ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah60o20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY109539.1| Zea mays CL2484_1 mRNA sequence 68 2e-08
2gb|M59190.1|MZEFEGLU Zea mays ferredoxin-dependent glutamate syn... 68 2e-08
3emb|Y12595.1|OSGOG2 O.sativa mRNA for Fd-GOGAT, partial, clone O... 54 2e-04
4emb|Y12594.1|OSGOG1 O.sativa mRNA for Fd-GOGAT, partial, clone O... 54 2e-04
5dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 54 2e-04
6dbj|AP005184.5| Oryza sativa (japonica cultivar-group) genomic D... 54 2e-04
7dbj|AP003833.3| Oryza sativa (japonica cultivar-group) genomic D... 54 2e-04
8dbj|AK068130.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 2e-04
9gb|AY819158.1| Hyla palmeri proopiomelanocortin A (POMC) gene, p... 40 3.7
10emb|AL583830.7| Human DNA sequence from clone RP11-172L10 on chr... 40 3.7
11gb|AC099563.3| Homo sapiens chromosome 1 clone RP11-323K10, comp... 40 3.7
12gb|AC068954.5| Homo sapiens chromosome 8, clone RP11-45A11, comp... 40 3.7
13gb|AC009957.11| Homo sapiens BAC clone RP11-285H23 from 2, compl... 40 3.7

>gb|AY109539.1| Zea mays CL2484_1 mRNA sequence
          Length = 5572

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                  
Query: 66   ccttgcagcctagcgtcagcgaaccaatttacaggggt 103
            |||||||||||||||||||| |||||||||||||||||
Sbjct: 5431 ccttgcagcctagcgtcagcaaaccaatttacaggggt 5394



to top

>gb|M59190.1|MZEFEGLU Zea mays ferredoxin-dependent glutamate synthase mRNA, complete cds
          Length = 5617

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 37/38 (97%)
 Strand = Plus / Minus

                                                  
Query: 66   ccttgcagcctagcgtcagcgaaccaatttacaggggt 103
            |||||||||||||||||||| |||||||||||||||||
Sbjct: 5431 ccttgcagcctagcgtcagcaaaccaatttacaggggt 5394



to top

>emb|Y12595.1|OSGOG2 O.sativa mRNA for Fd-GOGAT, partial, clone OsGog2
          Length = 4120

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                      
Query: 168  aagatgccttggacagagcttncacaaaattgcagcctttgg 209
            |||||||||||| |||||||| |||||||| |||| ||||||
Sbjct: 3687 aagatgccttgggcagagcttccacaaaatcgcagtctttgg 3646



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 74   cctagcgtcagcgaaccaatttacagggg 102
            |||||||||||| ||||||||||||||||
Sbjct: 3790 cctagcgtcagcaaaccaatttacagggg 3762



to top

>emb|Y12594.1|OSGOG1 O.sativa mRNA for Fd-GOGAT, partial, clone OsGog1
          Length = 2851

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                      
Query: 168  aagatgccttggacagagcttncacaaaattgcagcctttgg 209
            |||||||||||| |||||||| |||||||| |||| ||||||
Sbjct: 2418 aagatgccttgggcagagcttccacaaaatcgcagtctttgg 2377



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 74   cctagcgtcagcgaaccaatttacagggg 102
            |||||||||||| ||||||||||||||||
Sbjct: 2521 cctagcgtcagcaaaccaatttacagggg 2493



to top

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                          
Query: 168      aagatgccttggacagagcttncacaaaattgcagcctttgg 209
                |||||||||||| |||||||| |||||||| |||| ||||||
Sbjct: 27669804 aagatgccttgggcagagcttccacaaaatcgcagtctttgg 27669845



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                             
Query: 74       cctagcgtcagcgaaccaatttacagggg 102
                |||||||||||| ||||||||||||||||
Sbjct: 27669701 cctagcgtcagcaaaccaatttacagggg 27669729



to top

>dbj|AP005184.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0047B07
          Length = 157797

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                        
Query: 168    aagatgccttggacagagcttncacaaaattgcagcctttgg 209
              |||||||||||| |||||||| |||||||| |||| ||||||
Sbjct: 126797 aagatgccttgggcagagcttccacaaaatcgcagtctttgg 126838



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                           
Query: 74     cctagcgtcagcgaaccaatttacagggg 102
              |||||||||||| ||||||||||||||||
Sbjct: 126694 cctagcgtcagcaaaccaatttacagggg 126722



to top

>dbj|AP003833.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1477_F01
          Length = 158792

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                       
Query: 168   aagatgccttggacagagcttncacaaaattgcagcctttgg 209
             |||||||||||| |||||||| |||||||| |||| ||||||
Sbjct: 48906 aagatgccttgggcagagcttccacaaaatcgcagtctttgg 48947



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 74    cctagcgtcagcgaaccaatttacagggg 102
             |||||||||||| ||||||||||||||||
Sbjct: 48803 cctagcgtcagcaaaccaatttacagggg 48831



to top

>dbj|AK068130.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013132D11, full
            insert sequence
          Length = 3596

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                      
Query: 168  aagatgccttggacagagcttncacaaaattgcagcctttgg 209
            |||||||||||| |||||||| |||||||| |||| ||||||
Sbjct: 3302 aagatgccttgggcagagcttccacaaaatcgcagtctttgg 3261



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 74   cctagcgtcagcgaaccaatttacagggg 102
            |||||||||||| ||||||||||||||||
Sbjct: 3405 cctagcgtcagcaaaccaatttacagggg 3377



to top

>gb|AY819158.1| Hyla palmeri proopiomelanocortin A (POMC) gene, partial cds
          Length = 523

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 166 agaagatgccttggacagag 185
           ||||||||||||||||||||
Sbjct: 229 agaagatgccttggacagag 248



to top

>emb|AL583830.7| Human DNA sequence from clone RP11-172L10 on chromosome 1 Contains the 5'
              end of a variant of the KCNK2 gene for potassium channel
              subfamily K member 2 and a translocase of inner
              mitochondrial membrane 17 homolog A (yeast) (TIMM17A)
              pseudogene, complete sequence
          Length = 151469

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 253    tttcaagtatctgcagttta 272
              ||||||||||||||||||||
Sbjct: 104263 tttcaagtatctgcagttta 104244



to top

>gb|AC099563.3| Homo sapiens chromosome 1 clone RP11-323K10, complete sequence
          Length = 91282

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 253   tttcaagtatctgcagttta 272
             ||||||||||||||||||||
Sbjct: 49042 tttcaagtatctgcagttta 49061



to top

>gb|AC068954.5| Homo sapiens chromosome 8, clone RP11-45A11, complete sequence
          Length = 163541

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 193    aaaattgcagcctttggtga 212
              ||||||||||||||||||||
Sbjct: 106966 aaaattgcagcctttggtga 106985



to top

>gb|AC009957.11| Homo sapiens BAC clone RP11-285H23 from 2, complete sequence
          Length = 191119

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 100    gggtggtgtgcctaggttgc 119
              ||||||||||||||||||||
Sbjct: 151148 gggtggtgtgcctaggttgc 151129


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,789,770
Number of Sequences: 3902068
Number of extensions: 1789770
Number of successful extensions: 25631
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25603
Number of HSP's gapped (non-prelim): 28
length of query: 284
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 262
effective length of database: 17,147,199,772
effective search space: 4492566340264
effective search space used: 4492566340264
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top