ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah60n19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC004056.1|AC004056 Homo sapiens chromosome 4 clone B227H22 m... 42 1.7
2gb|AC154457.2| Mus musculus BAC clone RP24-159K2 from chromosome... 40 6.8
3gb|AC068944.5| Homo sapiens BAC clone RP11-769N22 from 4, comple... 40 6.8
4gb|AC155943.9| Mus musculus 10 BAC RP24-461P19 (Roswell Park Can... 40 6.8
5dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 6.8
6emb|CT030729.8| Mouse DNA sequence from clone RP23-74P22 on chro... 40 6.8
7gb|AC154178.1| Mus musculus BAC clone RP23-465N18 from 17, compl... 40 6.8

>gb|AC004056.1|AC004056 Homo sapiens chromosome 4 clone B227H22 map 4q25, complete sequence
          Length = 138799

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 426   agagttgatgacatggaagaa 446
             |||||||||||||||||||||
Sbjct: 15426 agagttgatgacatggaagaa 15446



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>gb|AC154457.2| Mus musculus BAC clone RP24-159K2 from chromosome 17, complete sequence
          Length = 130975

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 41     atatgtgttgatacaacaac 60
              ||||||||||||||||||||
Sbjct: 130704 atatgtgttgatacaacaac 130723



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>gb|AC068944.5| Homo sapiens BAC clone RP11-769N22 from 4, complete sequence
          Length = 169662

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 292   gctccagaacgcaggcagga 311
             ||||||||||||||||||||
Sbjct: 13280 gctccagaacgcaggcagga 13299



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>gb|AC155943.9| Mus musculus 10 BAC RP24-461P19 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 158911

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 436   acatggaagaagcctggtcc 455
             ||||||||||||||||||||
Sbjct: 68445 acatggaagaagcctggtcc 68426



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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 78     tcgaaaccaccgtgtggccg 97
              ||||||||||||||||||||
Sbjct: 220819 tcgaaaccaccgtgtggccg 220800



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>emb|CT030729.8| Mouse DNA sequence from clone RP23-74P22 on chromosome 17, complete
            sequence
          Length = 164567

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 41   atatgtgttgatacaacaac 60
            ||||||||||||||||||||
Sbjct: 1729 atatgtgttgatacaacaac 1748



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>gb|AC154178.1| Mus musculus BAC clone RP23-465N18 from 17, complete sequence
          Length = 191399

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 175    acagacagagacatgtgttctgcc 198
              |||||||||||| |||||||||||
Sbjct: 102778 acagacagagacttgtgttctgcc 102755


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,897,324
Number of Sequences: 3902068
Number of extensions: 3897324
Number of successful extensions: 65509
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65487
Number of HSP's gapped (non-prelim): 22
length of query: 504
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 482
effective length of database: 17,147,199,772
effective search space: 8264950290104
effective search space used: 8264950290104
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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