ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbah61c11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC010736.13| Homo sapiens BAC clone RP11-436F6 from 2, complete sequence Length = 204267 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Minus Query: 363 tggaacagcttctccttggtcac 385 ||||||||||||||||||||||| Sbjct: 162848 tggaacagcttctccttggtcac 162826
>ref|XM_644377.1| Entamoeba histolytica HM-1:IMSS hypothetical protein (299.t00007) partial mRNA Length = 1794 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Plus Query: 5 ttgttttttatttatatttatt 26 |||||||||||||||||||||| Sbjct: 1241 ttgttttttatttatatttatt 1262
>emb|CR382398.1| Plasmodium falciparum chromosome 6, complete sequence; segment 1/5 Length = 349418 Score = 44.1 bits (22), Expect = 0.56 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 ttttttatttatatttattctg 29 |||||||||||||||||||||| Sbjct: 318714 ttttttatttatatttattctg 318693
>emb|BX510304.12| Mouse DNA sequence from clone RP23-128I6 on chromosome 2, complete sequence Length = 160779 Score = 44.1 bits (22), Expect = 0.56 Identities = 25/26 (96%) Strand = Plus / Minus Query: 3 acttgttttttatttatatttattct 28 ||||||||||||||| |||||||||| Sbjct: 47307 acttgttttttatttttatttattct 47282
>ref|XM_465958.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1446 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 302 gccgtcgcccatgtacgcgag 322 ||||||||||||||||||||| Sbjct: 1236 gccgtcgcccatgtacgcgag 1216
>gb|BC072650.1| Mus musculus procollagen, type IV, alpha 1, mRNA (cDNA clone MGC:91373 IMAGE:6852661), complete cds Length = 6522 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 549 ttcctggtgtcaaaggagaag 569 ||||||||||||||||||||| Sbjct: 3473 ttcctggtgtcaaaggagaag 3493
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 395 cggctccacggcacttgtgctgctg 419 |||| |||||||||||||||||||| Sbjct: 165515 cggcgccacggcacttgtgctgctg 165539
>gb|AC115800.13| Mus musculus chromosome 8, clone RP23-407E22, complete sequence Length = 228513 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 549 ttcctggtgtcaaaggagaag 569 ||||||||||||||||||||| Sbjct: 179760 ttcctggtgtcaaaggagaag 179740
>emb|BX928756.13| Zebrafish DNA sequence from clone CH211-113K9 in linkage group 21, complete sequence Length = 157210 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 6 tgttttttatttatatttatt 26 ||||||||||||||||||||| Sbjct: 121672 tgttttttatttatatttatt 121652
>gb|AC151914.19| Medicago truncatula clone mth2-29f16, complete sequence Length = 111276 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 5 ttgttttttatttatatttat 25 ||||||||||||||||||||| Sbjct: 11807 ttgttttttatttatatttat 11827
>ref|NM_009931.1| Mus musculus procollagen, type IV, alpha 1 (Col4a1), mRNA Length = 6512 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 549 ttcctggtgtcaaaggagaag 569 ||||||||||||||||||||| Sbjct: 3514 ttcctggtgtcaaaggagaag 3534
>emb|AL596322.3| Human DNA sequence from clone RP11-31D17 on chromosome 1 Contains a novel gene, complete sequence Length = 129044 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 6 tgttttttatttatatttatt 26 ||||||||||||||||||||| Sbjct: 19279 tgttttttatttatatttatt 19259
>emb|AL359094.14| Human DNA sequence from clone RP11-223P11 on chromosome 10, complete sequence Length = 133029 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 545 ggaattcctggtgtcaaagga 565 ||||||||||||||||||||| Sbjct: 70962 ggaattcctggtgtcaaagga 70982
>emb|X06777.1|MMCOLA4 Mouse mRNA for basement membrane (type IV) collagen alpha chain Length = 3612 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 549 ttcctggtgtcaaaggagaag 569 ||||||||||||||||||||| Sbjct: 3533 ttcctggtgtcaaaggagaag 3553
>emb|AL645476.26| Mouse DNA sequence from clone RP23-70L6 on chromosome 11 Contains a CpG island, complete sequence Length = 143728 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 603 tgtgcagacatgaaaatggtg 623 ||||||||||||||||||||| Sbjct: 129499 tgtgcagacatgaaaatggtg 129479
>emb|CR388057.6| Zebrafish DNA sequence from clone DKEYP-28G3 in linkage group 5, complete sequence Length = 117970 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 6 tgttttttatttatatttatt 26 ||||||||||||||||||||| Sbjct: 80057 tgttttttatttatatttatt 80077
>gb|AC093454.3| Drosophila melanogaster 3L BAC RP98-23K2 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 168479 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 6 tgttttttatttatatttatt 26 ||||||||||||||||||||| Sbjct: 26514 tgttttttatttatatttatt 26494
>gb|AC010660.6| Drosophila melanogaster 3L BAC RP98-9I16 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 186795 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 6 tgttttttatttatatttatt 26 ||||||||||||||||||||| Sbjct: 11498 tgttttttatttatatttatt 11518
>gb|AC146553.12| Medicago truncatula clone mth2-9e24, complete sequence Length = 136675 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 ttgttttttatttatatttat 25 ||||||||||||||||||||| Sbjct: 4396 ttgttttttatttatatttat 4376
>dbj|AK147355.1| Mus musculus cDNA, RIKEN full-length enriched library, clone:M5C1019H14 product:procollagen, type IV, alpha 1, full insert sequence Length = 6533 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 549 ttcctggtgtcaaaggagaag 569 ||||||||||||||||||||| Sbjct: 3535 ttcctggtgtcaaaggagaag 3555
>dbj|AK147284.1| Mus musculus 14 days pregnant adult female placenta cDNA, RIKEN full-length enriched library, clone:M5C1007A19 product:procollagen, type IV, alpha 1, full insert sequence Length = 6526 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 549 ttcctggtgtcaaaggagaag 569 ||||||||||||||||||||| Sbjct: 3532 ttcctggtgtcaaaggagaag 3552
>gb|AC093425.2| Homo sapiens chromosome 1 clone RP11-470E16, complete sequence Length = 179499 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 6 tgttttttatttatatttatt 26 ||||||||||||||||||||| Sbjct: 88219 tgttttttatttatatttatt 88199
>dbj|AK159130.1| Mus musculus osteoclast-like cell cDNA, RIKEN full-length enriched library, clone:I420002P05 product:procollagen, type IV, alpha 1, full insert sequence Length = 5487 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 549 ttcctggtgtcaaaggagaag 569 ||||||||||||||||||||| Sbjct: 3571 ttcctggtgtcaaaggagaag 3591
>dbj|AK146487.1| Mus musculus 17 days embryo heart cDNA, RIKEN full-length enriched library, clone:I920012L13 product:procollagen, type IV, alpha 1, full insert sequence Length = 6361 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 549 ttcctggtgtcaaaggagaag 569 ||||||||||||||||||||| Sbjct: 3559 ttcctggtgtcaaaggagaag 3579
>dbj|AK147661.1| Mus musculus adult male brain UNDEFINED_CELL_LINE cDNA, RIKEN full-length enriched library, clone:M5C1103D20 product:procollagen, type IV, alpha 1, full insert sequence Length = 6573 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 549 ttcctggtgtcaaaggagaag 569 ||||||||||||||||||||| Sbjct: 3576 ttcctggtgtcaaaggagaag 3596
>gb|AC011346.5| Homo sapiens chromosome 5 clone CTC-295J13, complete sequence Length = 110077 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 8 ttttttatttatatttattct 28 ||||||||||||||||||||| Sbjct: 17125 ttttttatttatatttattct 17105
>gb|AF321518.1|AF321518 Bacillus mojavensis thymidylate synthase (thyA) and intron encoded BmoI (bmoI) genes, complete cds Length = 2957 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 cttgttttttatttatattta 24 ||||||||||||||||||||| Sbjct: 2535 cttgttttttatttatattta 2555
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 302 gccgtcgcccatgtacgcgag 322 ||||||||||||||||||||| Sbjct: 18580202 gccgtcgcccatgtacgcgag 18580222
>dbj|AP005299.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1789_D08 Length = 128673 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 302 gccgtcgcccatgtacgcgag 322 ||||||||||||||||||||| Sbjct: 121341 gccgtcgcccatgtacgcgag 121361
>dbj|AP004062.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1471_E11 Length = 103912 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 302 gccgtcgcccatgtacgcgag 322 ||||||||||||||||||||| Sbjct: 6558 gccgtcgcccatgtacgcgag 6578
>gb|AE003528.3| Drosophila melanogaster chromosome 3L, section 57 of 83 of the complete sequence Length = 283815 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 6 tgttttttatttatatttatt 26 ||||||||||||||||||||| Sbjct: 239877 tgttttttatttatatttatt 239897
>dbj|AP002007.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-762O23, complete sequence Length = 168922 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 1 agacttgttttttatttatatttat 25 ||||| ||||||||||||||||||| Sbjct: 118930 agactagttttttatttatatttat 118906
>gb|AC151534.2| Mus musculus BAC clone RP23-446E13 from 7, complete sequence Length = 184053 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 cttgttttttatttatattta 24 ||||||||||||||||||||| Sbjct: 79255 cttgttttttatttatattta 79275
>gb|AC164160.5| Mus musculus BAC clone RP23-343P15 from chromosome 7, complete sequence Length = 235030 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 4 cttgttttttatttatattta 24 ||||||||||||||||||||| Sbjct: 228122 cttgttttttatttatattta 228102
>gb|J04694.1|MUSCOL1A4A Mus musculus alpha-1 type IV collagen (Col4a-1) mRNA, complete cds Length = 6512 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 549 ttcctggtgtcaaaggagaag 569 ||||||||||||||||||||| Sbjct: 3514 ttcctggtgtcaaaggagaag 3534
>gb|M12879.1|MUSC4AI1 Mouse alpha-1 (IV) collagen gene, exon 14 Length = 93 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 549 ttcctggtgtcaaaggagaag 569 ||||||||||||||||||||| Sbjct: 64 ttcctggtgtcaaaggagaag 84
>gb|AC154301.2| Mus musculus BAC clone RP23-392P5 from chromosome 14, complete sequence Length = 207510 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 gttttttatttatatttatt 26 |||||||||||||||||||| Sbjct: 15480 gttttttatttatatttatt 15499
>ref|NM_185542.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1152 Score = 40.1 bits (20), Expect = 8.7 Identities = 38/44 (86%) Strand = Plus / Minus Query: 535 acctccactcggaattcctggtgtcaaaggagaaggtgcccttg 578 ||||||||||| | | | ||||||| ||||||||||| |||||| Sbjct: 694 acctccactcgcagtgcttggtgtcgaaggagaaggtccccttg 651
>gb|U41021.1| Caenorhabditis elegans cosmid F14D12, complete sequence Length = 40901 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 ttgttttttatttatatttattct 28 ||||||||||||||||||| |||| Sbjct: 2136 ttgttttttatttatattttttct 2113
>gb|AC161235.6| Mus musculus chromosome 3, clone RP24-86C19, complete sequence Length = 206729 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 3 acttgttttttatttatatttatt 26 ||||||||||||||||| |||||| Sbjct: 97349 acttgttttttatttatttttatt 97326
>gb|AC009394.5| Drosophila melanogaster clone BACR03J17, complete sequence Length = 199043 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 ttttttatttatatttattc 27 |||||||||||||||||||| Sbjct: 148881 ttttttatttatatttattc 148900
>gb|AC141884.4| Mus musculus BAC clone RP24-129E6 from chromosome 14, complete sequence Length = 174973 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 tgcataaaacatgtcaacaa 88 |||||||||||||||||||| Sbjct: 114488 tgcataaaacatgtcaacaa 114507
>ref|XM_587594.2| PREDICTED: Bos taurus similar to Zinc finger and BTB domain containing protein 39 (LOC510453), mRNA Length = 2329 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 422 ggaggcaacttcacaggagc 441 |||||||||||||||||||| Sbjct: 13 ggaggcaacttcacaggagc 32
>gb|AC112929.12| Mus musculus chromosome 14, clone RP23-432A7, complete sequence Length = 181674 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 ttttatttatatttattctg 29 |||||||||||||||||||| Sbjct: 32601 ttttatttatatttattctg 32620
>gb|AC164553.2| Mus musculus BAC clone RP23-361L12 from chromosome 14, complete sequence Length = 217754 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 tgcataaaacatgtcaacaa 88 |||||||||||||||||||| Sbjct: 57041 tgcataaaacatgtcaacaa 57060
>gb|AC147051.2| Mus musculus BAC clone RP23-90H22 from chromosome 8, complete sequence Length = 224213 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 ttttatttatatttattctg 29 |||||||||||||||||||| Sbjct: 67958 ttttatttatatttattctg 67977
>gb|AY316746.1| Rhizobium sp. NGR234 megaplasmid 2 contig 2, complete sequence Length = 236455 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 ttctccttggtcaccttcca 391 |||||||||||||||||||| Sbjct: 193829 ttctccttggtcaccttcca 193848
>emb|BX927327.14| Zebrafish DNA sequence from clone CH211-11C15 in linkage group 14, complete sequence Length = 182779 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 ttttatttatatttattctg 29 |||||||||||||||||||| Sbjct: 167667 ttttatttatatttattctg 167648
>emb|BX899180.11| Zebrafish DNA sequence from clone DKEY-287G19 in linkage group 21, complete sequence Length = 182150 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 gttttttatttatatttatt 26 |||||||||||||||||||| Sbjct: 157805 gttttttatttatatttatt 157786
>gb|AC111012.3| Mus musculus BAC clone RP24-146N3 from 8, complete sequence Length = 155637 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 ttttatttatatttattctg 29 |||||||||||||||||||| Sbjct: 88992 ttttatttatatttattctg 89011
>gb|AC124973.8| Mus musculus strain C57BL/6J clone rp23-329l13 map 19, complete sequence Length = 199006 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 5 ttgttttttatttatatttattct 28 ||||||||||||||| |||||||| Sbjct: 62635 ttgttttttatttatttttattct 62658
>gb|AE014822.1| Plasmodium falciparum 3D7 chromosome 14 section 7 of 13 of the complete sequence Length = 253924 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 3 acttgttttttatttatatttatt 26 |||| ||||||||||||||||||| Sbjct: 108209 acttattttttatttatatttatt 108186
>gb|AE014836.1| Plasmodium falciparum 3D7 chromosome 11 section 1 of 8 of the complete sequence Length = 250743 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 tttttatttatatttattct 28 |||||||||||||||||||| Sbjct: 232690 tttttatttatatttattct 232709
>emb|AL357654.9| Human DNA sequence from clone RP5-1025P18 on chromosome 20 Contains part of the gene for a novel protein (LOC284776), complete sequence Length = 22651 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 tttatttatatttattctgc 30 |||||||||||||||||||| Sbjct: 4591 tttatttatatttattctgc 4572
>gb|AC134818.1| Homo sapiens chromosome 5 clone RP11-184G11, complete sequence Length = 81872 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 ttttatttatatttattctg 29 |||||||||||||||||||| Sbjct: 30769 ttttatttatatttattctg 30750
>emb|AL050321.11|HSJ717M23 Human DNA sequence from clone RP4-717M23 on chromosome 20 Contains the CSRP2BP gene for CSRP2 binding protein, a chromosome 7 open reading frame 24 (C7orf24) pseudogene and two CpG islands, complete sequence Length = 101589 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 cttgttttttatttatattt 23 |||||||||||||||||||| Sbjct: 29625 cttgttttttatttatattt 29644
>emb|AL022144.1|HS35C21 Human DNA sequence from clone RP1-35C21 on chromosome 1q23-24, complete sequence Length = 91017 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 434 acaggagcagatgtacccgt 453 |||||||||||||||||||| Sbjct: 40332 acaggagcagatgtacccgt 40351
>gb|AC079842.19| Homo sapiens 12q BAC RP11-989K8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 133000 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 tttttatttatatttattct 28 |||||||||||||||||||| Sbjct: 130807 tttttatttatatttattct 130826
>emb|CR382139.1| Debaryomyces hansenii chromosome G of strain CBS767 of Debaryomyces hansenii Length = 2051428 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 ttttttatttatatttattc 27 |||||||||||||||||||| Sbjct: 573415 ttttttatttatatttattc 573396
>emb|AL663066.12| Mouse DNA sequence from clone RP23-416K12 on chromosome 11 Contains the 5' end of a novel genes, an H+ transporting ATPase V1 subunit G isoform 1 (Atp6v1g1) pseudogene, an upstream transcription factor 1 (Usf1) pseudogene, the 5' end of the Ssh2 gene for slingshot homolog 2 (Drosophila) and a CpG island, complete sequence Length = 160589 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 3 acttgttttttatttatatttatt 26 ||||||||| |||||||||||||| Sbjct: 152764 acttgttttatatttatatttatt 152787
>emb|AL627277.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 13/20 Length = 230050 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 tgttttttatttatatttat 25 |||||||||||||||||||| Sbjct: 211919 tgttttttatttatatttat 211900
>emb|AL935054.11| Mouse DNA sequence from clone RP23-280A12 on chromosome 11 Contains the 5' end of the gene for a novel protein (C330012F17Rik, C130096N06Rik), a ribosomal protein L37a (Rpl37a) pseudogene, a pseudogene similar to part of a novel protein (D130064H19Rik), a fibrillarin (Fbl) pseudogene, the 5' end of the gene for a novel protein (4931428D14Rik) (2300003H10) and three CpG islands, complete sequence Length = 199018 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 ttttttatttatatttattc 27 |||||||||||||||||||| Sbjct: 152733 ttttttatttatatttattc 152714
>gb|AC009773.27| Homo sapiens 12 BAC RP11-82C23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 130027 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 ttttttatttatatttattc 27 |||||||||||||||||||| Sbjct: 33701 ttttttatttatatttattc 33682
>gb|AC098613.2| Homo sapiens chromosome 3 clone RP11-24F11, complete sequence Length = 185437 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 gcacacagccatcacggtca 242 |||||||||||||||||||| Sbjct: 100421 gcacacagccatcacggtca 100402
>gb|AC027793.9| Homo sapiens chromosome 17, clone RP11-229K15, complete sequence Length = 137230 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 ttttttatttatatttattc 27 |||||||||||||||||||| Sbjct: 126048 ttttttatttatatttattc 126067
>gb|AC027287.21| Homo sapiens 12 BAC RP11-616L12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 202703 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 9 tttttatttatatttattct 28 |||||||||||||||||||| Sbjct: 2465 tttttatttatatttattct 2484
>gb|AC079915.7| Homo sapiens chromosome , clone RP11-142O6, complete sequence Length = 145148 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 ttttttatttatatttattc 27 |||||||||||||||||||| Sbjct: 11936 ttttttatttatatttattc 11955
>gb|AC022730.7| Homo sapiens chromosome 8, clone RP11-333A23, complete sequence Length = 155468 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 528 ccatgtaacctccactcgga 547 |||||||||||||||||||| Sbjct: 47303 ccatgtaacctccactcgga 47284
>gb|AC171140.2| Helobdella robusta clone CH306-1B2, complete sequence Length = 105143 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 tgttttttatttatatttat 25 |||||||||||||||||||| Sbjct: 9342 tgttttttatttatatttat 9361
>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome Length = 3544738 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 620 ggtgtgcccgtccgggtgca 639 |||||||||||||||||||| Sbjct: 2862365 ggtgtgcccgtccgggtgca 2862346
>emb|BX248521.12| Zebrafish DNA sequence from clone CH211-243C14 in linkage group 23, complete sequence Length = 144888 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 6 tgttttttatttatatttat 25 |||||||||||||||||||| Sbjct: 11560 tgttttttatttatatttat 11579
>gb|AC102282.20| Mus musculus chromosome 5, clone RP24-319P5, complete sequence Length = 175569 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 gttttttatttatatttatt 26 |||||||||||||||||||| Sbjct: 94961 gttttttatttatatttatt 94942
>gb|AC154792.2| Mus musculus BAC clone RP23-85E10 from chromosome 13, complete sequence Length = 201302 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 86 caaatagctttacatccagaaaac 109 |||||||||||||||| ||||||| Sbjct: 121724 caaatagctttacatctagaaaac 121701
>dbj|AK079307.1| Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:9630002O22 product:unclassifiable, full insert sequence Length = 3743 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 86 caaatagctttacatccagaaaac 109 |||||||||||||||| ||||||| Sbjct: 1089 caaatagctttacatctagaaaac 1112
>gb|AC138207.3| Homo sapiens chromosome 17, clone RP11-848P1, complete sequence Length = 212934 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 ttttttatttatatttattc 27 |||||||||||||||||||| Sbjct: 29640 ttttttatttatatttattc 29621
>gb|AC135782.4| Homo sapiens chromosome 16 clone CTD-2555A7, complete sequence Length = 163550 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 cataaaacatgtcaacaaat 90 |||||||||||||||||||| Sbjct: 60860 cataaaacatgtcaacaaat 60841
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 8.7 Identities = 38/44 (86%) Strand = Plus / Plus Query: 535 acctccactcggaattcctggtgtcaaaggagaaggtgcccttg 578 ||||||||||| | | | ||||||| ||||||||||| |||||| Sbjct: 29317427 acctccactcgcagtgcttggtgtcgaaggagaaggtccccttg 29317470
>gb|AC154764.2| Mus musculus BAC clone RP24-423N7 from chromosome 16, complete sequence Length = 159556 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 ttgttttttatttatattta 24 |||||||||||||||||||| Sbjct: 95969 ttgttttttatttatattta 95988
>gb|AC020580.11|AC020580 Arabidopsis thaliana chromosome 3 BAC F5E6 genomic sequence, complete sequence Length = 94704 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 acttgttttttatttatatt 22 |||||||||||||||||||| Sbjct: 58582 acttgttttttatttatatt 58563
>gb|AC007564.10| Homo sapiens 12 BAC RP11-513P18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 194397 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 ttgttttttatttatattta 24 |||||||||||||||||||| Sbjct: 151084 ttgttttttatttatattta 151103
>gb|AC109129.3| Homo sapiens 3 BAC RP11-784B9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 181158 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 572 gcccttggaaagatgatgat 591 |||||||||||||||||||| Sbjct: 32393 gcccttggaaagatgatgat 32374
>gb|AC093142.2| Homo sapiens chromosome 3 clone RP11-301D8, complete sequence Length = 210592 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 3 acttgttttttatttatatttatt 26 |||||| ||||||||||||||||| Sbjct: 117972 acttgtattttatttatatttatt 117949
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Length = 4585229 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 tgttttttatttatatttat 25 |||||||||||||||||||| Sbjct: 3140997 tgttttttatttatatttat 3140978
>dbj|AP004316.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0597G07 Length = 152928 Score = 40.1 bits (20), Expect = 8.7 Identities = 38/44 (86%) Strand = Plus / Plus Query: 535 acctccactcggaattcctggtgtcaaaggagaaggtgcccttg 578 ||||||||||| | | | ||||||| ||||||||||| |||||| Sbjct: 106116 acctccactcgcagtgcttggtgtcgaaggagaaggtccccttg 106159
>gb|AC154598.2| Mus musculus BAC clone RP23-356P6 from 14, complete sequence Length = 206646 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 ttttatttatatttattctg 29 |||||||||||||||||||| Sbjct: 187312 ttttatttatatttattctg 187331
>emb|CR848704.7| Zebrafish DNA sequence from clone CH211-246F9 in linkage group 19, complete sequence Length = 23201 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 tttatttatatttattctgc 30 |||||||||||||||||||| Sbjct: 10013 tttatttatatttattctgc 9994
>gb|AC146871.3| Xenopus tropicalis clone CH216-38E19, complete sequence Length = 163001 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 gttttttatttatatttatt 26 |||||||||||||||||||| Sbjct: 5246 gttttttatttatatttatt 5265
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome Length = 4791961 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 6 tgttttttatttatatttat 25 |||||||||||||||||||| Sbjct: 3173414 tgttttttatttatatttat 3173395
>gb|AE003721.3| Drosophila melanogaster chromosome 3R, section 59 of 118 of the complete sequence Length = 224889 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 ttttttatttatatttattc 27 |||||||||||||||||||| Sbjct: 169375 ttttttatttatatttattc 169394
>dbj|AP003026.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-21N9, complete sequence Length = 104802 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 ttgttttttatttatattta 24 |||||||||||||||||||| Sbjct: 53488 ttgttttttatttatattta 53507
>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome Length = 5411809 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 ttgttttttatttatatttattct 28 |||||||||||||| ||||||||| Sbjct: 2691137 ttgttttttatttagatttattct 2691114
>emb|CT033775.6| Mouse DNA sequence from clone RP24-145H15 on chromosome 13, complete sequence Length = 168176 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 86 caaatagctttacatccagaaaac 109 |||||||||||||||| ||||||| Sbjct: 152052 caaatagctttacatctagaaaac 152075
>emb|CR847961.12| Zebrafish DNA sequence from clone DKEY-154B7 in linkage group 5, complete sequence Length = 237051 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 5 ttgttttttatttatattta 24 |||||||||||||||||||| Sbjct: 193176 ttgttttttatttatattta 193195
>emb|AL929514.7| Zebrafish DNA sequence from clone CH211-187D9, complete sequence Length = 174473 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 gttttttatttatatttatt 26 |||||||||||||||||||| Sbjct: 154146 gttttttatttatatttatt 154127
>emb|CT033762.9| Mouse DNA sequence from clone RP24-144L17 on chromosome 14, complete sequence Length = 114799 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 gttttttatttatatttatt 26 |||||||||||||||||||| Sbjct: 48779 gttttttatttatatttatt 48798
>emb|CT030704.5| Mouse DNA sequence from clone RP24-317K15 on chromosome 14, complete sequence Length = 161533 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 tgcataaaacatgtcaacaa 88 |||||||||||||||||||| Sbjct: 8187 tgcataaaacatgtcaacaa 8168
>gb|U95626.1|HSU95626 Homo sapiens ccr2b (ccr2), ccr2a (ccr2), ccr5 (ccr5) and ccr6 (ccr6) genes, complete cds, and lactoferrin (lactoferrin) gene, partial cds, complete sequence Length = 143068 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 gcacacagccatcacggtca 242 |||||||||||||||||||| Sbjct: 132474 gcacacagccatcacggtca 132455
>dbj|AB086179.1| Anthoceros formosae chloroplast DNA, complete genome Length = 161162 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 ttttttatttatatttattc 27 |||||||||||||||||||| Sbjct: 93518 ttttttatttatatttattc 93499
>gb|L24384.1|SARRG18SX Sarcocystis gigantea 18S ribosomal RNA (18S rRNA) gene Length = 1830 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 553 tggtgtcaaaggagaaggtg 572 |||||||||||||||||||| Sbjct: 236 tggtgtcaaaggagaaggtg 255
>gb|U26736.1|CEU26736 Caenorhabditis elegans stomatin-like protein MEC-2 (mec-2) gene, complete cds Length = 18124 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 5 ttgttttttatttatatttattct 28 ||||||||||||||||||| |||| Sbjct: 4633 ttgttttttatttatattttttct 4610
>emb|AL663101.8| Mouse DNA sequence from clone RP23-205M7 on chromosome X, complete sequence Length = 216297 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 tttttatttatatttattct 28 |||||||||||||||||||| Sbjct: 91636 tttttatttatatttattct 91617
>gb|AC154098.6| Mus musculus chromosome 3, clone RP23-196L9, complete sequence Length = 201332 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 3 acttgttttttatttatatttatt 26 ||||||||||||||||| |||||| Sbjct: 49165 acttgttttttatttatttttatt 49188 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,080,960 Number of Sequences: 3902068 Number of extensions: 6080960 Number of successful extensions: 176814 Number of sequences better than 10.0: 102 Number of HSP's better than 10.0 without gapping: 102 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 176216 Number of HSP's gapped (non-prelim): 598 length of query: 641 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 618 effective length of database: 17,143,297,704 effective search space: 10594557981072 effective search space used: 10594557981072 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
