ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61a21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_476343.1| Oryza sativa (japonica cultivar-group), mRNA 92 2e-15
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
3dbj|AP005869.3| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
4dbj|AK066298.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 2e-15
5gb|AC145383.3| Oryza sativa chromosome 3 BAC OSJNBa0038E17 genom... 66 1e-07
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 66 1e-07
7emb|AL713930.5|CNS07YP7 Oryza sativa chromosome 3, . BAC OSJNBa0... 66 1e-07
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 66 1e-07
9dbj|AK067118.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
10dbj|AK062005.1| Oryza sativa (japonica cultivar-group) cDNA clon... 66 1e-07
11dbj|AB022783.1| Oryza sativa mRNA for amino acid permease, compl... 66 1e-07
12gb|AC011485.6| Homo sapiens chromosome 19 clone CTB-164O19, comp... 50 0.008
13gb|AF254822.1|AF254822 Homo sapiens SMARCA4 isoform (SMARCA4) ge... 50 0.008
14gb|AC124451.4| Mus musculus BAC clone RP24-218I3 from chromosome... 44 0.50
15gb|AC019330.3| Homo sapiens BAC clone RP11-81N16 from 2, complet... 44 0.50
16gb|AC150860.4| Bos taurus BAC CH240-424I20 (Children's Hospital... 42 2.0
17gb|AC093100.2| Drosophila melanogaster clone BACR05J04, complete... 42 2.0
18emb|BX572093.1| Prochlorococcus marinus MED4 complete genome; se... 42 2.0
19gb|AC067751.7| Homo sapiens chromosome 10 clone RP11-357K14, com... 42 2.0
20gb|AC182464.2| Pan troglodytes BAC clone CH251-539C18 from chrom... 42 2.0
21gb|AC092619.3| Homo sapiens BAC clone RP11-225M4 from 2, complet... 42 2.0
22emb|AJ400719.1|CAR400719 Caprine arthritis-encephalitis virus pr... 42 2.0
23gb|AE001439.1| Helicobacter pylori J99, complete genome 42 2.0
24gb|AE003613.4| Drosophila melanogaster chromosome 2L, section 22... 42 2.0
25emb|BX294103.11| Zebrafish DNA sequence from clone CH211-257A8 i... 42 2.0
26gb|AC005285.1|AC005285 Drosophila melanogaster DNA sequence (P1s... 42 2.0
27emb|AL732538.6| Mouse DNA sequence from clone RP23-242O9 on chro... 42 2.0
28gb|U63085.1| Enterobacteria phage N15 primase (repA) gene, compl... 40 7.7
29gb|AC114572.13| Mus musculus chromosome 14, clone RP23-143M7, co... 40 7.7
30gb|U62586.1|OCU62586 Oryctolagus cuniculus Ig heavy chain DQ52 a... 40 7.7
31gb|AY386695.1| Oryctolagus cuniculus clone 219D23, complete sequ... 40 7.7
32gb|AC122471.4| Mus musculus BAC clone RP24-322M5 from chromosome... 40 7.7
33gb|AC003078.1| Homo sapiens BAC clone GS1-117O10 from 7, complet... 40 7.7
34gb|AC142298.1| Pan troglodytes BAC clone RP43-99N14 from 7, comp... 40 7.7
35gb|AC145450.4| Mus musculus strain C57BL/6J clone rp23-430i3, co... 40 7.7
36emb|AL354695.12| Human DNA sequence from clone RP11-265G8 on chr... 40 7.7
37emb|AL135842.15| Human DNA sequence from clone RP1-91G5 on chrom... 40 7.7
38emb|AL121758.24|HSDJ850E9 Human DNA sequence from clone RP5-850E... 40 7.7
39ref|XM_779313.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 7.7
40gb|AC116025.21| Homo sapiens chromosome 17, clone CTD-2529O21, c... 40 7.7
41emb|BX511171.13| Zebrafish DNA sequence from clone DKEY-264K15 i... 40 7.7
42gb|AC016924.19| Homo sapiens 3 BAC RP11-205A6 (Roswell Park Canc... 40 7.7
43dbj|AB198012.1| Asphondylia gennadii mitochondrial gene for 12S ... 40 7.7
44gb|DQ391279.1| Cloning vector pJAZZ-KA, complete sequence 40 7.7
45gb|AC155313.2| Mus musculus BAC clone RP23-349D10 from chromosom... 40 7.7
46dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
47gb|AC109825.4| Homo sapiens BAC clone RP11-745M4 from 2, complet... 40 7.7
48gb|AC096967.18| Homo sapiens 3 BAC RP11-200A1 (Roswell Park Canc... 40 7.7
49gb|AC100791.15| Homo sapiens chromosome 17, clone RP11-353N14, c... 40 7.7
50gb|AC012352.7| Homo sapiens BAC clone RP11-12M21 from 2, complet... 40 7.7
51emb|BX510317.5| Zebrafish DNA sequence from clone CH211-229G14 i... 40 7.7
52gb|AY847751.1| Bombina maxima clone BM2S-1 antimicrobial peptide... 40 7.7
53gb|AY847749.1| Bombina maxima clone BM1S-1 antimicrobial peptide... 40 7.7
54emb|BX649425.3| Zebrafish DNA sequence from clone CH211-239E6 in... 40 7.7
55gb|AY108640.1| Zea mays PCO121284 mRNA sequence 40 7.7
56emb|AL442007.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 40 7.7
57dbj|AP003031.3| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 7.7
58emb|AL606692.3|OSJN00105 Oryza sativa genomic DNA, chromosome 4,... 40 7.7
59gb|AF064539.1|AF064539 Bacteriophage N15, complete genome 40 7.7
60emb|CT010520.15| Mouse DNA sequence from clone RP23-349A19 on ch... 40 7.7
61gb|AC123059.3| Mus musculus BAC clone RP23-188K16 from 15, compl... 40 7.7
62gb|AC154758.2| Mus musculus BAC clone RP24-406J8 from chromosome... 40 7.7
63emb|AL732309.9| Mouse DNA sequence from clone RP23-132N23 on chr... 40 7.7
64emb|AL844854.6| Mouse DNA sequence from clone RP23-368I1 on chro... 40 7.7 
>ref|XM_476343.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1591

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 97/114 (85%)
 Strand = Plus / Minus

                                                                        
Query: 453  tcacatatcagcaaataagtggtaagtactggaatcaagcatgataagcctgagcgcagc 512
            ||||| ||||||||| || |||||||| |||||||| | |||||| ||||||||||||||
Sbjct: 1379 tcacagatcagcaaacaaatggtaagtcctggaatcgaccatgattagcctgagcgcagc 1320

                                                                  
Query: 513  gactgcggccgtgaccgacaacaagctgaacccaacaacattcagccagtgcca 566
             ||||| || | ||  ||||| |||||||| ||| ||||||| |||||||||||
Sbjct: 1319 aactgcagctgcgatggacaataagctgaagccagcaacattgagccagtgcca 1266
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
             complete sequence
          Length = 29644043

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 97/114 (85%)
 Strand = Plus / Plus

                                                                         
Query: 453   tcacatatcagcaaataagtggtaagtactggaatcaagcatgataagcctgagcgcagc 512
             ||||| ||||||||| || |||||||| |||||||| | |||||| ||||||||||||||
Sbjct: 47999 tcacagatcagcaaacaaatggtaagtcctggaatcgaccatgattagcctgagcgcagc 48058

                                                                   
Query: 513   gactgcggccgtgaccgacaacaagctgaacccaacaacattcagccagtgcca 566
              ||||| || | ||  ||||| |||||||| ||| ||||||| |||||||||||
Sbjct: 48059 aactgcagctgcgatggacaataagctgaagccagcaacattgagccagtgcca 48112
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>dbj|AP005869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:B1026C12
          Length = 170240

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 97/114 (85%)
 Strand = Plus / Plus

                                                                         
Query: 453   tcacatatcagcaaataagtggtaagtactggaatcaagcatgataagcctgagcgcagc 512
             ||||| ||||||||| || |||||||| |||||||| | |||||| ||||||||||||||
Sbjct: 47298 tcacagatcagcaaacaaatggtaagtcctggaatcgaccatgattagcctgagcgcagc 47357

                                                                   
Query: 513   gactgcggccgtgaccgacaacaagctgaacccaacaacattcagccagtgcca 566
              ||||| || | ||  ||||| |||||||| ||| ||||||| |||||||||||
Sbjct: 47358 aactgcagctgcgatggacaataagctgaagccagcaacattgagccagtgcca 47411
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>dbj|AK066298.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013062C01, full
            insert sequence
          Length = 1591

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 97/114 (85%)
 Strand = Plus / Minus

                                                                        
Query: 453  tcacatatcagcaaataagtggtaagtactggaatcaagcatgataagcctgagcgcagc 512
            ||||| ||||||||| || |||||||| |||||||| | |||||| ||||||||||||||
Sbjct: 1379 tcacagatcagcaaacaaatggtaagtcctggaatcgaccatgattagcctgagcgcagc 1320

                                                                  
Query: 513  gactgcggccgtgaccgacaacaagctgaacccaacaacattcagccagtgcca 566
             ||||| || | ||  ||||| |||||||| ||| ||||||| |||||||||||
Sbjct: 1319 aactgcagctgcgatggacaataagctgaagccagcaacattgagccagtgcca 1266
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>gb|AC145383.3| Oryza sativa chromosome 3 BAC OSJNBa0038E17 genomic sequence, complete
              sequence
          Length = 141691

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 96/117 (82%)
 Strand = Plus / Plus

                                                                          
Query: 450    gcctcacatatcagcaaataagtggtaagtactggaatcaagcatgataagcctgagcgc 509
              |||||||||||||||||| || ||||| |||||| | || | | |||| ||||| | |||
Sbjct: 114098 gcctcacatatcagcaaacaaatggtatgtactgtagtcgaccgtgattagcctcaccgc 114157

                                                                       
Query: 510    agcgactgcggccgtgaccgacaacaagctgaacccaacaacattcagccagtgcca 566
              ||| || || || | ||| |||||  ||||||| |||||||| ||||||||||||||
Sbjct: 114158 agcaaccgcagctgcgacggacaagcagctgaagccaacaacgttcagccagtgcca 114214
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 96/117 (82%)
 Strand = Plus / Plus

                                                                            
Query: 450      gcctcacatatcagcaaataagtggtaagtactggaatcaagcatgataagcctgagcgc 509
                |||||||||||||||||| || ||||| |||||| | || | | |||| ||||| | |||
Sbjct: 24738551 gcctcacatatcagcaaacaaatggtatgtactgtagtcgaccgtgattagcctcaccgc 24738610

                                                                         
Query: 510      agcgactgcggccgtgaccgacaacaagctgaacccaacaacattcagccagtgcca 566
                ||| || || || | ||| |||||  ||||||| |||||||| ||||||||||||||
Sbjct: 24738611 agcaaccgcagctgcgacggacaagcagctgaagccaacaacgttcagccagtgcca 24738667
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>emb|AL713930.5|CNS07YP7 Oryza sativa chromosome 3, . BAC OSJNBa0007L18 of library OSJNBa from
             chromosome 3 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 183327

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 96/117 (82%)
 Strand = Plus / Plus

                                                                         
Query: 450   gcctcacatatcagcaaataagtggtaagtactggaatcaagcatgataagcctgagcgc 509
             |||||||||||||||||| || ||||| |||||| | || | | |||| ||||| | |||
Sbjct: 34070 gcctcacatatcagcaaacaaatggtatgtactgtagtcgaccgtgattagcctcaccgc 34129

                                                                      
Query: 510   agcgactgcggccgtgaccgacaacaagctgaacccaacaacattcagccagtgcca 566
             ||| || || || | ||| |||||  ||||||| |||||||| ||||||||||||||
Sbjct: 34130 agcaaccgcagctgcgacggacaagcagctgaagccaacaacgttcagccagtgcca 34186
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 96/117 (82%)
 Strand = Plus / Plus

                                                                            
Query: 450      gcctcacatatcagcaaataagtggtaagtactggaatcaagcatgataagcctgagcgc 509
                |||||||||||||||||| || ||||| |||||| | || | | |||| ||||| | |||
Sbjct: 24655381 gcctcacatatcagcaaacaaatggtatgtactgtagtcgaccgtgattagcctcaccgc 24655440

                                                                         
Query: 510      agcgactgcggccgtgaccgacaacaagctgaacccaacaacattcagccagtgcca 566
                ||| || || || | ||| |||||  ||||||| |||||||| ||||||||||||||
Sbjct: 24655441 agcaaccgcagctgcgacggacaagcagctgaagccaacaacgttcagccagtgcca 24655497
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>dbj|AK067118.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013096E03, full
            insert sequence
          Length = 2278

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 96/117 (82%)
 Strand = Plus / Minus

                                                                        
Query: 450  gcctcacatatcagcaaataagtggtaagtactggaatcaagcatgataagcctgagcgc 509
            |||||||||||||||||| || ||||| |||||| | || | | |||| ||||| | |||
Sbjct: 1989 gcctcacatatcagcaaacaaatggtatgtactgtagtcgaccgtgattagcctcaccgc 1930

                                                                     
Query: 510  agcgactgcggccgtgaccgacaacaagctgaacccaacaacattcagccagtgcca 566
            ||| || || || | ||| |||||  ||||||| |||||||| ||||||||||||||
Sbjct: 1929 agcaaccgcagctgcgacggacaagcagctgaagccaacaacgttcagccagtgcca 1873
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>dbj|AK062005.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-D10, full
            insert sequence
          Length = 1690

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 96/117 (82%)
 Strand = Plus / Minus

                                                                        
Query: 450  gcctcacatatcagcaaataagtggtaagtactggaatcaagcatgataagcctgagcgc 509
            |||||||||||||||||| || ||||| |||||| | || | | |||| ||||| | |||
Sbjct: 1418 gcctcacatatcagcaaacaaatggtatgtactgtagtcgaccgtgattagcctcaccgc 1359

                                                                     
Query: 510  agcgactgcggccgtgaccgacaacaagctgaacccaacaacattcagccagtgcca 566
            ||| || || || | ||| |||||  ||||||| |||||||| ||||||||||||||
Sbjct: 1358 agcaaccgcagctgcgacggacaagcagctgaagccaacaacgttcagccagtgcca 1302
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>dbj|AB022783.1| Oryza sativa mRNA for amino acid permease, complete cds
          Length = 1863

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 96/117 (82%)
 Strand = Plus / Minus

                                                                        
Query: 450  gcctcacatatcagcaaataagtggtaagtactggaatcaagcatgataagcctgagcgc 509
            |||||||||||||||||| || ||||| |||||| | || | | |||| ||||| | |||
Sbjct: 1568 gcctcacatatcagcaaacaaatggtatgtactgtagtcgaccgtgattagcctcaccgc 1509

                                                                     
Query: 510  agcgactgcggccgtgaccgacaacaagctgaacccaacaacattcagccagtgcca 566
            ||| || || || | ||| |||||  ||||||| |||||||| ||||||||||||||
Sbjct: 1508 agcaaccgcagctgcgacggacaagcagctgaagccaacaacgttcagccagtgcca 1452
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>gb|AC011485.6| Homo sapiens chromosome 19 clone CTB-164O19, complete sequence
          Length = 128618

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                       
Query: 126    tctgacccccacacacacccagccc 150
              |||||||||||||||||||||||||
Sbjct: 125091 tctgacccccacacacacccagccc 125115
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>gb|AF254822.1|AF254822 Homo sapiens SMARCA4 isoform (SMARCA4) gene, complete cds,
             alternatively spliced
          Length = 102910

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 126   tctgacccccacacacacccagccc 150
             |||||||||||||||||||||||||
Sbjct: 94687 tctgacccccacacacacccagccc 94663
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>gb|AC124451.4| Mus musculus BAC clone RP24-218I3 from chromosome 9, complete sequence
          Length = 168315

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 5     ttaaatattttaataagtaata 26
             ||||||||||||||||||||||
Sbjct: 52077 ttaaatattttaataagtaata 52098
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>gb|AC019330.3| Homo sapiens BAC clone RP11-81N16 from 2, complete sequence
          Length = 167777

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 7     aaatattttaataagtaatata 28
             ||||||||||||||||||||||
Sbjct: 38390 aaatattttaataagtaatata 38411
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>gb|AC150860.4| Bos taurus  BAC CH240-424I20 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 165874

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 132   ccccacacacacccagccccaaggc 156
             |||||||||||||| ||||||||||
Sbjct: 56849 ccccacacacaccccgccccaaggc 56825
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>gb|AC093100.2| Drosophila melanogaster clone BACR05J04, complete sequence
          Length = 214621

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 6     taaatattttaataagtaata 26
             |||||||||||||||||||||
Sbjct: 89859 taaatattttaataagtaata 89839
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>emb|BX572093.1| Prochlorococcus marinus MED4 complete genome; segment 4/5
          Length = 348986

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 5      ttaaatattttaataagtaat 25
              |||||||||||||||||||||
Sbjct: 178305 ttaaatattttaataagtaat 178325
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>gb|AC067751.7| Homo sapiens chromosome 10 clone RP11-357K14, complete sequence
          Length = 180882

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 286   acaaatagtagatatttcagacttt 310
             |||||||||||||||||||| ||||
Sbjct: 74130 acaaatagtagatatttcaggcttt 74154
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>gb|AC182464.2| Pan troglodytes BAC clone CH251-539C18 from chromosome 20, complete
              sequence
          Length = 162793

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 64     aactttgaaaagaaaaccagagctt 88
              ||||||| |||||||||||||||||
Sbjct: 149825 aactttgtaaagaaaaccagagctt 149849
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>gb|AC092619.3| Homo sapiens BAC clone RP11-225M4 from 2, complete sequence
          Length = 163475

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 132   ccccacacacacccagcccca 152
             |||||||||||||||||||||
Sbjct: 57568 ccccacacacacccagcccca 57548
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>emb|AJ400719.1|CAR400719 Caprine arthritis-encephalitis virus proviral partial env gene for
           surface glycoprotein, strain 021
          Length = 1902

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 294 tagatatttcagactttcagg 314
           |||||||||||||||||||||
Sbjct: 918 tagatatttcagactttcagg 898
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>gb|AE001439.1| Helicobacter pylori J99, complete genome
          Length = 1643831

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 10     tattttaataagtaatataaa 30
              |||||||||||||||||||||
Sbjct: 443765 tattttaataagtaatataaa 443785
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>gb|AE003613.4| Drosophila melanogaster chromosome 2L, section 22 of 83 of the complete
              sequence
          Length = 280095

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 6      taaatattttaataagtaata 26
              |||||||||||||||||||||
Sbjct: 178013 taaatattttaataagtaata 178033
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>emb|BX294103.11| Zebrafish DNA sequence from clone CH211-257A8 in linkage group 9,
              complete sequence
          Length = 193969

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 129    gacccccacacacacccagcc 149
              |||||||||||||||||||||
Sbjct: 154217 gacccccacacacacccagcc 154237
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>gb|AC005285.1|AC005285 Drosophila melanogaster DNA sequence (P1s DS00121 (D128), DS05470 (D270),
              and DS00108 (D120)), complete sequence
          Length = 209071

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 6      taaatattttaataagtaata 26
              |||||||||||||||||||||
Sbjct: 191367 taaatattttaataagtaata 191387
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>emb|AL732538.6| Mouse DNA sequence from clone RP23-242O9 on chromosome 4, complete
             sequence
          Length = 172802

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 409   catactataatatatgaaaat 429
             |||||||||||||||||||||
Sbjct: 41290 catactataatatatgaaaat 41310
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>gb|U63085.1| Enterobacteria phage N15 primase (repA) gene, complete cds
          Length = 5353

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 206  gccttttccttcagctgagg 225
            ||||||||||||||||||||
Sbjct: 4115 gccttttccttcagctgagg 4134
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>gb|AC114572.13| Mus musculus chromosome 14, clone RP23-143M7, complete sequence
          Length = 188776

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 7     aaatattttaataagtaatataaa 30
             |||||||||||||||||| |||||
Sbjct: 16403 aaatattttaataagtaaaataaa 16380
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>gb|U62586.1|OCU62586 Oryctolagus cuniculus Ig heavy chain DQ52 and JH1-6 genes, F-I
           haplotype
          Length = 2897

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 133 cccacacacacccagcccca 152
           ||||||||||||||||||||
Sbjct: 5   cccacacacacccagcccca 24
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>gb|AY386695.1| Oryctolagus cuniculus clone 219D23, complete sequence
          Length = 137302

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 133   cccacacacacccagcccca 152
             ||||||||||||||||||||
Sbjct: 96975 cccacacacacccagcccca 96994
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>gb|AC122471.4| Mus musculus BAC clone RP24-322M5 from chromosome 2, complete sequence
          Length = 206592

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 131   cccccacacacacccagccccaag 154
             |||||||||||||||| |||||||
Sbjct: 38939 cccccacacacacccacccccaag 38962
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>gb|AC003078.1| Homo sapiens BAC clone GS1-117O10 from 7, complete sequence
          Length = 182433

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 61     tataactttgaaaagaaaaccaga 84
              |||||||| |||||||||||||||
Sbjct: 133416 tataacttggaaaagaaaaccaga 133393
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>gb|AC142298.1| Pan troglodytes BAC clone RP43-99N14 from 7, complete sequence
          Length = 162900

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 61     tataactttgaaaagaaaaccaga 84
              |||||||| |||||||||||||||
Sbjct: 118558 tataacttggaaaagaaaaccaga 118535
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>gb|AC145450.4| Mus musculus strain C57BL/6J clone rp23-430i3, complete sequence
          Length = 208207

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 131    cccccacacacacccagccccaag 154
              |||||||||||||||| |||||||
Sbjct: 185507 cccccacacacacccacccccaag 185484
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>emb|AL354695.12| Human DNA sequence from clone RP11-265G8 on chromosome 10 Contains a
             high-mobility group nucleosome binding domain 1 (HMGN1)
             pseudogene, a pseudogene similar to part of ATPase, Ca++
             transporting cardiac muscle slow twitch 2 (ATP2A2) and the
             gene for a novel protein, complete sequence
          Length = 125859

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 7     aaatattttaataagtaatataaa 30
             |||||||||| |||||||||||||
Sbjct: 88915 aaatattttagtaagtaatataaa 88892
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>emb|AL135842.15| Human DNA sequence from clone RP1-91G5 on chromosome 1q21.1-21.3
             Contains the 3' end of a novel gene, a novel gene, a high
             mobility group nucleosomal binding domain 3 (HMGN3)
             pseudogene, the C1orf10 gene for chromosome 1 open reading
             frame 10, the SPRL5A for small proline rich-like
             (epidermal differentiation complex) 5A and the NICE-1 gene
             for NICE-1 protein, complete sequence
          Length = 188285

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 135   cacacacacccagccccaaggctc 158
             ||||||||| ||||||||||||||
Sbjct: 35163 cacacacactcagccccaaggctc 35186
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>emb|AL121758.24|HSDJ850E9 Human DNA sequence from clone RP5-850E9 on chromosome 20 Contains part
             of the gene for a novel C2H2 type zinc finger protein
             similar to Drosophila Scratch (Scrt), Slug and Xenopus
             Snail, the C20orf139 gene for a novel protein similar to
             Drosophila CG6762 and five CpG islands, complete sequence
          Length = 114791

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 135   cacacacacccagccccaag 154
             ||||||||||||||||||||
Sbjct: 95259 cacacacacccagccccaag 95240
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>ref|XM_779313.1| PREDICTED: Strongylocentrotus purpuratus similar to secreted
           nidogen domain protein (LOC579184), partial mRNA
          Length = 874

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 21  gtaatataaagcgtctttcttgaa 44
           |||||||||||||||||| |||||
Sbjct: 327 gtaatataaagcgtctttgttgaa 304
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>gb|AC116025.21| Homo sapiens chromosome 17, clone CTD-2529O21, complete sequence
          Length = 209109

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 534    caagctgaacccaacaacat 553
              ||||||||||||||||||||
Sbjct: 104740 caagctgaacccaacaacat 104759
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>emb|BX511171.13| Zebrafish DNA sequence from clone DKEY-264K15 in linkage group 4
             Contains the ascl1a gene for achaete-scute complex-like 1a
             (Drosophila), the gene for a novel protein similar to
             vertebrate RecQ protein-like DNA helicase Q1-like (RECQL),
             the gene for a novel protein similar to tyrosine
             hydroxylase (th), the pah gene for phenylalanine
             hydroxylase, the 5' end of the gene for a novel protein
             similar to vertebrate uncharacterized hematopoietic
             stem/progenitor cells protein MDS028 (MDS028) and a CpG
             island, complete sequence
          Length = 166242

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 62    ataactttgaaaagaaaacc 81
             ||||||||||||||||||||
Sbjct: 80810 ataactttgaaaagaaaacc 80829
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>gb|AC016924.19| Homo sapiens 3 BAC RP11-205A6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 51001

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 67    tttgaaaagaaaaccagagc 86
             ||||||||||||||||||||
Sbjct: 10653 tttgaaaagaaaaccagagc 10634
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>dbj|AB198012.1| Asphondylia gennadii mitochondrial gene for 12S ribosomal RNA,
           partial sequence, isolate: Asp.gennadii262
          Length = 388

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 8   aatattttaataagtaatat 27
           ||||||||||||||||||||
Sbjct: 371 aatattttaataagtaatat 352
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>gb|DQ391279.1| Cloning vector pJAZZ-KA, complete sequence
          Length = 14600

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 206  gccttttccttcagctgagg 225
            ||||||||||||||||||||
Sbjct: 8030 gccttttccttcagctgagg 8049
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>gb|AC155313.2| Mus musculus BAC clone RP23-349D10 from chromosome 15, complete sequence
          Length = 213367

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 124    ggtctgacccccacacacacccag 147
              |||||||||||| |||||||||||
Sbjct: 125498 ggtctgacccccccacacacccag 125521
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 5        ttaaatattttaataagtaa 24
                ||||||||||||||||||||
Sbjct: 33181170 ttaaatattttaataagtaa 33181189
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>gb|AC109825.4| Homo sapiens BAC clone RP11-745M4 from 2, complete sequence
          Length = 199133

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 7      aaatattttaataagtaatataaa 30
              ||||| ||||||||||||||||||
Sbjct: 139545 aaataatttaataagtaatataaa 139568
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>gb|AC096967.18| Homo sapiens 3 BAC RP11-200A1 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 123251

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 135    cacacacacccagccccaag 154
              ||||||||||||||||||||
Sbjct: 116449 cacacacacccagccccaag 116430
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>gb|AC100791.15| Homo sapiens chromosome 17, clone RP11-353N14, complete sequence
          Length = 215313

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 534    caagctgaacccaacaacat 553
              ||||||||||||||||||||
Sbjct: 205042 caagctgaacccaacaacat 205061
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>gb|AC012352.7| Homo sapiens BAC clone RP11-12M21 from 2, complete sequence
          Length = 168142

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 287   caaatagtagatatttcagacttt 310
             ||||||||| ||||||||||||||
Sbjct: 16861 caaatagtaaatatttcagacttt 16884
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>emb|BX510317.5| Zebrafish DNA sequence from clone CH211-229G14 in linkage group 9,
             complete sequence
          Length = 159458

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 286   acaaatagtagatatttcag 305
             ||||||||||||||||||||
Sbjct: 20701 acaaatagtagatatttcag 20720
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>gb|AY847751.1| Bombina maxima clone BM2S-1 antimicrobial peptide precursor, gene,
            complete cds
          Length = 2368

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 63   taactttgaaaagaaaacca 82
            ||||||||||||||||||||
Sbjct: 1533 taactttgaaaagaaaacca 1552
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>gb|AY847749.1| Bombina maxima clone BM1S-1 antimicrobial peptide precursor, gene,
            complete cds
          Length = 2395

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 63   taactttgaaaagaaaacca 82
            ||||||||||||||||||||
Sbjct: 1556 taactttgaaaagaaaacca 1575
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>emb|BX649425.3| Zebrafish DNA sequence from clone CH211-239E6 in linkage group 4,
             complete sequence
          Length = 133503

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 1     atgcttaaatattttaataa 20
             ||||||||||||||||||||
Sbjct: 62156 atgcttaaatattttaataa 62175
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>gb|AY108640.1| Zea mays PCO121284 mRNA sequence
          Length = 1610

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 539  tgaacccaacaacattcagccagtgcca 566
            ||||||||| |||||| |||||||||||
Sbjct: 1377 tgaacccaagaacattgagccagtgcca 1350
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>emb|AL442007.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0212B02, complete
             sequence
          Length = 118971

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     ttaaatattttaataagtaa 24
             ||||||||||||||||||||
Sbjct: 71656 ttaaatattttaataagtaa 71675
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>dbj|AP003031.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-535A19, complete
             sequences
          Length = 95585

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 290   atagtagatatttcagactt 309
             ||||||||||||||||||||
Sbjct: 38934 atagtagatatttcagactt 38953
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>emb|AL606692.3|OSJN00105 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0059K02,
             complete sequence
          Length = 165745

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     ttaaatattttaataagtaa 24
             ||||||||||||||||||||
Sbjct: 63819 ttaaatattttaataagtaa 63838
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>gb|AF064539.1|AF064539 Bacteriophage N15, complete genome
          Length = 46375

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 206   gccttttccttcagctgagg 225
             ||||||||||||||||||||
Sbjct: 32832 gccttttccttcagctgagg 32851
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>emb|CT010520.15| Mouse DNA sequence from clone RP23-349A19 on chromosome 14, complete
             sequence
          Length = 175582

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 7     aaatattttaataagtaatataaa 30
             |||||||||||||||||| |||||
Sbjct: 69408 aaatattttaataagtaaaataaa 69385
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>gb|AC123059.3| Mus musculus BAC clone RP23-188K16 from 15, complete sequence
          Length = 188863

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 124  ggtctgacccccacacacacccag 147
            |||||||||||| |||||||||||
Sbjct: 2845 ggtctgacccccccacacacccag 2822
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>gb|AC154758.2| Mus musculus BAC clone RP24-406J8 from chromosome 17, complete sequence
          Length = 151012

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 65    actttgaaaagaaaaccaga 84
             ||||||||||||||||||||
Sbjct: 42700 actttgaaaagaaaaccaga 42719
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>emb|AL732309.9| Mouse DNA sequence from clone RP23-132N23 on chromosome 2, complete
              sequence
          Length = 221859

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 131    cccccacacacacccagccccaag 154
              |||||||||||||||| |||||||
Sbjct: 121418 cccccacacacacccacccccaag 121395
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>emb|AL844854.6| Mouse DNA sequence from clone RP23-368I1 on chromosome 2, complete
             sequence
          Length = 185135

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 131   cccccacacacacccagccc 150
             ||||||||||||||||||||
Sbjct: 67627 cccccacacacacccagccc 67608


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,552,510
Number of Sequences: 3902068
Number of extensions: 5552510
Number of successful extensions: 125933
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 125625
Number of HSP's gapped (non-prelim): 301
length of query: 570
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 547
effective length of database: 17,143,297,704
effective search space: 9377383844088
effective search space used: 9377383844088
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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