ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah60m20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY103745.1| Zea mays PCO097601 mRNA sequence 109 9e-21
2ref|XM_467690.1| Oryza sativa (japonica cultivar-group), mRNA 96 1e-16
3dbj|AK099699.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 1e-16
4gb|BT016893.1| Zea mays clone Contig726 mRNA sequence 94 5e-16
5dbj|AK102187.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 5e-13
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
7dbj|AP005112.3| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
8dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
9dbj|AP004027.3| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
10gb|BT018372.1| Zea mays clone EL01N0306F02.d mRNA sequence 68 3e-08
11gb|AY106204.1| Zea mays PCO074973 mRNA sequence 66 1e-07
12ref|NM_187920.1| Oryza sativa (japonica cultivar-group), predic... 40 7.0
13gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 40 7.0
14gb|AY659938.1| Oryza sativa (japonica cultivar-group) RAA1 (RAA1... 40 7.0
15gb|AC005518.2| Homo sapiens PAC clone RP4-777G9 from 7, complete... 40 7.0
16emb|AL139810.16| Human DNA sequence from clone RP11-576G22 on ch... 40 7.0
17emb|AL136164.8| Human DNA sequence from clone RP3-331H24 on chro... 40 7.0
18gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome 40 7.0
19dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
20gb|AC020699.6| Homo sapiens BAC clone RP11-131K17 from 4, comple... 40 7.0
21gb|AC139931.5| Homo sapiens 12 BAC RP11-43A22 (Roswell Park Canc... 40 7.0
22dbj|AP002525.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.0
23gb|BC040858.1| Homo sapiens, clone IMAGE:5528391, mRNA 40 7.0
24emb|AL773518.3| Mouse DNA sequence from clone RP24-231F12 on chr... 40 7.0
25dbj|AK070626.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.0
26dbj|AK058670.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.0
27gb|AC132435.3| Mus musculus BAC clone RP23-223L12 from 10, compl... 40 7.0

>gb|AY103745.1| Zea mays PCO097601 mRNA sequence
          Length = 1567

 Score =  109 bits (55), Expect = 9e-21
 Identities = 139/167 (83%)
 Strand = Plus / Minus

                                                                        
Query: 351  gaatcgaaggctgacctccagtcctcacctgggcggccgggtgtccgagggctctcagct 410
            ||||| ||||| ||||||||||||||||||| |||||  ||||| |||||||||||| ||
Sbjct: 1153 gaatcaaaggcagacctccagtcctcacctgagcggcttggtgttcgagggctctcaact 1094

                                                                        
Query: 411  tccggactgtcatttgaataagaggaagcagcagctcgattgtcatggatactaagttgg 470
            || |  |||||||| |||||||||||| |||  || |  || ||||||||||| ||||| 
Sbjct: 1093 tcagtgctgtcattagaataagaggaaacagatgccctgttatcatggatactgagttga 1034

                                                           
Query: 471  cgtgtgagctttgacaacagagatgattgcttctggtacttttccct 517
            || || || |||||||  ||||||||||| || |||||||| |||||
Sbjct: 1033 cgagtaagttttgacaggagagatgattgtttttggtacttctccct 987



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 67/81 (82%)
 Strand = Plus / Minus

                                                                        
Query: 190  tcatggatactaatcagcacgactagtatctcggtggcgctggcggcaaccgatttggcg 249
            ||||| |||| ||||||||||| |||||| | || || ||||| |||||||| || || |
Sbjct: 1338 tcatgaataccaatcagcacgattagtattttggcggtgctggtggcaaccggttcggtg 1279

                                 
Query: 250  tgcgtcggctgctggagttgg 270
            |||| |||||||  |||||||
Sbjct: 1278 tgcgccggctgccagagttgg 1258



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 18   ctatatatttctataaacaactc 40
            |||||||||||||||||||||||
Sbjct: 1507 ctatatatttctataaacaactc 1485



 Score = 44.1 bits (22), Expect = 0.45
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 293  gcgactatcggcacttctcgaccttgattc 322
            ||||| ||| ||||||||||||||||||||
Sbjct: 1220 gcgaccatcagcacttctcgaccttgattc 1191



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>ref|XM_467690.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3215

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 149/182 (81%), Gaps = 3/182 (1%)
 Strand = Plus / Minus

                                                                        
Query: 338  gccatttgctgcagaatcgaaggctgacctccagtcctcacctgggcggccgggtgtccg 397
            |||||||| |||||||||||| || |||||||||||||||||||   |||| |  |||||
Sbjct: 2700 gccatttgatgcagaatcgaacgcagacctccagtcctcacctgactggccagaggtccg 2641

                                                                        
Query: 398  agggct---ctcagcttccggactgtcatttgaataagaggaagcagcagctcgattgtc 454
             |||||   ||||||| | | ||| ||||| | ||| || | | ||| ||||| ||||||
Sbjct: 2640 tgggctactctcagctccagaactatcattggtatacgatgcaacagaagctctattgtc 2581

                                                                        
Query: 455  atggatactaagttggcgtgtgagctttgacaacagagatgattgcttctggtacttttc 514
            |||||||||||| || || || ||||||||||| ||||||||||| || |||||||| ||
Sbjct: 2580 atggatactaagctgacgagtaagctttgacaatagagatgattgtttttggtacttctc 2521

              
Query: 515  cc 516
            ||
Sbjct: 2520 cc 2519



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>dbj|AK099699.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074K16, full
            insert sequence
          Length = 3215

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 149/182 (81%), Gaps = 3/182 (1%)
 Strand = Plus / Minus

                                                                        
Query: 338  gccatttgctgcagaatcgaaggctgacctccagtcctcacctgggcggccgggtgtccg 397
            |||||||| |||||||||||| || |||||||||||||||||||   |||| |  |||||
Sbjct: 2700 gccatttgatgcagaatcgaacgcagacctccagtcctcacctgactggccagaggtccg 2641

                                                                        
Query: 398  agggct---ctcagcttccggactgtcatttgaataagaggaagcagcagctcgattgtc 454
             |||||   ||||||| | | ||| ||||| | ||| || | | ||| ||||| ||||||
Sbjct: 2640 tgggctactctcagctccagaactatcattggtatacgatgcaacagaagctctattgtc 2581

                                                                        
Query: 455  atggatactaagttggcgtgtgagctttgacaacagagatgattgcttctggtacttttc 514
            |||||||||||| || || || ||||||||||| ||||||||||| || |||||||| ||
Sbjct: 2580 atggatactaagctgacgagtaagctttgacaatagagatgattgtttttggtacttctc 2521

              
Query: 515  cc 516
            ||
Sbjct: 2520 cc 2519



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>gb|BT016893.1| Zea mays clone Contig726 mRNA sequence
          Length = 858

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 137/167 (82%)
 Strand = Plus / Plus

                                                                       
Query: 351 gaatcgaaggctgacctccagtcctcacctgggcggccgggtgtccgagggctctcagct 410
           ||||| || |||||||||||||||||||||| ||||   ||||| ||||||||||| |||
Sbjct: 375 gaatcaaaagctgacctccagtcctcacctgagcgggttggtgttcgagggctctcggct 434

                                                                       
Query: 411 tccggactgtcatttgaataagaggaagcagcagctcgattgtcatggatactaagttgg 470
           || |   ||||||| |||||||||||| |||  || |  || ||||||||||| ||||| 
Sbjct: 435 tcagtggtgtcattagaataagaggaaacagatgccctgttatcatggatactgagttga 494

                                                          
Query: 471 cgtgtgagctttgacaacagagatgattgcttctggtacttttccct 517
           || || || |||||||  ||||||||||| || |||||||| |||||
Sbjct: 495 cgagtaagttttgacaggagagatgattgtttttggtacttctccct 541



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 68/81 (83%)
 Strand = Plus / Plus

                                                                       
Query: 190 tcatggatactaatcagcacgactagtatctcggtggcgctggcggcaaccgatttggcg 249
           ||||| |||| ||||||||||| |||||| | || || ||||| |||||||| ||||| |
Sbjct: 190 tcatgaataccaatcagcacgattagtattttggcggtgctggtggcaaccggtttggtg 249

                                
Query: 250 tgcgtcggctgctggagttgg 270
           |||| |||||||  |||||||
Sbjct: 250 tgcgccggctgccagagttgg 270



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>dbj|AK102187.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086P03, full
            insert sequence
          Length = 3307

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 57/62 (91%)
 Strand = Plus / Minus

                                                                        
Query: 351  gaatcgaaggctgacctccagtcctcacctgggcggccgggtgtccgagggctctcagct 410
            ||||||||||| |||||||| |||||||||||||||  ||||||||| ||||||||||||
Sbjct: 2795 gaatcgaaggcagacctccaatcctcacctgggcggttgggtgtccgggggctctcagct 2736

              
Query: 411  tc 412
            ||
Sbjct: 2735 tc 2734



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                        
Query: 450  ttgtcatggatactaagttggcgtgtgagctttgacaacagagatgattgcttctggtac 509
            |||||||||| ||||||||| || || ||||||||||| ||||||||||| || ||||| 
Sbjct: 2702 ttgtcatggacactaagttgacgggtaagctttgacaagagagatgattgtttttggtat 2643

                    
Query: 510  ttttccct 517
            ||||||||
Sbjct: 2642 ttttccct 2635



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                
Query: 146  atcagaaacagagcgtg-tgcctagcaagaatacat 180
            ||||||||||| ||||| ||||||||||||||||||
Sbjct: 3023 atcagaaacagggcgtggtgcctagcaagaatacat 2988



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 62/75 (82%)
 Strand = Plus / Minus

                                                                        
Query: 196  atactaatcagcacgactagtatctcggtggcgctggcggcaaccgatttggcgtgcgtc 255
            ||||||||||||  || |||||| | || || ||||| || ||||| ||||| || ||||
Sbjct: 2965 atactaatcagcgtgattagtatttaggaggtgctggaggtaaccggtttggagtacgtc 2906

                           
Query: 256  ggctgctggagttgg 270
            |||||| ||||||||
Sbjct: 2905 ggctgccggagttgg 2891



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 21   tatatttctataaacaactc 40
            ||||||||||||||||||||
Sbjct: 3149 tatatttctataaacaactc 3130



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 65/74 (87%)
 Strand = Plus / Plus

                                                                            
Query: 443      agctcgattgtcatggatactaagttggcgtgtgagctttgacaacagagatgattgctt 502
                ||||| |||||||||||||||||| || || || ||||||||||| ||||||||||| ||
Sbjct: 30881989 agctctattgtcatggatactaagctgacgagtaagctttgacaatagagatgattgttt 30882048

                              
Query: 503      ctggtacttttccc 516
                 |||||||| ||||
Sbjct: 30882049 ttggtacttctccc 30882062



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                            
Query: 338      gccatttgctgcagaatcgaaggctgacctccagtcctcacctg 381
                |||||||| |||||||||||| || |||||||||||||||||||
Sbjct: 30880683 gccatttgatgcagaatcgaacgcagacctccagtcctcacctg 30880726



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>dbj|AP005112.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0684F11
          Length = 147731

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 65/74 (87%)
 Strand = Plus / Plus

                                                                         
Query: 443   agctcgattgtcatggatactaagttggcgtgtgagctttgacaacagagatgattgctt 502
             ||||| |||||||||||||||||| || || || ||||||||||| ||||||||||| ||
Sbjct: 65566 agctctattgtcatggatactaagctgacgagtaagctttgacaatagagatgattgttt 65625

                           
Query: 503   ctggtacttttccc 516
              |||||||| ||||
Sbjct: 65626 ttggtacttctccc 65639



 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 41/44 (93%)
 Strand = Plus / Plus

                                                         
Query: 338   gccatttgctgcagaatcgaaggctgacctccagtcctcacctg 381
             |||||||| |||||||||||| || |||||||||||||||||||
Sbjct: 64260 gccatttgatgcagaatcgaacgcagacctccagtcctcacctg 64303



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                       
Query: 351     gaatcgaaggctgacctccagtcctcacctgggcggccgggtgtccgagggctctc 406
               ||||||||||| |||||||| |||||||||||||||  ||||||||| ||||||||
Sbjct: 7680299 gaatcgaaggcagacctccaatcctcacctgggcggttgggtgtccgggggctctc 7680244



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                           
Query: 450     ttgtcatggatactaagttggcgtgtgagctttgacaacagagatgattgcttctggtac 509
               |||||||||| ||||||||| || || ||||||||||| ||||||||||| || ||||| 
Sbjct: 7679958 ttgtcatggacactaagttgacgggtaagctttgacaagagagatgattgtttttggtat 7679899

                       
Query: 510     ttttccct 517
               ||||||||
Sbjct: 7679898 ttttccct 7679891



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 63/75 (84%)
 Strand = Plus / Minus

                                                                           
Query: 196     atactaatcagcacgactagtatctcggtggcgctggcggcaaccgatttggcgtgcgtc 255
               ||||||||||||  || |||||| | || || ||||| || ||||| ||||| |||||||
Sbjct: 7680469 atactaatcagcgtgattagtatttaggaggtgctggaggtaaccggtttggagtgcgtc 7680410

                              
Query: 256     ggctgctggagttgg 270
               |||||| ||||||||
Sbjct: 7680409 ggctgccggagttgg 7680395



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                   
Query: 146     atcagaaacagagcgtg-tgcctagcaagaatacat 180
               ||||||||||| ||||| ||||||||||||||||||
Sbjct: 7680527 atcagaaacagggcgtggtgcctagcaagaatacat 7680492



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 21      tatatttctataaacaactc 40
               ||||||||||||||||||||
Sbjct: 7680653 tatatttctataaacaactc 7680634



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>dbj|AP004027.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OJ1136_C11
          Length = 124827

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 51/56 (91%)
 Strand = Plus / Minus

                                                                      
Query: 351    gaatcgaaggctgacctccagtcctcacctgggcggccgggtgtccgagggctctc 406
              ||||||||||| |||||||| |||||||||||||||  ||||||||| ||||||||
Sbjct: 103554 gaatcgaaggcagacctccaatcctcacctgggcggttgggtgtccgggggctctc 103499



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                          
Query: 450    ttgtcatggatactaagttggcgtgtgagctttgacaacagagatgattgcttctggtac 509
              |||||||||| ||||||||| || || ||||||||||| ||||||||||| || ||||| 
Sbjct: 103213 ttgtcatggacactaagttgacgggtaagctttgacaagagagatgattgtttttggtat 103154

                      
Query: 510    ttttccct 517
              ||||||||
Sbjct: 103153 ttttccct 103146



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 63/75 (84%)
 Strand = Plus / Minus

                                                                          
Query: 196    atactaatcagcacgactagtatctcggtggcgctggcggcaaccgatttggcgtgcgtc 255
              ||||||||||||  || |||||| | || || ||||| || ||||| ||||| |||||||
Sbjct: 103724 atactaatcagcgtgattagtatttaggaggtgctggaggtaaccggtttggagtgcgtc 103665

                             
Query: 256    ggctgctggagttgg 270
              |||||| ||||||||
Sbjct: 103664 ggctgccggagttgg 103650



 Score = 48.1 bits (24), Expect = 0.029
 Identities = 34/36 (94%), Gaps = 1/36 (2%)
 Strand = Plus / Minus

                                                  
Query: 146    atcagaaacagagcgtg-tgcctagcaagaatacat 180
              ||||||||||| ||||| ||||||||||||||||||
Sbjct: 103782 atcagaaacagggcgtggtgcctagcaagaatacat 103747



 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 21     tatatttctataaacaactc 40
              ||||||||||||||||||||
Sbjct: 103908 tatatttctataaacaactc 103889



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>gb|BT018372.1| Zea mays clone EL01N0306F02.d mRNA sequence
          Length = 1254

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                       
Query: 351 gaatcgaaggctgacctccagtcctcacctgggcggccgggtgtccgagggctctcagct 410
           ||||| ||||| ||||||||||||||||||| |||||  ||||| |||||||||||| ||
Sbjct: 916 gaatcaaaggcagacctccagtcctcacctgagcggcttggtgttcgagggctctcaact 857

             
Query: 411 tc 412
           ||
Sbjct: 856 tc 855



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 67/81 (82%)
 Strand = Plus / Minus

                                                                        
Query: 190  tcatggatactaatcagcacgactagtatctcggtggcgctggcggcaaccgatttggcg 249
            ||||| |||| ||||||||||| |||||| | || || ||||| |||||||| || || |
Sbjct: 1101 tcatgaataccaatcagcacgattagtattttggcggggctggtggcaaccggttcggtg 1042

                                 
Query: 250  tgcgtcggctgctggagttgg 270
            |||| |||||||  |||||||
Sbjct: 1041 tgcgccggctgccagagttgg 1021



 Score = 44.1 bits (22), Expect = 0.45
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 293 gcgactatcggcacttctcgaccttgattc 322
           ||||| ||| ||||||||||||||||||||
Sbjct: 983 gcgaccatcagcacttctcgaccttgattc 954



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>gb|AY106204.1| Zea mays PCO074973 mRNA sequence
          Length = 717

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                       
Query: 444 gctcgattgtcatggatactaagttggcgtgtgagctttgacaacagagatgattgcttc 503
           |||| ||||||||| || || |||||||| |||||||||||||| || |||||||| || 
Sbjct: 559 gctctattgtcatgaatgctgagttggcgagtgagctttgacaagagggatgattgtttt 500

                        
Query: 504 tggtacttttccc 516
           ||||| |||||||
Sbjct: 499 tggtatttttccc 487



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>ref|NM_187920.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 330

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 122 ctccaccaatctcaccaccc 141
           ||||||||||||||||||||
Sbjct: 48  ctccaccaatctcaccaccc 29



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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 222     ggtggcgctggcggcaaccg 241
               ||||||||||||||||||||
Sbjct: 2802126 ggtggcgctggcggcaaccg 2802145



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>gb|AY659938.1| Oryza sativa (japonica cultivar-group) RAA1 (RAA1) mRNA, complete
           cds
          Length = 729

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 122 ctccaccaatctcaccaccc 141
           ||||||||||||||||||||
Sbjct: 100 ctccaccaatctcaccaccc 81



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>gb|AC005518.2| Homo sapiens PAC clone RP4-777G9 from 7, complete sequence
          Length = 89097

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 483   gacaacagagatgattgctt 502
             ||||||||||||||||||||
Sbjct: 51575 gacaacagagatgattgctt 51556



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>emb|AL139810.16| Human DNA sequence from clone RP11-576G22 on chromosome Xp11.23-11.4
             Contains the 5' end of a novel gene, complete sequence
          Length = 27299

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 173   gaatacataataataaatca 192
             ||||||||||||||||||||
Sbjct: 26365 gaatacataataataaatca 26384



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>emb|AL136164.8| Human DNA sequence from clone RP3-331H24 on chromosome 6 Contains the
             5' end of a novel gene, the gene for a novel protein
             similar to opioid growth factor receptor and a CpG island,
             complete sequence
          Length = 108253

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 20    atatatttctataaacaactctgg 43
             |||||||||||||||| |||||||
Sbjct: 20311 atatatttctataaactactctgg 20334



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>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome
          Length = 3046682

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 329    cggggctgggccatttgctgcaga 352
              ||||||||||||| ||||||||||
Sbjct: 771205 cggggctgggccacttgctgcaga 771228



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 122     ctccaccaatctcaccaccc 141
               ||||||||||||||||||||
Sbjct: 8585799 ctccaccaatctcaccaccc 8585818



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>gb|AC020699.6| Homo sapiens BAC clone RP11-131K17 from 4, complete sequence
          Length = 186961

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 174   aatacataataataaatcat 193
             ||||||||||||||||||||
Sbjct: 52428 aatacataataataaatcat 52447



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>gb|AC139931.5| Homo sapiens 12 BAC RP11-43A22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 94635

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 174   aatacataataataaatcat 193
             ||||||||||||||||||||
Sbjct: 56035 aatacataataataaatcat 56054



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>dbj|AP002525.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0462H08
          Length = 139152

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 122   ctccaccaatctcaccaccc 141
             ||||||||||||||||||||
Sbjct: 17994 ctccaccaatctcaccaccc 18013



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>gb|BC040858.1| Homo sapiens, clone IMAGE:5528391, mRNA
          Length = 2228

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 173  gaatacataataataaatca 192
            ||||||||||||||||||||
Sbjct: 2170 gaatacataataataaatca 2189



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>emb|AL773518.3| Mouse DNA sequence from clone RP24-231F12 on chromosome 4, complete
             sequence
          Length = 205765

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 7     gaattgattnactatatatttct 29
             ||||||||| |||||||||||||
Sbjct: 15216 gaattgatttactatatatttct 15238



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>dbj|AK070626.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056F13, full
           insert sequence
          Length = 786

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 122 ctccaccaatctcaccaccc 141
           ||||||||||||||||||||
Sbjct: 144 ctccaccaatctcaccaccc 125



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>dbj|AK058670.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-H02,
          full insert sequence
          Length = 239

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 21 tatatttctataaacaactc 40
          ||||||||||||||||||||
Sbjct: 78 tatatttctataaacaactc 59



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>gb|AC132435.3| Mus musculus BAC clone RP23-223L12 from 10, complete sequence
          Length = 198383

 Score = 40.1 bits (20), Expect = 7.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 431    agaggaagcagcagctcgattgtcatgg 458
              |||||||||||||||| || ||||||||
Sbjct: 113406 agaggaagcagcagctggaatgtcatgg 113433


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,309,680
Number of Sequences: 3902068
Number of extensions: 4309680
Number of successful extensions: 83693
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83474
Number of HSP's gapped (non-prelim): 217
length of query: 517
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 494
effective length of database: 17,143,297,704
effective search space: 8468789065776
effective search space used: 8468789065776
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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