ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah60l22 |
|---|---|
| Clone Library Name | barley_pub |
>YAUB_SCHPO (Q10166) Hypothetical UPF0012 protein C26A3.11 in chromosome I (EC| 3.5.-.-) Length = 322 Score = 70.9 bits (172), Expect = 3e-12 Identities = 31/73 (42%), Positives = 51/73 (69%) Frame = -3 Query: 624 NQLFVATCSPARDPNSQSDFVAWGHSSLIGPFGEVLAAAGHEDATVIGEIDLSLIQAVRE 445 N++FVA C+PARD N+ D+ +WGHS+++ PFG+V+A + + V +ID S++ R Sbjct: 241 NEMFVACCAPARDMNA--DYHSWGHSTVVDPFGKVIATTDEKPSIVYADIDPSVMSTARN 298 Query: 444 NLPLETQGRGDLY 406 ++P+ TQ R D+Y Sbjct: 299 SVPIYTQRRFDVY 311
>NIT3_YEAST (P49954) Probable hydrolase NIT3 (EC 3.5.-.-)| Length = 291 Score = 62.4 bits (150), Expect = 1e-09 Identities = 30/73 (41%), Positives = 48/73 (65%) Frame = -3 Query: 624 NQLFVATCSPARDPNSQSDFVAWGHSSLIGPFGEVLAAAGHEDATVIGEIDLSLIQAVRE 445 NQ++V CSPAR N QS + A+GHS ++ P G+++A AG + + E+D +I++ R+ Sbjct: 215 NQVYVMLCSPAR--NLQSSYHAYGHSIVVDPRGKIVAEAGEGEEIIYAELDPEVIESFRQ 272 Query: 444 NLPLETQGRGDLY 406 +PL Q R D+Y Sbjct: 273 AVPLTKQRRFDVY 285
>NFT1_DROME (O76464) Nitrilase and fragile histidine triad fusion protein| NitFhit (NFT-1 protein) [Includes: Bis(5'-adenosyl)-triphosphatase (EC 3.6.1.29) (Diadenosine 5',5'''-P1,P3-triphosphate hydrolase) (Dinucleosidetriphosphatase) (AP3A hydrolase) (AP Length = 460 Score = 45.8 bits (107), Expect = 1e-04 Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 1/55 (1%) Frame = -3 Query: 561 AWGHSSLIGPFGEVLAAAGHEDATV-IGEIDLSLIQAVRENLPLETQGRGDLYRL 400 +WGHS ++ P+G VLA ++ + E+DLS++Q++ + +P R D+Y L Sbjct: 248 SWGHSMIVSPWGNVLADCSEQELDIGTAEVDLSVLQSLYQTMPCFEHRRNDIYAL 302
>NFT1_CAEEL (O76463) Nitrilase and fragile histidine triad fusion protein| NitFhit [Includes: Bis(5'-adenosyl)-triphosphatase (EC 3.6.1.29) (Diadenosine 5',5'''-P1,P3-triphosphate hydrolase) (Dinucleosidetriphosphatase) (AP3A hydrolase) (AP3Aase); Nitrilas Length = 440 Score = 45.4 bits (106), Expect = 1e-04 Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 2/77 (2%) Frame = -3 Query: 624 NQLFVATCSP--ARDPNSQSDFVAWGHSSLIGPFGEVLAAAGHEDATVIGEIDLSLIQAV 451 NQ +V + A +P QS +GHS ++ P+G V+A EIDLS + + Sbjct: 215 NQCYVVAAAQTGAHNPKRQS----YGHSMVVDPWGAVVAQCSERVDMCFAEIDLSYVDTL 270 Query: 450 RENLPLETQGRGDLYRL 400 RE P+ + R DLY L Sbjct: 271 REMQPVFSHRRSDLYTL 287
>NIT2_YEAST (P47016) Probable hydrolase NIT2 (EC 3.5.-.-)| Length = 307 Score = 44.7 bits (104), Expect = 2e-04 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 6/58 (10%) Frame = -3 Query: 561 AWGHSSLIGPFGEVLAAAGHEDATVIG------EIDLSLIQAVRENLPLETQGRGDLY 406 +WGHS +I P+G+++A H D + +G ++D L+Q +R +PL Q R DL+ Sbjct: 252 SWGHSMVIDPWGKIIA---HADPSTVGPQLILADLDRELLQEIRNKMPLWNQRRDDLF 306
>NIT1_RAT (Q7TQ94) Nitrilase homolog 1 (EC 3.5.-.-)| Length = 292 Score = 42.0 bits (97), Expect = 0.001 Identities = 18/52 (34%), Positives = 31/52 (59%) Frame = -3 Query: 561 AWGHSSLIGPFGEVLAAAGHEDATVIGEIDLSLIQAVRENLPLETQGRGDLY 406 ++GHS ++ P+G V+A+ + IDL +Q +R++LP+ R DLY Sbjct: 233 SYGHSMVVDPWGTVVASCSEGPGLCLARIDLHFLQQMRQHLPVFQHRRPDLY 284
>NIT1_MOUSE (Q8VDK1) Nitrilase homolog 1 (EC 3.5.-.-)| Length = 323 Score = 41.2 bits (95), Expect = 0.003 Identities = 18/52 (34%), Positives = 30/52 (57%) Frame = -3 Query: 561 AWGHSSLIGPFGEVLAAAGHEDATVIGEIDLSLIQAVRENLPLETQGRGDLY 406 ++GHS ++ P+G V+A + IDL +Q +R++LP+ R DLY Sbjct: 264 SYGHSMVVDPWGTVVARCSEGPGLCLARIDLHFLQQMRQHLPVFQHRRPDLY 315
>NIT1_HUMAN (Q86X76) Nitrilase homolog 1 (EC 3.5.-.-)| Length = 327 Score = 39.3 bits (90), Expect = 0.010 Identities = 17/52 (32%), Positives = 30/52 (57%) Frame = -3 Query: 561 AWGHSSLIGPFGEVLAAAGHEDATVIGEIDLSLIQAVRENLPLETQGRGDLY 406 ++GHS ++ P+G V+A + IDL+ ++ +R +LP+ R DLY Sbjct: 268 SYGHSMVVDPWGTVVARCSEGPGLCLARIDLNYLRQLRRHLPVFQHRRPDLY 319
>Y601_SYNY3 (P55175) Hypothetical UPF0012 protein sll0601 (EC 3.5.-.-)| Length = 272 Score = 35.4 bits (80), Expect = 0.14 Identities = 15/40 (37%), Positives = 25/40 (62%) Frame = -3 Query: 555 GHSSLIGPFGEVLAAAGHEDATVIGEIDLSLIQAVRENLP 436 GH+ +I P+G +LA AG + I EI+ ++ VR+ +P Sbjct: 225 GHAMIIDPWGVILADAGEKPGLAIAEINPDRLKQVRQQMP 264
>YBEM_ECOLI (P39874) Hypothetical UPF0012 protein ybeM (EC 3.5.-.-)| Length = 262 Score = 33.1 bits (74), Expect = 0.70 Identities = 15/41 (36%), Positives = 23/41 (56%) Frame = -3 Query: 555 GHSSLIGPFGEVLAAAGHEDATVIGEIDLSLIQAVRENLPL 433 G S +I PFG +AAA A ++ E+ ++ VR LP+ Sbjct: 210 GQSRIIDPFGVTIAAASEMPALIMAEVTPERVRQVRAQLPV 250
>YBEM_ECO57 (P58054) Hypothetical UPF0012 protein ybeM (EC 3.5.-.-)| Length = 262 Score = 33.1 bits (74), Expect = 0.70 Identities = 15/41 (36%), Positives = 23/41 (56%) Frame = -3 Query: 555 GHSSLIGPFGEVLAAAGHEDATVIGEIDLSLIQAVRENLPL 433 G S +I PFG +AAA A ++ E+ ++ VR LP+ Sbjct: 210 GQSRIIDPFGVTIAAASEMPALIMAEVTPERVRQVRAQLPV 250
>YAG5_STAAU (P55177) Hypothetical UPF0012 protein in agr operon (EC 3.5.-.-)| (ORF 5) Length = 261 Score = 32.7 bits (73), Expect = 0.91 Identities = 19/74 (25%), Positives = 37/74 (50%) Frame = -3 Query: 624 NQLFVATCSPARDPNSQSDFVAWGHSSLIGPFGEVLAAAGHEDATVIGEIDLSLIQAVRE 445 N + T S D N++ GHS +I P G+++ + +++L+ ++ RE Sbjct: 192 NMFVIGTNSTGFDGNTEYA----GHSIVINPNGDLVGELNESADILTVDLNLNEVEQQRE 247 Query: 444 NLPLETQGRGDLYR 403 N+P+ + DLY+ Sbjct: 248 NIPVFKSIKLDLYK 261
>AMIE_BACST (Q9RQ17) Aliphatic amidase (EC 3.5.1.4) (Acylamide amidohydrolase)| (Wide spectrum amidase) Length = 348 Score = 31.2 bits (69), Expect = 2.6 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 1/77 (1%) Frame = -3 Query: 624 NQLFVATCSPARDPNSQSDFVAWGHSSLIGPFGEVLAAAGHEDATV-IGEIDLSLIQAVR 448 N ++VA + S F GHS++IG G L G E+ + EI LS I+ R Sbjct: 211 NNVYVAVANATGFDGVYSYF---GHSAIIGFDGRTLGECGEEENGIQYAEISLSQIRDFR 267 Query: 447 ENLPLETQGRGDLYRLI 397 +N Q + L++L+ Sbjct: 268 QN----AQSQNHLFKLL 280
>AMIE_BRAJA (Q89VS2) Aliphatic amidase (EC 3.5.1.4) (Acylamide amidohydrolase)| Length = 346 Score = 31.2 bits (69), Expect = 2.6 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 1/77 (1%) Frame = -3 Query: 624 NQLFVATCSPARDPNSQSDFVAWGHSSLIGPFGEVLAAAGHEDATV-IGEIDLSLIQAVR 448 N ++VA + A S F GHS++IG G L G ED + ++ LI+ R Sbjct: 211 NNVYVAVANAAGFDGVYSYF---GHSAIIGFDGRTLGECGEEDYGIQYAQLSKHLIRDAR 267 Query: 447 ENLPLETQGRGDLYRLI 397 N Q + LY+L+ Sbjct: 268 RN----GQSQNHLYKLV 280
>Y480_MYCTU (Q11146) Hypothetical UPF0012 protein Rv0480c/MT0498 (EC 3.5.-.-)| Length = 340 Score = 30.0 bits (66), Expect = 5.9 Identities = 12/39 (30%), Positives = 23/39 (58%) Frame = -3 Query: 555 GHSSLIGPFGEVLAAAGHEDATVIGEIDLSLIQAVRENL 439 G S + P GEV+ +AG + ++ +ID+ + A R+ + Sbjct: 283 GGSLVASPLGEVVVSAGTQPQLLVADIDVDNVAAARDRI 321
>TSP4_HUMAN (P35443) Thrombospondin-4 precursor| Length = 961 Score = 30.0 bits (66), Expect = 5.9 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = +3 Query: 261 CMPLHNCANPELSS*TVNPSCDQHRTGPI 347 C NC NPEL+ +VN C + R G + Sbjct: 418 CKAERNCRNPELNPCSVNAQCIEERQGDV 446
>YPQQ_PSEFL (P55176) Hypothetical UPF0012 protein in pqqF 5'region (EC 3.5.-.-)| (ORF2) Length = 285 Score = 30.0 bits (66), Expect = 5.9 Identities = 17/50 (34%), Positives = 26/50 (52%) Frame = -3 Query: 555 GHSSLIGPFGEVLAAAGHEDATVIGEIDLSLIQAVRENLPLETQGRGDLY 406 G SS+ P G +A AG ++A +IG +D L+ R + R +LY Sbjct: 230 GQSSIAAPDGSRIALAGLDEALIIGTLDRQLMGESRALNRYLSDRRPELY 279
>AMIE_RHOER (Q01360) Aliphatic amidase (EC 3.5.1.4) (Acylamide amidohydrolase)| (Wide spectrum amidase) Length = 345 Score = 29.6 bits (65), Expect = 7.7 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%) Frame = -3 Query: 624 NQLFVATCSPARDPNSQSDFVAWGHSSLIGPFGEVLAAAGHEDATV-IGEIDLSLIQAVR 448 N +VA + A S F GHS++IG G L G E+ + ++ +S I+ R Sbjct: 211 NNCYVAVANAAGFDGVYSYF---GHSAIIGFDGRTLGETGEEEYGIQYAQLSVSAIRDAR 267 Query: 447 ENLPLETQGRGDLYRLI 397 EN Q + +++L+ Sbjct: 268 EN----DQSQNHIFKLL 280 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 98,694,771 Number of Sequences: 219361 Number of extensions: 2188751 Number of successful extensions: 5367 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 5186 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5363 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5824436538 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
