ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah61c17 |
|---|---|
| Clone Library Name | barley_pub |
>MRAW_SHISS (Q3Z5S7) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)| Length = 313 Score = 33.9 bits (76), Expect = 0.36 Identities = 21/50 (42%), Positives = 27/50 (54%) Frame = +1 Query: 415 APGGVLAEEPVLVLADAVQHLPLRRRARPSCVVAGLPVRGDQLVHLGGRQ 564 APGG L+ L D + +R +R V AGLP+ +QL LGGRQ Sbjct: 231 APGGRLSIISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQ 280
>MRAW_SHIFL (Q83SN7) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)| Length = 313 Score = 33.9 bits (76), Expect = 0.36 Identities = 21/50 (42%), Positives = 27/50 (54%) Frame = +1 Query: 415 APGGVLAEEPVLVLADAVQHLPLRRRARPSCVVAGLPVRGDQLVHLGGRQ 564 APGG L+ L D + +R +R V AGLP+ +QL LGGRQ Sbjct: 231 APGGRLSIISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQ 280
>MRAW_SHIDS (Q32K10) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)| Length = 313 Score = 33.9 bits (76), Expect = 0.36 Identities = 21/50 (42%), Positives = 27/50 (54%) Frame = +1 Query: 415 APGGVLAEEPVLVLADAVQHLPLRRRARPSCVVAGLPVRGDQLVHLGGRQ 564 APGG L+ L D + +R +R V AGLP+ +QL LGGRQ Sbjct: 231 APGGRLSIISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQ 280
>MRAW_SHIBS (Q326F3) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)| Length = 313 Score = 33.9 bits (76), Expect = 0.36 Identities = 21/50 (42%), Positives = 27/50 (54%) Frame = +1 Query: 415 APGGVLAEEPVLVLADAVQHLPLRRRARPSCVVAGLPVRGDQLVHLGGRQ 564 APGG L+ L D + +R +R V AGLP+ +QL LGGRQ Sbjct: 231 APGGRLSIISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQ 280
>MRAW_ECOLI (P60390) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)| Length = 313 Score = 33.9 bits (76), Expect = 0.36 Identities = 21/50 (42%), Positives = 27/50 (54%) Frame = +1 Query: 415 APGGVLAEEPVLVLADAVQHLPLRRRARPSCVVAGLPVRGDQLVHLGGRQ 564 APGG L+ L D + +R +R V AGLP+ +QL LGGRQ Sbjct: 231 APGGRLSIISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQ 280
>MRAW_ECOL6 (Q8FL68) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)| Length = 313 Score = 33.9 bits (76), Expect = 0.36 Identities = 21/50 (42%), Positives = 27/50 (54%) Frame = +1 Query: 415 APGGVLAEEPVLVLADAVQHLPLRRRARPSCVVAGLPVRGDQLVHLGGRQ 564 APGG L+ L D + +R +R V AGLP+ +QL LGGRQ Sbjct: 231 APGGRLSIISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQ 280
>MRAW_ECO57 (P60391) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)| Length = 313 Score = 33.9 bits (76), Expect = 0.36 Identities = 21/50 (42%), Positives = 27/50 (54%) Frame = +1 Query: 415 APGGVLAEEPVLVLADAVQHLPLRRRARPSCVVAGLPVRGDQLVHLGGRQ 564 APGG L+ L D + +R +R V AGLP+ +QL LGGRQ Sbjct: 231 APGGRLSIISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKLGGRQ 280
>SYS_CORGL (Q8NLP6) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 422 Score = 32.0 bits (71), Expect = 1.4 Identities = 19/45 (42%), Positives = 23/45 (51%) Frame = -2 Query: 567 ALTSAEVDELITANRQPSDYAGWAGASAEWKMLYSIGKDKDGLLR 433 AL DE+I N P YAGW +S + S GKD G+LR Sbjct: 230 ALAGYHKDEIIDLNEGPVKYAGW--SSCFRREAGSYGKDTRGILR 272
>SYS_COREF (Q8FLY5) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 419 Score = 32.0 bits (71), Expect = 1.4 Identities = 19/45 (42%), Positives = 23/45 (51%) Frame = -2 Query: 567 ALTSAEVDELITANRQPSDYAGWAGASAEWKMLYSIGKDKDGLLR 433 AL DE+I N P YAGW +S + S GKD G+LR Sbjct: 230 ALAGYHKDEIIDLNNGPVKYAGW--SSCFRREAGSYGKDTRGILR 272
>CG010_HUMAN (Q9HAC7) Protein C7orf10 (Dermal papilla-derived protein 13)| Length = 445 Score = 32.0 bits (71), Expect = 1.4 Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 18/135 (13%) Frame = -2 Query: 516 SDYAGW-AGASAEWKMLYSIGKD-----KDGLLRKDAARGVYD-GSLFARVVQERRT--- 367 S AG+ A ASA +++ G + + G+ D A G+Y G++ A ++Q+ +T Sbjct: 177 SQRAGYDAVASAVSGLMHITGPENGDPVRPGVAMTDLATGLYAYGAIMAGLIQKYKTGKG 236 Query: 366 --------SSQEETQA*WVVRFIGGRHCPKRWRPV*TLESVRTDASLARYRALRTSNNYL 211 SSQ + ++ G+ KRW S+ Y+A +T + Y+ Sbjct: 237 LFIDCNLLSSQVACLSHIAANYLIGQKEAKRWGTA--------HGSIVPYQAFKTKDGYI 288 Query: 210 SGVIGSSRHAVTVCR 166 G+++ TVC+ Sbjct: 289 VVGAGNNQQFATVCK 303
>MRAW_SALTY (Q8ZRU8) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)| Length = 313 Score = 31.6 bits (70), Expect = 1.8 Identities = 20/50 (40%), Positives = 27/50 (54%) Frame = +1 Query: 415 APGGVLAEEPVLVLADAVQHLPLRRRARPSCVVAGLPVRGDQLVHLGGRQ 564 APGG L+ L D + +R ++R V AGLP+ QL LGGR+ Sbjct: 231 APGGRLSIISFHSLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRE 280
>MRAW_SALPA (Q5PDH4) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)| Length = 313 Score = 31.6 bits (70), Expect = 1.8 Identities = 20/50 (40%), Positives = 27/50 (54%) Frame = +1 Query: 415 APGGVLAEEPVLVLADAVQHLPLRRRARPSCVVAGLPVRGDQLVHLGGRQ 564 APGG L+ L D + +R ++R V AGLP+ QL LGGR+ Sbjct: 231 APGGRLSIISFHSLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKLGGRE 280
>RP1L1_HUMAN (Q8IWN7) Retinitis pigmentosa 1-like 1 protein| Length = 2480 Score = 31.2 bits (69), Expect = 2.4 Identities = 33/112 (29%), Positives = 43/112 (38%), Gaps = 18/112 (16%) Frame = -3 Query: 491 RRRSGRCCTASARTRTGSSARTPPGASTMAASSPGWCRSGGXXXXXKPRHD-----GLFG 327 +RRS C S + S+AR P G+ PG S G R G G Sbjct: 864 QRRSSSC--GSTGSSHQSTARGPGGSPQEGTRQPGPTPSPGPNSGASRRSSASQGAGSRG 921 Query: 326 SSEGVTVPSDGG---QSE----------HSSPSELMRRWLGTEHYVRVIITY 210 SE T+ S GG Q E SSP ++R WL +++TY Sbjct: 922 LSEEKTLRSGGGPQGQEEASGVSPSSLPRSSPEAVVREWLDNIPEEPILMTY 973
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 30.8 bits (68), Expect = 3.1 Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 3/83 (3%) Frame = -2 Query: 594 AKHAKTVPDALTSAEVDEL---ITANRQPSDYAGWAGASAEWKMLYSIGKDKDGLLRKDA 424 A+ AK D+ + E++ + ++ G G SA+ K L+ G +D ++ Sbjct: 460 AEDAKDAMDSCNNTEIEGRSIRLEFSQGGGPQGGGRGGSAQSKTLFVRGLSED--TTEET 517 Query: 423 ARGVYDGSLFARVVQERRTSSQE 355 + +DGS+ AR+V +R T + + Sbjct: 518 LKEAFDGSVNARIVTDRDTGASK 540
>Y575_WOLSU (Q7M9Z1) UPF0323 lipoprotein WS0575 precursor| Length = 217 Score = 30.0 bits (66), Expect = 5.3 Identities = 20/61 (32%), Positives = 26/61 (42%) Frame = -3 Query: 449 RTGSSARTPPGASTMAASSPGWCRSGGXXXXXKPRHDGLFGSSEGVTVPSDGGQSEHSSP 270 ++ SSA P G ST A+S+P + G FGSS + S SSP Sbjct: 166 KSSSSATAPRGTSTGASSTPSSAKG------------GYFGSSSSPSSAPSSSSSSSSSP 213 Query: 269 S 267 S Sbjct: 214 S 214
>MURD_AZOSE (Q5P6Z4) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC| 6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase) (D-glutamic acid-adding enzyme) Length = 466 Score = 30.0 bits (66), Expect = 5.3 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = -3 Query: 473 CCTASARTRTGSSARTPPGASTMAASSP 390 C AR R S +TPPG T+ A +P Sbjct: 25 CALRGARLRVADSRQTPPGLDTLRADAP 52
>DDX31_HUMAN (Q9H8H2) Probable ATP-dependent RNA helicase DDX31 (EC 3.6.1.-)| (DEAD box protein 31) (Helicain) Length = 851 Score = 30.0 bits (66), Expect = 5.3 Identities = 25/87 (28%), Positives = 32/87 (36%), Gaps = 6/87 (6%) Frame = -3 Query: 500 GRARRRSGRCCTASARTRTGSSARTPPGASTMAASSPGWCRSGGXXXXXKPRHDGLFGSS 321 GR RR G R + PP + + S W RSG P G GSS Sbjct: 27 GREGRREGLPPGGGTRGSLVPTRPVPPSPAPLGTSPYSWSRSG-------PGRGGGAGSS 79 Query: 320 E------GVTVPSDGGQSEHSSPSELM 258 G V + G H+SP++ M Sbjct: 80 RVPRGVPGPAVCAPGSLLHHASPTQTM 106
>TCEA3_HUMAN (O75764) Transcription elongation factor A protein 3 (Transcription| elongation factor S-II protein 3) (Transcription elongation factor TFIIS.h) Length = 348 Score = 29.3 bits (64), Expect = 9.0 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = +1 Query: 271 GLECSDWPPSLGTVTPSDEPNNP 339 GLECSDW P G P + +P Sbjct: 102 GLECSDWKPEAGLSPPRKKREDP 124
>HSP22_ORYSA (Q84J50) 17.4 kDa class I heat shock protein 2| Length = 159 Score = 29.3 bits (64), Expect = 9.0 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 3/66 (4%) Frame = -2 Query: 525 RQPSDYAGWAGASAEWK---MLYSIGKDKDGLLRKDAARGVYDGSLFARVVQERRTSSQE 355 R SD A +AGA +WK ++ D GL +++ V DG++ + R+ QE Sbjct: 41 RANSDAAAFAGARIDWKETPEVHVFKADVPGLKKEEVKVEVDDGNILQ--ISGERSREQE 98 Query: 354 ETQA*W 337 E W Sbjct: 99 EKSDKW 104
>KPYR_MOUSE (P53657) Pyruvate kinase isozymes R/L (EC 2.7.1.40) (L-PK)| Length = 574 Score = 29.3 bits (64), Expect = 9.0 Identities = 14/42 (33%), Positives = 21/42 (50%) Frame = -3 Query: 344 HDGLFGSSEGVTVPSDGGQSEHSSPSELMRRWLGTEHYVRVI 219 H G G+ +GV +P+ S +L+ G EHYV +I Sbjct: 242 HGGFLGNRKGVNLPNAEVDLPGLSEQDLLDLRFGVEHYVDII 283
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 29.3 bits (64), Expect = 9.0 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = -3 Query: 500 GRARRRSGRCCTASARTRTGSSARTPPGASTMAASSP 390 GR RRRS + S+ + + S +R+PP SSP Sbjct: 343 GRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSP 379
>MRAW_SALCH (Q57TD8) S-adenosyl-methyltransferase mraW (EC 2.1.1.-)| Length = 312 Score = 29.3 bits (64), Expect = 9.0 Identities = 19/50 (38%), Positives = 26/50 (52%) Frame = +1 Query: 415 APGGVLAEEPVLVLADAVQHLPLRRRARPSCVVAGLPVRGDQLVHLGGRQ 564 APGG L+ L D + +R ++R V AGLP+ Q LGGR+ Sbjct: 230 APGGRLSIISFHSLEDRIVKRFMREQSRGPQVPAGLPMTEAQRKKLGGRE 279
>P80C_HUMAN (P38432) Coilin (p80)| Length = 576 Score = 29.3 bits (64), Expect = 9.0 Identities = 16/48 (33%), Positives = 23/48 (47%) Frame = -3 Query: 431 RTPPGASTMAASSPGWCRSGGXXXXXKPRHDGLFGSSEGVTVPSDGGQ 288 R PG S+ A + GW RSG P G+S V++P+ G+ Sbjct: 352 RPGPGLSSQTAGAAGWRRSGSNGGGQAP------GASPSVSLPASLGR 393 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 78,143,052 Number of Sequences: 219361 Number of extensions: 1504029 Number of successful extensions: 4696 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 4483 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4679 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5196311029 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
