Clone Information

BLAST Search Result

Clone Name	rbah60p10
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_464580.1\| Oryza sativa (japonica cultivar-group), mRNA	143	8e-31
2	dbj\|AK121183.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	143	8e-31
3	emb\|AJ575233.1\|OSA575233 Oryza sativa (japonica cultivar-group) ...	125	2e-25
4	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	92	3e-15
5	dbj\|AP003977.3\| Oryza sativa (japonica cultivar-group) genomic D...	92	3e-15
6	dbj\|AP003974.3\| Oryza sativa (japonica cultivar-group) genomic D...	92	3e-15
7	gb\|AY104782.1\| Zea mays PCO068830 mRNA sequence	70	1e-08
8	gb\|BT016495.1\| Zea mays clone Contig328 mRNA sequence	62	2e-06
9	ref\|XM_676129.1\| Aspergillus nidulans FGSC A4 hypothetical prote...	42	2.2
10	emb\|AL021919.4\|HS1045J21 Human DNA sequence from clone RP5-1045J...	42	2.2
11	gb\|AF231708.1\|AF231708 Oncorhynchus mykiss vitelline envelope pr...	42	2.2
12	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.2
13	dbj\|AP003750.3\| Oryza sativa (japonica cultivar-group) genomic D...	42	2.2
14	ref\|XM_632069.1\| Dictyostelium discoideum hypothetical protein (...	40	8.7
15	gb\|BC058057.1\| Danio rerio mediator of RNA polymerase II transcr...	40	8.7
16	gb\|AC159404.1\| Trypanosoma brucei chromosome 8 clone RPCI93-10K1...	40	8.7
17	ref\|NM_214766.1\| Danio rerio mediator of RNA polymerase II trans...	40	8.7
18	gb\|CP000067.1\| Trypanosoma brucei chromosome 4, complete sequence	40	8.7
19	gb\|AC120535.5\| Oryza sativa (japonica cultivar-group) chromosome...	40	8.7
20	gb\|AC079815.9\| Trypanosoma brucei chromosome 4 clone RPCI93-3M17...	40	8.7
21	gb\|CP000071.1\| Trypanosoma brucei chromosome 8, complete sequence	40	8.7
22	gb\|BC074468.1\| Xenopus laevis MGC84763 protein, mRNA (cDNA clone...	40	8.7
23	gb\|AC138004.3\| Oryza sativa chromosome 3 BAC OSJNBb0023J24 genom...	40	8.7
24	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	40	8.7
25	gb\|AC162936.3\| Mus musculus BAC clone RP23-108K5 from chromosome...	40	8.7
26	gb\|AC123860.4\| Mus musculus BAC clone RP23-349N13 from chromosom...	40	8.7
27	gb\|AC122903.4\| Mus musculus BAC clone RP23-44N5 from chromosome ...	40	8.7
28	emb\|CR391904.14\| Zebrafish DNA sequence from clone DKEY-165J6 in...	40	8.7
29	gb\|AC121985.3\| Mus musculus BAC clone RP24-293C3 from chromosome...	40	8.7
30	gb\|AC015983.7\| Homo sapiens BAC clone RP11-560I19 from 7, comple...	40	8.7
31	gb\|AC101811.3\| Mus musculus chromosome 19, clone RP24-295O9, com...	40	8.7
32	gb\|AC109280.9\| Mus musculus chromosome 18, clone RP23-400B7, com...	40	8.7
33	gb\|AC162444.2\| Mus musculus chromosome 19, clone RP24-75M1, comp...	40	8.7
34	emb\|AL451048.13\| Human DNA sequence from clone RP11-298A8 on chr...	40	8.7
35	emb\|AL136169.6\| Human DNA sequence from clone RP4-809E13 on chro...	40	8.7
36	gb\|AC096310.9\| Rattus norvegicus 1 BAC CH230-121B19 (Children's ...	40	8.7
37	emb\|AL844147.9\| Mouse DNA sequence from clone RP23-145N4 on chro...	40	8.7
38	emb\|AL731726.11\| Mouse DNA sequence from clone RP23-97P13 on chr...	40	8.7
39	gb\|AC117392.4\| Homo sapiens 3 BAC RP11-6F2 (Roswell Park Cancer ...	40	8.7
40	gb\|AC110025.4\| Homo sapiens chromosome 8, clone CTD-2294G15, com...	40	8.7
41	gb\|AC069359.5\| Homo sapiens chromosome 8, clone CTD-2003P13, com...	40	8.7
42	gb\|AC010321.8\| Homo sapiens chromosome 16 clone CTD-2540M10, com...	40	8.7
43	gb\|AC161538.7\| Mus musculus 6 BAC RP23-1D15 (Roswell Park Cancer...	40	8.7
44	gb\|AC160148.7\| Mus musculus 6 BAC RP23-384N6 (Roswell Park Cance...	40	8.7
45	gb\|AC093179.1\| Homo sapiens chromosome 3 clone RP11-983J7 map 3p...	40	8.7
46	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.7
47	gb\|AC157911.5\| Mus musculus chromosome 19, clone RP24-192F3, com...	40	8.7
48	gb\|AC008938.9\| Homo sapiens chromosome 16 clone CTD-2313J23, com...	40	8.7
49	gb\|AC019330.3\| Homo sapiens BAC clone RP11-81N16 from 2, complet...	40	8.7
50	gb\|AC090937.2\| Homo sapiens chromosome 3 clone RP11-316A10 map 3...	40	8.7
51	gb\|AC161879.5\| Mus musculus BAC clone RP23-264A15 from chromosom...	40	8.7
52	gb\|AC140217.3\| Mus musculus BAC clone RP23-279O5 from 8, complet...	40	8.7
53	emb\|CT025570.7\| Mouse DNA sequence from clone RP24-82O4 on chrom...	40	8.7
54	dbj\|BA000021.3\| Wigglesworthia glossinidia endosymbiont of Gloss...	40	8.7
55	emb\|AL805951.6\| Mouse DNA sequence from clone RP23-326P3 on chro...	40	8.7
56	emb\|AL732538.6\| Mouse DNA sequence from clone RP23-242O9 on chro...	40	8.7

>ref|XM_464580.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2963

 Score =  143 bits (72), Expect = 8e-31
 Identities = 209/254 (82%), Gaps = 3/254 (1%)
 Strand = Plus / Minus

                                                                        
Query: 306  ttacccaaaaggatttccaccgacagcaccatatgaaggtggggtgcttggctgggagta 365
            |||||||||||||||||| || ||||  ||||| |||||||||||||||||||||| |||
Sbjct: 2418 ttacccaaaaggatttcccccaacagagccataggaaggtggggtgcttggctgggggta 2359

                                                                        
Query: 366  cctaggggtagcttgttgatcatatccgacgccgagggaaccagcccctccttgttgcct 425
            ||| || | ||||||||||||| | || | |  |||||||||    |||||||||||| |
Sbjct: 2358 cctgggagcagcttgttgatcaaagcccatgttgagggaacccaaacctccttgttgcat 2299

                                                                        
Query: 426  tggaagcatgccattaggtagctgctcaggcatgttgtttgaaacatgctgcatcatgta 485
            ||||||||||  |||||||| |||||||| ||   |||||| ||| ||||||||||||||
Sbjct: 2298 tggaagcatggtattaggtaactgctcagaca---tgtttggaacttgctgcatcatgta 2242

                                                                        
Query: 486  atggttttgatgtacaggtggctgaatcatctgctgaggctgctgaggtggaactccaaa 545
            ||| ||| || || |||||| |||   || ||||||||| ||||| ||  | ||||||||
Sbjct: 2241 atgatttggaggtgcaggtgactggtacagctgctgaggttgctgtggaaggactccaaa 2182

                          
Query: 546  actagagttaccaa 559
            ||| ||| ||||||
Sbjct: 2181 actcgaggtaccaa 2168

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>dbj|AK121183.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023084M01, full
            insert sequence
          Length = 2961

 Score =  143 bits (72), Expect = 8e-31
 Identities = 209/254 (82%), Gaps = 3/254 (1%)
 Strand = Plus / Minus

                                                                        
Query: 306  ttacccaaaaggatttccaccgacagcaccatatgaaggtggggtgcttggctgggagta 365
            |||||||||||||||||| || ||||  ||||| |||||||||||||||||||||| |||
Sbjct: 2416 ttacccaaaaggatttcccccaacagagccataggaaggtggggtgcttggctgggggta 2357

                                                                        
Query: 366  cctaggggtagcttgttgatcatatccgacgccgagggaaccagcccctccttgttgcct 425
            ||| || | ||||||||||||| | || | |  |||||||||    |||||||||||| |
Sbjct: 2356 cctgggagcagcttgttgatcaaagcccatgttgagggaacccaaacctccttgttgcat 2297

                                                                        
Query: 426  tggaagcatgccattaggtagctgctcaggcatgttgtttgaaacatgctgcatcatgta 485
            ||||||||||  |||||||| |||||||| ||   |||||| ||| ||||||||||||||
Sbjct: 2296 tggaagcatggtattaggtaactgctcagaca---tgtttggaacttgctgcatcatgta 2240

                                                                        
Query: 486  atggttttgatgtacaggtggctgaatcatctgctgaggctgctgaggtggaactccaaa 545
            ||| ||| || || |||||| |||   || ||||||||| ||||| ||  | ||||||||
Sbjct: 2239 atgatttggaggtgcaggtgactggtacagctgctgaggttgctgtggaaggactccaaa 2180

                          
Query: 546  actagagttaccaa 559
            ||| ||| ||||||
Sbjct: 2179 actcgaggtaccaa 2166

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>emb|AJ575233.1|OSA575233 Oryza sativa (japonica cultivar-group) partial mRNA for ZIGA2
           protein
          Length = 390

 Score =  125 bits (63), Expect = 2e-25
 Identities = 200/245 (81%), Gaps = 3/245 (1%)
 Strand = Plus / Minus

                                                                       
Query: 315 aggatttccaccgacagcaccatatgaaggtggggtgcttggctgggagtacctaggggt 374
           ||||||||| || ||||  ||||| |||||||||||||||||||||| |||||| || | 
Sbjct: 390 aggatttcccccaacagagccataggaaggtggggtgcttggctgggggtacctgggagc 331

                                                                       
Query: 375 agcttgttgatcatatccgacgccgagggaaccagcccctccttgttgccttggaagcat 434
           ||||||||||||| | || | |  |||||||||    |||||||||||| ||||||||||
Sbjct: 330 agcttgttgatcaaagcccatgttgagggaacccaaacctccttgttgcattggaagcat 271

                                                                       
Query: 435 gccattaggtagctgctcaggcatgttgtttgaaacatgctgcatcatgtaatggttttg 494
           |  |||||||| |||||||| ||   |||||| ||| ||||||||||||||||| ||| |
Sbjct: 270 ggtattaggtaactgctcagaca---tgtttggaacttgctgcatcatgtaatgatttgg 214

                                                                       
Query: 495 atgtacaggtggctgaatcatctgctgaggctgctgaggtggaactccaaaactagagtt 554
           | || |||||| |||   || ||||||||| ||||| ||  | ||||||||||| ||| |
Sbjct: 213 aggtgcaggtgactggtacagctgctgaggttgctgtggaaggactccaaaactcgaggt 154

                
Query: 555 accaa 559
           |||||
Sbjct: 153 accaa 149

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 73/82 (89%)
 Strand = Plus / Minus

                                                                           
Query: 306     ttacccaaaaggatttccaccgacagcaccatatgaaggtggggtgcttggctgggagta 365
               |||||||||||||||||| || ||||  ||||| |||||||||||||||||||||| |||
Sbjct: 6117264 ttacccaaaaggatttcccccaacagagccataggaaggtggggtgcttggctgggggta 6117205

                                     
Query: 366     cctaggggtagcttgttgatca 387
               ||| || | |||||||||||||
Sbjct: 6117204 cctgggagcagcttgttgatca 6117183



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 55/64 (85%), Gaps = 3/64 (4%)
 Strand = Plus / Minus

                                                                           
Query: 425     ttggaagcatgccattaggtagctgctcaggcatgttgtttgaaacatgctgcatcatgt 484
               |||||||||||  |||||||| |||||||| ||   |||||| ||| |||||||||||||
Sbjct: 6116647 ttggaagcatggtattaggtaactgctcagaca---tgtttggaacttgctgcatcatgt 6116591

                   
Query: 485     aatg 488
               ||||
Sbjct: 6116590 aatg 6116587



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 586     gatgctcccagtggtccagatagg 609
               ||||||||||||||||||| ||||
Sbjct: 6116403 gatgctcccagtggtccaggtagg 6116380

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>dbj|AP003977.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1006_A02
          Length = 175153

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 73/82 (89%)
 Strand = Plus / Minus

                                                                         
Query: 306   ttacccaaaaggatttccaccgacagcaccatatgaaggtggggtgcttggctgggagta 365
             |||||||||||||||||| || ||||  ||||| |||||||||||||||||||||| |||
Sbjct: 82746 ttacccaaaaggatttcccccaacagagccataggaaggtggggtgcttggctgggggta 82687

                                   
Query: 366   cctaggggtagcttgttgatca 387
             ||| || | |||||||||||||
Sbjct: 82686 cctgggagcagcttgttgatca 82665



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 55/64 (85%), Gaps = 3/64 (4%)
 Strand = Plus / Minus

                                                                         
Query: 425   ttggaagcatgccattaggtagctgctcaggcatgttgtttgaaacatgctgcatcatgt 484
             |||||||||||  |||||||| |||||||| ||   |||||| ||| |||||||||||||
Sbjct: 82129 ttggaagcatggtattaggtaactgctcagaca---tgtttggaacttgctgcatcatgt 82073

                 
Query: 485   aatg 488
             ||||
Sbjct: 82072 aatg 82069



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 586   gatgctcccagtggtccagatagg 609
             ||||||||||||||||||| ||||
Sbjct: 81885 gatgctcccagtggtccaggtagg 81862

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>dbj|AP003974.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1003_F05
          Length = 147472

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 73/82 (89%)
 Strand = Plus / Minus

                                                                          
Query: 306    ttacccaaaaggatttccaccgacagcaccatatgaaggtggggtgcttggctgggagta 365
              |||||||||||||||||| || ||||  ||||| |||||||||||||||||||||| |||
Sbjct: 138103 ttacccaaaaggatttcccccaacagagccataggaaggtggggtgcttggctgggggta 138044

                                    
Query: 366    cctaggggtagcttgttgatca 387
              ||| || | |||||||||||||
Sbjct: 138043 cctgggagcagcttgttgatca 138022



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 55/64 (85%), Gaps = 3/64 (4%)
 Strand = Plus / Minus

                                                                          
Query: 425    ttggaagcatgccattaggtagctgctcaggcatgttgtttgaaacatgctgcatcatgt 484
              |||||||||||  |||||||| |||||||| ||   |||||| ||| |||||||||||||
Sbjct: 137486 ttggaagcatggtattaggtaactgctcagaca---tgtttggaacttgctgcatcatgt 137430

                  
Query: 485    aatg 488
              ||||
Sbjct: 137429 aatg 137426



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 586    gatgctcccagtggtccagatagg 609
              ||||||||||||||||||| ||||
Sbjct: 137242 gatgctcccagtggtccaggtagg 137219

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>gb|AY104782.1| Zea mays PCO068830 mRNA sequence
          Length = 923

 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 95/115 (82%)
 Strand = Plus / Minus

                                                                       
Query: 520 tgaggctgctgaggtggaactccaaaactagagttaccaactaatgttgggttagcagcg 579
           ||||||||||| || ||||| |||||||||||||| | || ||| ||| ||  ||| | |
Sbjct: 452 tgaggctgctgtggaggaacaccaaaactagagttgctaattaaggtttggggagctggg 393

                                                                  
Query: 580 cctgctgatgctcccagtggtccagataggaacatgtgagcttgaattggagctg 634
           |||||| || ||||  ||||||||||| ||  ||||||||||||| |||||||||
Sbjct: 392 cctgctaatactcctggtggtccagatgggggcatgtgagcttgagttggagctg 338

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>gb|BT016495.1| Zea mays clone Contig328 mRNA sequence
          Length = 1381

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 94/115 (81%)
 Strand = Plus / Minus

                                                                       
Query: 520 tgaggctgctgaggtggaactccaaaactagagttaccaactaatgttgggttagcagcg 579
           ||||||||||| || ||||| |||||||||||||| | || ||| ||| ||  ||| | |
Sbjct: 785 tgaggctgctgtggaggaacaccaaaactagagttgctaattaaggtttggggagctggg 726

                                                                  
Query: 580 cctgctgatgctcccagtggtccagataggaacatgtgagcttgaattggagctg 634
           |||||| || ||||  ||| ||||||| ||  ||||||||||||| |||||||||
Sbjct: 725 cctgctaatactcctggtgttccagatgggggcatgtgagcttgagttggagctg 671



 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 337 tatgaaggtggggtgcttggctgg 360
           ||||||||||||||| ||||||||
Sbjct: 932 tatgaaggtggggtgtttggctgg 909

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>ref|XM_676129.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN7952.2), mRNA
          Length = 2985

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 111  tgcttccacctcccagaccaa 131
            |||||||||||||||||||||
Sbjct: 1063 tgcttccacctcccagaccaa 1043

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>emb|AL021919.4|HS1045J21 Human DNA sequence from clone RP5-1045J21 on chromosome 1q23.3-24.3
             Contains part of the TNR gene for tenascin R (restrictin,
             janusin), a novel gene and one CpG island, complete
             sequence
          Length = 138636

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 181   atttttctccagggctttgtg 201
             |||||||||||||||||||||
Sbjct: 20262 atttttctccagggctttgtg 20282

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>gb|AF231708.1|AF231708 Oncorhynchus mykiss vitelline envelope protein gamma mRNA, complete
           cds
          Length = 1397

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 516 ctgctgaggctgctgaggtgg 536
           |||||||||||||||||||||
Sbjct: 165 ctgctgaggctgctgaggtgg 145

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 498      tacaggtggctgaatcatctg 518
                |||||||||||||||||||||
Sbjct: 24007879 tacaggtggctgaatcatctg 24007899

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>dbj|AP003750.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1174_G05
          Length = 111202

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 498   tacaggtggctgaatcatctg 518
             |||||||||||||||||||||
Sbjct: 49487 tacaggtggctgaatcatctg 49507

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>ref|XM_632069.1| Dictyostelium discoideum hypothetical protein (DDB0219237), partial
            mRNA
          Length = 4827

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 478  atcatgtaatggttttgatg 497
            ||||||||||||||||||||
Sbjct: 2415 atcatgtaatggttttgatg 2434

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>gb|BC058057.1| Danio rerio mediator of RNA polymerase II transcription, subunit 25
            homolog (yeast), mRNA (cDNA clone MGC:63555
            IMAGE:3817335), complete cds
          Length = 2737

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 516  ctgctgaggctgctgaggtggaac 539
            |||||| |||||||||||||||||
Sbjct: 1241 ctgctgtggctgctgaggtggaac 1218

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>gb|AC159404.1| Trypanosoma brucei chromosome 8 clone RPCI93-10K10, complete sequence
          Length = 182660

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 472   tgctgcatcatgtaatggtt 491
             ||||||||||||||||||||
Sbjct: 17976 tgctgcatcatgtaatggtt 17957

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>ref|NM_214766.1| Danio rerio mediator of RNA polymerase II transcription, subunit 25
            homolog (yeast) (med25), mRNA
          Length = 2737

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 516  ctgctgaggctgctgaggtggaac 539
            |||||| |||||||||||||||||
Sbjct: 1241 ctgctgtggctgctgaggtggaac 1218

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>gb|CP000067.1| Trypanosoma brucei chromosome 4, complete sequence
          Length = 1590432

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 472     tgctgcatcatgtaatggtt 491
               ||||||||||||||||||||
Sbjct: 1367952 tgctgcatcatgtaatggtt 1367933

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>gb|AC120535.5| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0092N01,
              complete sequence
          Length = 161741

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 44     cacaaatatacaagaaaata 63
              ||||||||||||||||||||
Sbjct: 138339 cacaaatatacaagaaaata 138358

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>gb|AC079815.9| Trypanosoma brucei chromosome 4 clone RPCI93-3M17, complete sequence
          Length = 144365

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 472   tgctgcatcatgtaatggtt 491
             ||||||||||||||||||||
Sbjct: 45839 tgctgcatcatgtaatggtt 45820

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>gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence
          Length = 2481190

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 472     tgctgcatcatgtaatggtt 491
               ||||||||||||||||||||
Sbjct: 2140209 tgctgcatcatgtaatggtt 2140228

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>gb|BC074468.1| Xenopus laevis MGC84763 protein, mRNA (cDNA clone MGC:84763
            IMAGE:6950670), complete cds
          Length = 2026

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 571  ttagcagcgcctgctgatgc 590
            ||||||||||||||||||||
Sbjct: 1789 ttagcagcgcctgctgatgc 1808

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>gb|AC138004.3| Oryza sativa chromosome 3 BAC OSJNBb0023J24 genomic sequence, complete
             sequence
          Length = 130193

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 44    cacaaatatacaagaaaata 63
             ||||||||||||||||||||
Sbjct: 60436 cacaaatatacaagaaaata 60417

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 44       cacaaatatacaagaaaata 63
                ||||||||||||||||||||
Sbjct: 25242272 cacaaatatacaagaaaata 25242291

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>gb|AC162936.3| Mus musculus BAC clone RP23-108K5 from chromosome 14, complete sequence
          Length = 236917

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 40     caaacacaaatatacaagaa 59
              ||||||||||||||||||||
Sbjct: 130247 caaacacaaatatacaagaa 130266

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>gb|AC123860.4| Mus musculus BAC clone RP23-349N13 from chromosome 14, complete sequence
          Length = 191104

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 485    aatggttttgatgtacaggt 504
              ||||||||||||||||||||
Sbjct: 182297 aatggttttgatgtacaggt 182316

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>gb|AC122903.4| Mus musculus BAC clone RP23-44N5 from chromosome 1, complete sequence
          Length = 169832

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 445   agctgctcaggcatgttgtt 464
             ||||||||||||||||||||
Sbjct: 96845 agctgctcaggcatgttgtt 96826

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>emb|CR391904.14| Zebrafish DNA sequence from clone DKEY-165J6 in linkage group 3,
             complete sequence
          Length = 147391

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 516   ctgctgaggctgctgaggtggaac 539
             |||||| |||||||||||||||||
Sbjct: 33168 ctgctgtggctgctgaggtggaac 33145

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>gb|AC121985.3| Mus musculus BAC clone RP24-293C3 from chromosome 8, complete sequence
          Length = 150444

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 414   tccttgttgccttggaagca 433
             ||||||||||||||||||||
Sbjct: 13324 tccttgttgccttggaagca 13305

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>gb|AC015983.7| Homo sapiens BAC clone RP11-560I19 from 7, complete sequence
          Length = 177476

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 67     gctagaagcaccgaactact 86
              ||||||||||||||||||||
Sbjct: 168312 gctagaagcaccgaactact 168293

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>gb|AC101811.3| Mus musculus chromosome 19, clone RP24-295O9, complete sequence
          Length = 146963

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    agaacaccaaacacaaatat 52
             ||||||||||||||||||||
Sbjct: 58489 agaacaccaaacacaaatat 58470

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>gb|AC109280.9| Mus musculus chromosome 18, clone RP23-400B7, complete sequence
          Length = 213683

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 190   cagggctttgtgcattctgg 209
             ||||||||||||||||||||
Sbjct: 75708 cagggctttgtgcattctgg 75727

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>gb|AC162444.2| Mus musculus chromosome 19, clone RP24-75M1, complete sequence
          Length = 197112

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 33    agaacaccaaacacaaatat 52
             ||||||||||||||||||||
Sbjct: 25664 agaacaccaaacacaaatat 25683

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>emb|AL451048.13| Human DNA sequence from clone RP11-298A8 on chromosome Xq26.3-27.3
             Contains the gene for a novel protein similar to SPANX
             family member B1 (SPANXB1) and a novel gene, complete
             sequence
          Length = 99793

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 40    caaacacaaatatacaagaaaata 63
             |||||| |||||||||||||||||
Sbjct: 66692 caaacaaaaatatacaagaaaata 66715

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>emb|AL136169.6| Human DNA sequence from clone RP4-809E13 on chromosome Xq26.1-27.1
             Contains the CXX1 gene for CAAX box 1, two CAAX box 1
             (CXX1) pseudogenes and three CpG islands, complete
             sequence
          Length = 67201

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    tacagaacaccaaacacaaa 49
             ||||||||||||||||||||
Sbjct: 38758 tacagaacaccaaacacaaa 38739

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>gb|AC096310.9| Rattus norvegicus 1 BAC CH230-121B19 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 218258

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 169   aatatgaaacaaatttttct 188
             ||||||||||||||||||||
Sbjct: 32814 aatatgaaacaaatttttct 32795

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>emb|AL844147.9| Mouse DNA sequence from clone RP23-145N4 on chromosome 11 Contains a
             novel gene, the 3' end of the Acyp2 gene for muscle type
             acylphosphatase 2 and a proteasome (prosome, macropain)
             non-ATPase 26S subunit14 (Psmd14) pseudogene, complete
             sequence
          Length = 228444

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 519   ctgaggctgctgaggtggaa 538
             ||||||||||||||||||||
Sbjct: 89623 ctgaggctgctgaggtggaa 89604

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>emb|AL731726.11| Mouse DNA sequence from clone RP23-97P13 on chromosome 11 Contains a
            novel gene and a CpG island, complete sequence
          Length = 47745

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 188  tccagggctttgtgcattct 207
            ||||||||||||||||||||
Sbjct: 6685 tccagggctttgtgcattct 6666

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>gb|AC117392.4| Homo sapiens 3 BAC RP11-6F2 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 147520

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 47     aaatatacaagaaaataggg 66
              ||||||||||||||||||||
Sbjct: 107141 aaatatacaagaaaataggg 107122

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>gb|AC110025.4| Homo sapiens chromosome 8, clone CTD-2294G15, complete sequence
          Length = 108074

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 170   atatgaaacaaatttttctc 189
             ||||||||||||||||||||
Sbjct: 97295 atatgaaacaaatttttctc 97314

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>gb|AC069359.5| Homo sapiens chromosome 8, clone CTD-2003P13, complete sequence
          Length = 86991

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 170   atatgaaacaaatttttctc 189
             ||||||||||||||||||||
Sbjct: 26971 atatgaaacaaatttttctc 26990

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>gb|AC010321.8| Homo sapiens chromosome 16 clone CTD-2540M10, complete sequence
          Length = 207256

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 33     agaacaccaaacacaaatatacaa 56
              ||||||| ||||||||||||||||
Sbjct: 196518 agaacacaaaacacaaatatacaa 196495

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>gb|AC161538.7| Mus musculus 6 BAC RP23-1D15 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 211933

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 328   acagcaccatatgaaggtggggtg 351
             ||||||||||||||||| ||||||
Sbjct: 41138 acagcaccatatgaaggcggggtg 41161

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>gb|AC160148.7| Mus musculus 6 BAC RP23-384N6 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 207306

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 328    acagcaccatatgaaggtggggtg 351
              ||||||||||||||||| ||||||
Sbjct: 116012 acagcaccatatgaaggcggggtg 116035

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>gb|AC093179.1| Homo sapiens chromosome 3 clone RP11-983J7 map 3p, complete sequence
          Length = 181321

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 126    gaccaagttacacggagcta 145
              ||||||||||||||||||||
Sbjct: 169863 gaccaagttacacggagcta 169882

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 44       cacaaatatacaagaaaata 63
                ||||||||||||||||||||
Sbjct: 25333672 cacaaatatacaagaaaata 25333691

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>gb|AC157911.5| Mus musculus chromosome 19, clone RP24-192F3, complete sequence
          Length = 168559

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    agaacaccaaacacaaatat 52
             ||||||||||||||||||||
Sbjct: 25105 agaacaccaaacacaaatat 25086

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>gb|AC008938.9| Homo sapiens chromosome 16 clone CTD-2313J23, complete sequence
          Length = 99486

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 33    agaacaccaaacacaaatatacaa 56
             ||||||| ||||||||||||||||
Sbjct: 59716 agaacacaaaacacaaatatacaa 59693

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>gb|AC019330.3| Homo sapiens BAC clone RP11-81N16 from 2, complete sequence
          Length = 167777

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 42    aacacaaatatacaagaaaa 61
             ||||||||||||||||||||
Sbjct: 43577 aacacaaatatacaagaaaa 43558

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>gb|AC090937.2| Homo sapiens chromosome 3 clone RP11-316A10 map 3p, complete sequence
          Length = 160702

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 126   gaccaagttacacggagcta 145
             ||||||||||||||||||||
Sbjct: 48377 gaccaagttacacggagcta 48358

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>gb|AC161879.5| Mus musculus BAC clone RP23-264A15 from chromosome 1, complete sequence
          Length = 206995

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 177    acaaatttttctccagggctttgt 200
              ||||| ||||||||||||||||||
Sbjct: 136285 acaaacttttctccagggctttgt 136262

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>gb|AC140217.3| Mus musculus BAC clone RP23-279O5 from 8, complete sequence
          Length = 224205

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 414   tccttgttgccttggaagca 433
             ||||||||||||||||||||
Sbjct: 48931 tccttgttgccttggaagca 48950

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>emb|CT025570.7| Mouse DNA sequence from clone RP24-82O4 on chromosome 14, complete
              sequence
          Length = 232110

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 485    aatggttttgatgtacaggt 504
              ||||||||||||||||||||
Sbjct: 147611 aatggttttgatgtacaggt 147592

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>dbj|BA000021.3| Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA,
              complete genome
          Length = 697724

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 166    agtaatatgaaacaaatttt 185
              ||||||||||||||||||||
Sbjct: 678892 agtaatatgaaacaaatttt 678873

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>emb|AL805951.6| Mouse DNA sequence from clone RP23-326P3 on chromosome 4, complete
             sequence
          Length = 197080

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 169   aatatgaaacaaatttttct 188
             ||||||||||||||||||||
Sbjct: 15016 aatatgaaacaaatttttct 14997

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>emb|AL732538.6| Mouse DNA sequence from clone RP23-242O9 on chromosome 4, complete
             sequence
          Length = 172802

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 190   cagggctttgtgcattctgg 209
             ||||||||||||||||||||
Sbjct: 37548 cagggctttgtgcattctgg 37529


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,917,005
Number of Sequences: 3902068
Number of extensions: 5917005
Number of successful extensions: 121394
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 121090
Number of HSP's gapped (non-prelim): 296
length of query: 637
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 614
effective length of database: 17,143,297,704
effective search space: 10525984790256
effective search space used: 10525984790256
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result