| Clone Name | rbah60o20 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY109539.1| Zea mays CL2484_1 mRNA sequence Length = 5572 Score = 67.9 bits (34), Expect = 2e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 66 ccttgcagcctagcgtcagcgaaccaatttacaggggt 103 |||||||||||||||||||| ||||||||||||||||| Sbjct: 5431 ccttgcagcctagcgtcagcaaaccaatttacaggggt 5394
>gb|M59190.1|MZEFEGLU Zea mays ferredoxin-dependent glutamate synthase mRNA, complete cds Length = 5617 Score = 67.9 bits (34), Expect = 2e-08 Identities = 37/38 (97%) Strand = Plus / Minus Query: 66 ccttgcagcctagcgtcagcgaaccaatttacaggggt 103 |||||||||||||||||||| ||||||||||||||||| Sbjct: 5431 ccttgcagcctagcgtcagcaaaccaatttacaggggt 5394
>emb|Y12595.1|OSGOG2 O.sativa mRNA for Fd-GOGAT, partial, clone OsGog2 Length = 4120 Score = 54.0 bits (27), Expect = 2e-04 Identities = 38/42 (90%) Strand = Plus / Minus Query: 168 aagatgccttggacagagcttncacaaaattgcagcctttgg 209 |||||||||||| |||||||| |||||||| |||| |||||| Sbjct: 3687 aagatgccttgggcagagcttccacaaaatcgcagtctttgg 3646 Score = 50.1 bits (25), Expect = 0.004 Identities = 28/29 (96%) Strand = Plus / Minus Query: 74 cctagcgtcagcgaaccaatttacagggg 102 |||||||||||| |||||||||||||||| Sbjct: 3790 cctagcgtcagcaaaccaatttacagggg 3762
>emb|Y12594.1|OSGOG1 O.sativa mRNA for Fd-GOGAT, partial, clone OsGog1 Length = 2851 Score = 54.0 bits (27), Expect = 2e-04 Identities = 38/42 (90%) Strand = Plus / Minus Query: 168 aagatgccttggacagagcttncacaaaattgcagcctttgg 209 |||||||||||| |||||||| |||||||| |||| |||||| Sbjct: 2418 aagatgccttgggcagagcttccacaaaatcgcagtctttgg 2377 Score = 50.1 bits (25), Expect = 0.004 Identities = 28/29 (96%) Strand = Plus / Minus Query: 74 cctagcgtcagcgaaccaatttacagggg 102 |||||||||||| |||||||||||||||| Sbjct: 2521 cctagcgtcagcaaaccaatttacagggg 2493
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 54.0 bits (27), Expect = 2e-04 Identities = 38/42 (90%) Strand = Plus / Plus Query: 168 aagatgccttggacagagcttncacaaaattgcagcctttgg 209 |||||||||||| |||||||| |||||||| |||| |||||| Sbjct: 27669804 aagatgccttgggcagagcttccacaaaatcgcagtctttgg 27669845 Score = 50.1 bits (25), Expect = 0.004 Identities = 28/29 (96%) Strand = Plus / Plus Query: 74 cctagcgtcagcgaaccaatttacagggg 102 |||||||||||| |||||||||||||||| Sbjct: 27669701 cctagcgtcagcaaaccaatttacagggg 27669729
>dbj|AP005184.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0047B07 Length = 157797 Score = 54.0 bits (27), Expect = 2e-04 Identities = 38/42 (90%) Strand = Plus / Plus Query: 168 aagatgccttggacagagcttncacaaaattgcagcctttgg 209 |||||||||||| |||||||| |||||||| |||| |||||| Sbjct: 126797 aagatgccttgggcagagcttccacaaaatcgcagtctttgg 126838 Score = 50.1 bits (25), Expect = 0.004 Identities = 28/29 (96%) Strand = Plus / Plus Query: 74 cctagcgtcagcgaaccaatttacagggg 102 |||||||||||| |||||||||||||||| Sbjct: 126694 cctagcgtcagcaaaccaatttacagggg 126722
>dbj|AP003833.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1477_F01 Length = 158792 Score = 54.0 bits (27), Expect = 2e-04 Identities = 38/42 (90%) Strand = Plus / Plus Query: 168 aagatgccttggacagagcttncacaaaattgcagcctttgg 209 |||||||||||| |||||||| |||||||| |||| |||||| Sbjct: 48906 aagatgccttgggcagagcttccacaaaatcgcagtctttgg 48947 Score = 50.1 bits (25), Expect = 0.004 Identities = 28/29 (96%) Strand = Plus / Plus Query: 74 cctagcgtcagcgaaccaatttacagggg 102 |||||||||||| |||||||||||||||| Sbjct: 48803 cctagcgtcagcaaaccaatttacagggg 48831
>dbj|AK068130.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013132D11, full insert sequence Length = 3596 Score = 54.0 bits (27), Expect = 2e-04 Identities = 38/42 (90%) Strand = Plus / Minus Query: 168 aagatgccttggacagagcttncacaaaattgcagcctttgg 209 |||||||||||| |||||||| |||||||| |||| |||||| Sbjct: 3302 aagatgccttgggcagagcttccacaaaatcgcagtctttgg 3261 Score = 50.1 bits (25), Expect = 0.004 Identities = 28/29 (96%) Strand = Plus / Minus Query: 74 cctagcgtcagcgaaccaatttacagggg 102 |||||||||||| |||||||||||||||| Sbjct: 3405 cctagcgtcagcaaaccaatttacagggg 3377
>gb|AY819158.1| Hyla palmeri proopiomelanocortin A (POMC) gene, partial cds Length = 523 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 166 agaagatgccttggacagag 185 |||||||||||||||||||| Sbjct: 229 agaagatgccttggacagag 248
>emb|AL583830.7| Human DNA sequence from clone RP11-172L10 on chromosome 1 Contains the 5' end of a variant of the KCNK2 gene for potassium channel subfamily K member 2 and a translocase of inner mitochondrial membrane 17 homolog A (yeast) (TIMM17A) pseudogene, complete sequence Length = 151469 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 253 tttcaagtatctgcagttta 272 |||||||||||||||||||| Sbjct: 104263 tttcaagtatctgcagttta 104244
>gb|AC099563.3| Homo sapiens chromosome 1 clone RP11-323K10, complete sequence Length = 91282 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 tttcaagtatctgcagttta 272 |||||||||||||||||||| Sbjct: 49042 tttcaagtatctgcagttta 49061
>gb|AC068954.5| Homo sapiens chromosome 8, clone RP11-45A11, complete sequence Length = 163541 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 aaaattgcagcctttggtga 212 |||||||||||||||||||| Sbjct: 106966 aaaattgcagcctttggtga 106985
>gb|AC009957.11| Homo sapiens BAC clone RP11-285H23 from 2, complete sequence Length = 191119 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 gggtggtgtgcctaggttgc 119 |||||||||||||||||||| Sbjct: 151148 gggtggtgtgcctaggttgc 151129 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,789,770 Number of Sequences: 3902068 Number of extensions: 1789770 Number of successful extensions: 25631 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 25603 Number of HSP's gapped (non-prelim): 28 length of query: 284 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 262 effective length of database: 17,147,199,772 effective search space: 4492566340264 effective search space used: 4492566340264 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)