ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah61c01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK066777.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075L23, full insert sequence Length = 2082 Score = 357 bits (180), Expect = 3e-95 Identities = 378/444 (85%) Strand = Plus / Minus Query: 130 agttggctccacatggaaatttgggaaccgaagagccgcacactaactgatttcttggac 189 ||||||||||| | |||||||| ||||| ||||| |||||| || ||||| || || Sbjct: 1530 agttggctccataaggaaattttagaaccaaagagtcgcacatggacagatttttttgat 1471 Query: 190 cctgtcctaacaaactccagctccctcgataccccatgttcttcaaagctggaatcttca 249 ||| ||||||||| ||||||||||| ||||| |||| ||| || |||||| |||||| Sbjct: 1470 cctcccctaacaaattccagctcccttgatacaccattttcagcatagctgggttcttca 1411 Query: 250 agaaatgggaggtcaactgtaccctcagactccacattcttaagccatcctcggagcaaa 309 |||||||| | |||||| ||||||||| || |||||||| |||||||||| ||| || Sbjct: 1410 agaaatggaactgcaactgaaccctcagattcgacattctttagccatcctctgagtaag 1351 Query: 310 tagtttataacctcaggaacctcatcatgaggacagtgaccggcagggctgatttcataa 369 |||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| ||| Sbjct: 1350 tagtttataacctcaggaacctcatcatgagggcagtgaccagcaggactgatttcgtaa 1291 Query: 370 tagggtgcttctgggacctgctgcttgactctgataccccaataaggtctaacccaagga 429 || |||| |||||| |||||||| || ||| | ||||||||| |||||||||||||||| Sbjct: 1290 tacggtgattctggcacctgctgtttcactttaataccccaaataggtctaacccaagga 1231 Query: 430 tcttctttcccatacataagggaaatgggaatgtcctgcctttggcacctagatagtgcc 489 |||||| ||||||||||||| || |||||||| |||||||||||||||||||||| || Sbjct: 1230 tcttctctcccatacataagagatatgggaataccctgcctttggcacctagatagagct 1171 Query: 490 tcctgaaaggatatctggcccattggagcaaacataatggaggcaaatgatgcagcagct 549 || | |||||||| || ||| |||||||| |||||||||| |||||||||||||||||| Sbjct: 1170 tcttcgaaggatatttgtccctttggagcacacataatggatgcaaatgatgcagcagct 1111 Query: 550 gccgggtgttctgttgtctctata 573 || || |||| ||||||||||||| Sbjct: 1110 gctggatgttgtgttgtctctata 1087 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 10 ctttacataaagaataatgaatacaatatacaattgaagcttctaccatc 59 ||||| ||||||||||||||||||||||| | ||||||||||| |||| Sbjct: 1645 ctttaaataaagaataatgaatacaatatttgactgaagcttctaacatc 1596
>dbj|AK068937.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023003K12, full insert sequence Length = 1830 Score = 262 bits (132), Expect = 1e-66 Identities = 225/256 (87%) Strand = Plus / Minus Query: 318 aacctcaggaacctcatcatgaggacagtgaccggcagggctgatttcataatagggtgc 377 |||||||||||||||||||||||| |||||||| ||||| |||||||| ||||| |||| Sbjct: 1323 aacctcaggaacctcatcatgagggcagtgaccagcaggactgatttcgtaatacggtga 1264 Query: 378 ttctgggacctgctgcttgactctgataccccaataaggtctaacccaaggatcttcttt 437 |||||| |||||||| || ||| | ||||||||| |||||||||||||||||||||| | Sbjct: 1263 ttctggcacctgctgtttcactttaataccccaaataggtctaacccaaggatcttctct 1204 Query: 438 cccatacataagggaaatgggaatgtcctgcctttggcacctagatagtgcctcctgaaa 497 |||||||||||| || |||||||| |||||||||||||||||||||| || || | || Sbjct: 1203 cccatacataagagatatgggaataccctgcctttggcacctagatagagcttcttcgaa 1144 Query: 498 ggatatctggcccattggagcaaacataatggaggcaaatgatgcagcagctgccgggtg 557 |||||| || ||| |||||||| |||||||||| |||||||||||||||||||| || || Sbjct: 1143 ggatatttgtccctttggagcacacataatggatgcaaatgatgcagcagctgctggatg 1084 Query: 558 ttctgttgtctctata 573 || ||||||||||||| Sbjct: 1083 ttgtgttgtctctata 1068
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 176 bits (89), Expect = 5e-41 Identities = 143/161 (88%) Strand = Plus / Minus Query: 319 acctcaggaacctcatcatgaggacagtgaccggcagggctgatttcataatagggtgct 378 ||||||||||||||||||||||| |||||||| ||||| |||||||| ||||| |||| | Sbjct: 14372552 acctcaggaacctcatcatgagggcagtgaccagcaggactgatttcgtaatacggtgat 14372493 Query: 379 tctgggacctgctgcttgactctgataccccaataaggtctaacccaaggatcttctttc 438 ||||| |||||||| || ||| | ||||||||| |||||||||||||||||||||| || Sbjct: 14372492 tctggcacctgctgtttcactttaataccccaaataggtctaacccaaggatcttctctc 14372433 Query: 439 ccatacataagggaaatgggaatgtcctgcctttggcacct 479 ||||||||||| || |||||||| |||||||||||||||| Sbjct: 14372432 ccatacataagagatatgggaataccctgcctttggcacct 14372392 Score = 105 bits (53), Expect = 2e-19 Identities = 158/193 (81%) Strand = Plus / Minus Query: 130 agttggctccacatggaaatttgggaaccgaagagccgcacactaactgatttcttggac 189 ||||||||||| | |||||||| ||||| ||||| |||||| || ||||| || || Sbjct: 14374050 agttggctccataaggaaattttagaaccaaagagtcgcacatggacagatttttttgat 14373991 Query: 190 cctgtcctaacaaactccagctccctcgataccccatgttcttcaaagctggaatcttca 249 ||| ||||||||| ||||||||||| ||||| |||| ||| || |||||| |||||| Sbjct: 14373990 cctcccctaacaaattccagctcccttgatacaccattttcagcatagctgggttcttca 14373931 Query: 250 agaaatgggaggtcaactgtaccctcagactccacattcttaagccatcctcggagcaaa 309 |||||||| | |||||| ||||||||| || |||||||| |||||||||| ||| || Sbjct: 14373930 agaaatggaactgcaactgaaccctcagattcgacattctttagccatcctctgagtaag 14373871 Query: 310 tagtttataacct 322 ||||||||||||| Sbjct: 14373870 tagtttataacct 14373858 Score = 91.7 bits (46), Expect = 2e-15 Identities = 70/78 (89%) Strand = Plus / Minus Query: 496 aaggatatctggcccattggagcaaacataatggaggcaaatgatgcagcagctgccggg 555 |||||||| || ||| |||||||| |||||||||| |||||||||||||||||||| || Sbjct: 14372294 aaggatatttgtccctttggagcacacataatggatgcaaatgatgcagcagctgctgga 14372235 Query: 556 tgttctgttgtctctata 573 |||| ||||||||||||| Sbjct: 14372234 tgttgtgttgtctctata 14372217 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 10 ctttacataaagaataatgaatacaatatacaattgaagcttctaccatc 59 ||||| ||||||||||||||||||||||| | ||||||||||| |||| Sbjct: 14374165 ctttaaataaagaataatgaatacaatatttgactgaagcttctaacatc 14374116
>dbj|AP003574.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0526E12 Length = 150872 Score = 176 bits (89), Expect = 5e-41 Identities = 143/161 (88%) Strand = Plus / Minus Query: 319 acctcaggaacctcatcatgaggacagtgaccggcagggctgatttcataatagggtgct 378 ||||||||||||||||||||||| |||||||| ||||| |||||||| ||||| |||| | Sbjct: 100427 acctcaggaacctcatcatgagggcagtgaccagcaggactgatttcgtaatacggtgat 100368 Query: 379 tctgggacctgctgcttgactctgataccccaataaggtctaacccaaggatcttctttc 438 ||||| |||||||| || ||| | ||||||||| |||||||||||||||||||||| || Sbjct: 100367 tctggcacctgctgtttcactttaataccccaaataggtctaacccaaggatcttctctc 100308 Query: 439 ccatacataagggaaatgggaatgtcctgcctttggcacct 479 ||||||||||| || |||||||| |||||||||||||||| Sbjct: 100307 ccatacataagagatatgggaataccctgcctttggcacct 100267 Score = 105 bits (53), Expect = 2e-19 Identities = 158/193 (81%) Strand = Plus / Minus Query: 130 agttggctccacatggaaatttgggaaccgaagagccgcacactaactgatttcttggac 189 ||||||||||| | |||||||| ||||| ||||| |||||| || ||||| || || Sbjct: 101925 agttggctccataaggaaattttagaaccaaagagtcgcacatggacagatttttttgat 101866 Query: 190 cctgtcctaacaaactccagctccctcgataccccatgttcttcaaagctggaatcttca 249 ||| ||||||||| ||||||||||| ||||| |||| ||| || |||||| |||||| Sbjct: 101865 cctcccctaacaaattccagctcccttgatacaccattttcagcatagctgggttcttca 101806 Query: 250 agaaatgggaggtcaactgtaccctcagactccacattcttaagccatcctcggagcaaa 309 |||||||| | |||||| ||||||||| || |||||||| |||||||||| ||| || Sbjct: 101805 agaaatggaactgcaactgaaccctcagattcgacattctttagccatcctctgagtaag 101746 Query: 310 tagtttataacct 322 ||||||||||||| Sbjct: 101745 tagtttataacct 101733 Score = 91.7 bits (46), Expect = 2e-15 Identities = 70/78 (89%) Strand = Plus / Minus Query: 496 aaggatatctggcccattggagcaaacataatggaggcaaatgatgcagcagctgccggg 555 |||||||| || ||| |||||||| |||||||||| |||||||||||||||||||| || Sbjct: 100169 aaggatatttgtccctttggagcacacataatggatgcaaatgatgcagcagctgctgga 100110 Query: 556 tgttctgttgtctctata 573 |||| ||||||||||||| Sbjct: 100109 tgttgtgttgtctctata 100092 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 10 ctttacataaagaataatgaatacaatatacaattgaagcttctaccatc 59 ||||| ||||||||||||||||||||||| | ||||||||||| |||| Sbjct: 102040 ctttaaataaagaataatgaatacaatatttgactgaagcttctaacatc 101991
>dbj|AK062125.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-D07, full insert sequence Length = 395 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 10 ctttacataaagaataatgaatacaatatacaattgaagcttctaccatc 59 ||||| ||||||||||||||||||||||| | ||||||||||| |||| Sbjct: 183 ctttaaataaagaataatgaatacaatatttgactgaagcttctaacatc 134
>emb|AL513166.7| Human DNA sequence from clone RP11-261J10 on chromosome 1, complete sequence Length = 170817 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 423 ccaaggatcttctttcccata 443 ||||||||||||||||||||| Sbjct: 14279 ccaaggatcttctttcccata 14299
>gb|AC040926.5| Homo sapiens chromosome 8, clone RP11-776K3, complete sequence Length = 204177 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 16 ataaagaataatgaatacaat 36 ||||||||||||||||||||| Sbjct: 80854 ataaagaataatgaatacaat 80874
>ref|NM_105370.1| Arabidopsis thaliana ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein-tyrosine kinase AT1G67000 mRNA, complete cds Length = 2614 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 tcaaagctggaatcttcaag 251 |||||||||||||||||||| Sbjct: 2588 tcaaagctggaatcttcaag 2607
>gb|AC095688.7| Rattus norvegicus 2 BAC CH230-9C20 (Children's Hospital Oakland Research Institute) complete sequence Length = 176590 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 cataaagaataatgaataca 34 |||||||||||||||||||| Sbjct: 40448 cataaagaataatgaataca 40467
>gb|AC007152.9| Arabidopsis thaliana chromosome I BAC F1O19 genomic sequence, complete sequence Length = 90387 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 tcaaagctggaatcttcaag 251 |||||||||||||||||||| Sbjct: 33946 tcaaagctggaatcttcaag 33927
>emb|BX530407.26| Zebrafish DNA sequence from clone DKEY-83M22 in linkage group 9, complete sequence Length = 292409 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 479 tagatagtgcctcctgaaag 498 |||||||||||||||||||| Sbjct: 288408 tagatagtgcctcctgaaag 288427
>dbj|AP007167.1| Aspergillus oryzae RIB40 genomic DNA, SC020 Length = 1824958 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 385 acctgctgcttgactctgat 404 |||||||||||||||||||| Sbjct: 1708641 acctgctgcttgactctgat 1708622
>ref|XM_685321.1| PREDICTED: Danio rerio similar to Heat shock 10kD protein 1 (chaperonin 10) (LOC573148), mRNA Length = 904 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 479 tagatagtgcctcctgaaag 498 |||||||||||||||||||| Sbjct: 808 tagatagtgcctcctgaaag 827
>gb|DP000049.1| Dasypus novemcinctus target 126 genomic scaffold Length = 405580 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 ttacataaagaataatgaat 31 |||||||||||||||||||| Sbjct: 274987 ttacataaagaataatgaat 274968
>gb|CP000043.1| Bacillus cereus E33L plasmid pE33L8, complete sequence Length = 8191 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 25 aatgaatacaatatacaatt 44 |||||||||||||||||||| Sbjct: 3705 aatgaatacaatatacaatt 3686
>emb|BX890578.6| Mouse DNA sequence from clone RP23-72P20 on chromosome X, complete sequence Length = 161519 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 386 cctgctgcttgactctgata 405 |||||||||||||||||||| Sbjct: 159371 cctgctgcttgactctgata 159390
>gb|AC109637.3| Homo sapiens BAC clone RP11-325A18 from 2, complete sequence Length = 17704 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 aaagaataatgaatacaata 37 |||||||||||||||||||| Sbjct: 17040 aaagaataatgaatacaata 17059
>gb|AC020547.7| Homo sapiens BAC clone RP11-134F3 from 2, complete sequence Length = 167739 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 aaagaataatgaatacaata 37 |||||||||||||||||||| Sbjct: 1336 aaagaataatgaatacaata 1355
>emb|BX571722.18| Zebrafish DNA sequence from clone DKEY-96O13 in linkage group 9, complete sequence Length = 228214 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 479 tagatagtgcctcctgaaag 498 |||||||||||||||||||| Sbjct: 37549 tagatagtgcctcctgaaag 37530
>emb|CR394552.9| Zebrafish DNA sequence from clone DKEYP-109B10 in linkage group 25, complete sequence Length = 196037 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 caaatagtttataacctcag 325 |||||||||||||||||||| Sbjct: 151226 caaatagtttataacctcag 151245
>gb|AE015927.1| Clostridium tetani E88, complete genome Length = 2799251 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 aaagaataatgaatacaata 37 |||||||||||||||||||| Sbjct: 2220951 aaagaataatgaatacaata 2220932
>emb|AL672069.10| Mouse DNA sequence from clone RP23-343O22 on chromosome X, complete sequence Length = 161147 Score = 40.1 bits (20), Expect = 7.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 386 cctgctgcttgactctgata 405 |||||||||||||||||||| Sbjct: 158999 cctgctgcttgactctgata 159018 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,140,592 Number of Sequences: 3902068 Number of extensions: 5140592 Number of successful extensions: 94959 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 94864 Number of HSP's gapped (non-prelim): 92 length of query: 573 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 550 effective length of database: 17,143,297,704 effective search space: 9428813737200 effective search space used: 9428813737200 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
