||||||||| ||||||||||| || ||||| || |||||
Sbjct: 1550 tcgttgttacagggggcggcggcgttagattttggttatggccggagctcggcgacgc 1493
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>dbj|AK060880.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-A09, full
            insert sequence
          Length = 1685

 Score =  107 bits (54), Expect = 4e-20
 Identities = 120/142 (84%)
 Strand = Plus / Minus

                                                                        
Query: 213  gtttcacggctttcttggactttgatttggaccctccttgcacaaaagtccctagcacca 272
            ||||| |||| ||||| ||||| |  || |||||||| ||||| ||| |||| || ||||
Sbjct: 1257 gtttcccggccttcttcgacttgggcttcgaccctccctgcacgaaactcccaagtacca 1198

                                                                        
Query: 273  cctgcacagtactggcagctaccaatgcgccacccagaacgcctccaatgacatgcctct 332
            |||| || || ||||||||||||||||| || || |||||||||||||||| ||||||||
Sbjct: 1197 cctgaacggtgctggcagctaccaatgctccgccgagaacgcctccaatgatatgcctct 1138

                                  
Query: 333  ccgggctgcagagcgtgacgct 354
            | |||||||| ||||| |||||
Sbjct: 1137 cggggctgcacagcgtcacgct 1116



 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 100/117 (85%)
 Strand = Plus / Minus

                                                                       
Query: 470 gccgggtggcggaggacggccctggagacggagcccatcgccgagagcacgcataccgcc 529
           |||||||||||||||||  ||| ||||||||||||  | |||||||||||||| ||||||
Sbjct: 985 gccgggtggcggaggaccacccgggagacggagccggtggccgagagcacgcacaccgcc 926

                                                                    
Query: 530 ctcggcgactggctcgcgaatgccgcgatcttccccgcgacatcctctgaaggagat 586
           || | ||| ||| | ||||| ||| |||||||||| || || |||||||||||||||
Sbjct: 925 ctggacgaatggttggcgaacgccacgatcttccctgcaacgtcctctgaaggagat 869



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 100/118 (84%), Gaps = 4/118 (3%)
 Strand = Plus / Minus

                                                                        
Query: 48   gttgatatcaatattggagcttcgcgtgtcaaatatcccagnagctaggccatcctcccg 107
            |||||||||||| ||||| |||| ||||||||||||||| | |||||||||| |||||||
Sbjct: 1439 gttgatatcaatgttggaacttctcgtgtcaaatatccc-ggagctaggccaccctcccg 1381

                                                                      
Query: 108  tcgtt---acaatggagggcggcgttaggttttggttatgtcctgagctgggtgacgc 162
            |||||   |||  ||  ||||||||||| ||||||||||| || ||||| || |||||
Sbjct: 1380 tcgttgttacagggggcggcggcgttagattttggttatggccggagctcggcgacgc 1323
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 64/71 (90%)
 Strand = Plus / Plus

                                                                            
Query: 284      ctggcagctaccaatgcgccacccagaacgcctccaatgacatgcctctccgggctgcag 343
                ||||||||||||||||| || || |||||||||||||||| ||||||||| |||||||| 
Sbjct: 34958281 ctggcagctaccaatgctccgccgagaacgcctccaatgatatgcctctcggggctgcac 34958340

                           
Query: 344      agcgtgacgct 354
                ||||| |||||
Sbjct: 34958341 agcgtcacgct 34958351



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 100/118 (84%), Gaps = 4/118 (3%)
 Strand = Plus / Plus

                                                                            
Query: 48       gttgatatcaatattggagcttcgcgtgtcaaatatcccagnagctaggccatcctcccg 107
                |||||||||||| ||||| |||| ||||||||||||||| | |||||||||| |||||||
Sbjct: 34957641 gttgatatcaatgttggaacttctcgtgtcaaatatccc-ggagctaggccaccctcccg 34957699

                                                                          
Query: 108      tcgtt---acaatggagggcggcgttaggttttggttatgtcctgagctgggtgacgc 162
                |||||   |||  ||  ||||||||||| ||||||||||| || ||||| || |||||
Sbjct: 34957700 tcgttgttacagggggcggcggcgttagattttggttatggccggagctcggcgacgc 34957757



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 81/95 (85%)
 Strand = Plus / Plus

                                                                            
Query: 470      gccgggtggcggaggacggccctggagacggagcccatcgccgagagcacgcataccgcc 529
                |||||||||||||||||  ||| ||||||||||||  | |||||||||||||| ||||||
Sbjct: 34958583 gccgggtggcggaggaccacccgggagacggagccggtggccgagagcacgcacaccgcc 34958642

                                                   
Query: 530      ctcggcgactggctcgcgaatgccgcgatcttccc 564
                || | ||| ||| | ||||| ||| ||||||||||
Sbjct: 34958643 ctggacgaatggttggcgaacgccacgatcttccc 34958677
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>emb|AL732345.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0306F12, complete
             sequence
          Length = 84361

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 64/71 (90%)
 Strand = Plus / Plus

                                                                         
Query: 284   ctggcagctaccaatgcgccacccagaacgcctccaatgacatgcctctccgggctgcag 343
             ||||||||||||||||| || || |||||||||||||||| ||||||||| |||||||| 
Sbjct: 63662 ctggcagctaccaatgctccgccgagaacgcctccaatgatatgcctctcggggctgcac 63721

                        
Query: 344   agcgtgacgct 354
             ||||| |||||
Sbjct: 63722 agcgtcacgct 63732



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 81/95 (85%)
 Strand = Plus / Plus

                                                                         
Query: 470   gccgggtggcggaggacggccctggagacggagcccatcgccgagagcacgcataccgcc 529
             |||||||||||||||||  ||| ||||||||||||  | |||||||||||||| ||||||
Sbjct: 63964 gccgggtggcggaggaccacccgggagacggagccggtggccgagagcacgcacaccgcc 64023

                                                
Query: 530   ctcggcgactggctcgcgaatgccgcgatcttccc 564
             || | ||| ||| | ||||| ||| ||||||||||
Sbjct: 64024 ctggacgaatggttggcgaacgccacgatcttccc 64058



 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 99/118 (83%), Gaps = 4/118 (3%)
 Strand = Plus / Plus

                                                                         
Query: 48    gttgatatcaatattggagcttcgcgtgtcaaatatcccagnagctaggccatcctcccg 107
             |||||||||||| ||||| |||| ||||||||||||||| | |||||||||| ||||| |
Sbjct: 63022 gttgatatcaatgttggaacttctcgtgtcaaatatccc-ggagctaggccaccctccgg 63080

                                                                       
Query: 108   tcgtt---acaatggagggcggcgttaggttttggttatgtcctgagctgggtgacgc 162
             |||||   |||  ||  ||||||||||| ||||||||||| || ||||| || |||||
Sbjct: 63081 tcgttgttacagggggcggcggcgttagattttggttatggccggagctcggcgacgc 63138
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>emb|AL606651.3|OSJN00092 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088H09,
             complete sequence
          Length = 145391

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 64/71 (90%)
 Strand = Plus / Plus

                                                                         
Query: 284   ctggcagctaccaatgcgccacccagaacgcctccaatgacatgcctctccgggctgcag 343
             ||||||||||||||||| || || |||||||||||||||| ||||||||| |||||||| 
Sbjct: 17333 ctggcagctaccaatgctccgccgagaacgcctccaatgatatgcctctcggggctgcac 17392

                        
Query: 344   agcgtgacgct 354
             ||||| |||||
Sbjct: 17393 agcgtcacgct 17403



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 100/118 (84%), Gaps = 4/118 (3%)
 Strand = Plus / Plus

                                                                         
Query: 48    gttgatatcaatattggagcttcgcgtgtcaaatatcccagnagctaggccatcctcccg 107
             |||||||||||| ||||| |||| ||||||||||||||| | |||||||||| |||||||
Sbjct: 16693 gttgatatcaatgttggaacttctcgtgtcaaatatccc-ggagctaggccaccctcccg 16751

                                                                       
Query: 108   tcgtt---acaatggagggcggcgttaggttttggttatgtcctgagctgggtgacgc 162
             |||||   |||  ||  ||||||||||| ||||||||||| || ||||| || |||||
Sbjct: 16752 tcgttgttacagggggcggcggcgttagattttggttatggccggagctcggcgacgc 16809



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 81/95 (85%)
 Strand = Plus / Plus

                                                                         
Query: 470   gccgggtggcggaggacggccctggagacggagcccatcgccgagagcacgcataccgcc 529
             |||||||||||||||||  ||| ||||||||||||  | |||||||||||||| ||||||
Sbjct: 17635 gccgggtggcggaggaccacccgggagacggagccggtggccgagagcacgcacaccgcc 17694

                                                
Query: 530   ctcggcgactggctcgcgaatgccgcgatcttccc 564
             || | ||| ||| | ||||| ||| ||||||||||
Sbjct: 17695 ctggacgaatggttggcgaacgccacgatcttccc 17729
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>gb|AC108359.4| Homo sapiens chromosome X clone RP11-467P22, complete sequence
          Length = 189224

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 130   taggttttggttatgtcctgagctg 154
             ||||||| |||||||||||||||||
Sbjct: 87565 taggtttaggttatgtcctgagctg 87541
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>ref|NM_188124.1| Oryza sativa (japonica cultivar-group), Ozsa8556 predicted mRNA
          Length = 1671

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 550 tgccgcgatcttccccgcgacatcctct 577
           ||||||| ||||||||||| ||||||||
Sbjct: 467 tgccgcgctcttccccgcgccatcctct 440
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>ref|XM_588946.2| PREDICTED: Bos taurus hypothetical LOC511583 (LOC511583), partial
            mRNA
          Length = 4029

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 324  catgcctctccgggctgcag 343
            ||||||||||||||||||||
Sbjct: 1835 catgcctctccgggctgcag 1816
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>gb|AC114637.9| Mus musculus chromosome 3, clone RP24-119G15, complete sequence
          Length = 179087

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 389    agattgtaagagccagataa 408
              ||||||||||||||||||||
Sbjct: 167318 agattgtaagagccagataa 167299
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>gb|AE008999.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 25 of
             256 of the complete sequence
          Length = 11346

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 200   aaggccgccggcggtttcac 219
             ||||||||||||||||||||
Sbjct: 10365 aaggccgccggcggtttcac 10384
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>gb|DQ334055.1| Drosophila miranda CG10236 gene, partial cds
          Length = 1008

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 487 ggccctggagacggagccca 506
           ||||||||||||||||||||
Sbjct: 549 ggccctggagacggagccca 568
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>emb|AL161742.7| Human DNA sequence from clone RP4-597J3 on chromosome 1p32.1-32.3
              Contains the 5' end of the ROR1 gene for receptor tyrosine
              kinase-like orphan receptor 1, a ribosomal protein L19
              (RPL19) pseudogene, a cofilin 1 (non-muscle) (CFL1)
              pseudogene and a CpG island, complete sequence
          Length = 114409

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 443    ggattgttgtaggaaggagg 462
              ||||||||||||||||||||
Sbjct: 105794 ggattgttgtaggaaggagg 105775
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>gb|AC091158.11| Mus musculus Strain C57BL6/J chromosome 6 BAC, RP23-109E8, Complete
             Sequence, complete sequence
          Length = 195048

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 389   agattgtaagagccagataa 408
             ||||||||||||||||||||
Sbjct: 13083 agattgtaagagccagataa 13102
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>emb|BX294133.1| Pirellula sp. strain 1 complete genome; segment 1/24
          Length = 311050

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 532    cggcgactggctcgcgaatg 551
              ||||||||||||||||||||
Sbjct: 234472 cggcgactggctcgcgaatg 234491
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>emb|AL162758.2|NMA7Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome;
             segment 7/7
          Length = 195767

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 360   catcggtttgattttgctgg 379
             ||||||||||||||||||||
Sbjct: 55735 catcggtttgattttgctgg 55754
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>dbj|BA000037.2| Vibrio vulnificus YJ016 DNA, chromosome I, complete sequence
          Length = 3354505

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 364     ggtttgattttgctggccct 383
               ||||||||||||||||||||
Sbjct: 2794404 ggtttgattttgctggccct 2794385
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>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome
          Length = 2841581

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 200    aaggccgccggcggtttcac 219
              ||||||||||||||||||||
Sbjct: 273286 aaggccgccggcggtttcac 273305
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>gb|AC119995.22| Mus musculus chromosome 3, clone RP24-120B18, complete sequence
          Length = 182140

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 389   agattgtaagagccagataa 408
             ||||||||||||||||||||
Sbjct: 12789 agattgtaagagccagataa 12770
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>gb|AE002098.2| Neisseria meningitidis MC58, complete genome
          Length = 2272360

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 360    catcggtttgattttgctgg 379
              ||||||||||||||||||||
Sbjct: 398002 catcggtttgattttgctgg 397983
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 550     tgccgcgatcttccccgcgacatcctct 577
               ||||||| ||||||||||| ||||||||
Sbjct: 9894904 tgccgcgctcttccccgcgccatcctct 9894931
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>dbj|AP000815.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
             clone:P0003H10
          Length = 142418

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 550   tgccgcgatcttccccgcgacatcctct 577
             ||||||| ||||||||||| ||||||||
Sbjct: 30670 tgccgcgctcttccccgcgccatcctct 30697
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>dbj|AK109947.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-159-A01, full
            insert sequence
          Length = 2870

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 161  gccacgtctggcccagcgcc 180
            ||||||||||||||||||||
Sbjct: 2490 gccacgtctggcccagcgcc 2471
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>gb|AF161263.1|AF161263 Pseudomonas aeruginosa chlorocatechol-1,2-dioxygenase (clcA),
           chloromuconate cycloisomerase (clcB), and dienelactone
           hydrolase (clcD) genes, complete cds; and unknown gene
          Length = 4661

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 174 cagcgccggcgagcgactcg 193
           ||||||||||||||||||||
Sbjct: 753 cagcgccggcgagcgactcg 734
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>gb|AC123027.4| Mus musculus BAC clone RP24-550H11 from 3, complete sequence
          Length = 191211

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 389    agattgtaagagccagataa 408
              ||||||||||||||||||||
Sbjct: 154697 agattgtaagagccagataa 154716
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>gb|AC162924.5| Mus musculus BAC clone RP23-292J21 from chromosome 6, complete sequence
          Length = 179209

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 389   agattgtaagagccagataa 408
             ||||||||||||||||||||
Sbjct: 81104 agattgtaagagccagataa 81123
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>emb|AL691485.9| Mouse DNA sequence from clone RP23-26D14 on chromosome 3, complete
             sequence
          Length = 67491

 Score = 40.1 bits (20), Expect = 8.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 389   agattgtaagagccagataa 408
             ||||||||||||||||||||
Sbjct: 61260 agattgtaagagccagataa 61279


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,486,609
Number of Sequences: 3902068
Number of extensions: 3486609
Number of successful extensions: 59839
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59677
Number of HSP's gapped (non-prelim): 156
length of query: 587
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 564
effective length of database: 17,143,297,704
effective search space: 9668819905056
effective search space used: 9668819905056
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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