ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61a14
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_184393.2| Oryza sativa (japonica cultivar-group), mRNA 283 3e-73
2dbj|AK099949.1| Oryza sativa (japonica cultivar-group) cDNA clon... 283 3e-73
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 98 4e-17
4dbj|AP003045.2| Oryza sativa (japonica cultivar-group) genomic D... 98 4e-17
5dbj|AP002522.1| Oryza sativa (japonica cultivar-group) genomic D... 98 4e-17
6gb|AC135794.3| Oryza sativa (japonica cultivar-group) chromosome... 44 0.55
7gb|CP000136.1| Rhizobium etli CFN 42 plasmid p42c, complete sequ... 44 0.55
8dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.55
9dbj|AK071972.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.55
10gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.55
11gb|AC116671.14| Mus musculus chromosome 3, clone RP23-111L16, co... 40 8.6
12gb|DP000016.1| Pan troglodytes target 1 genomic scaffold 40 8.6
13gb|AC166331.5| Mus musculus chromosome 3, clone RP23-277D9, comp... 40 8.6
14gb|AC145405.3| Gorilla gorilla gorilla clone CH255-421A19, compl... 40 8.6
15gb|AC139060.5| Mus musculus chromosome 16, clone RP23-58G17, com... 40 8.6
16gb|AC087730.2| Pan troglodytes clone RP43-89H17, complete sequence 40 8.6
17gb|BT012755.1| Lycopersicon esculentum clone 113699R, mRNA sequence 40 8.6
18gb|AC087555.3| Papio anubis clone RP41-63I4, complete sequence 40 8.6
19gb|AF287957.6| Homo sapiens chromosome 8 clone CTD-2541M15 map p... 40 8.6
20gb|AF530594.1| Petunia integrifolia subsp. inflata putative nitr... 40 8.6
21gb|AC002465.1| Homo sapiens BAC clone CTA-343P13 from 7, complet... 40 8.6
22gb|AC102689.10| Mus musculus chromosome 12, clone RP24-142L2, co... 40 8.6
23ref|XM_949206.1| Theileria annulata strain Ankara hypothetical p... 40 8.6
24gb|AC165343.3| Mus musculus BAC clone RP23-476C24 from chromosom... 40 8.6
25gb|AC136507.19| Medicago truncatula clone mth2-24o19, complete s... 40 8.6
26gb|AC146941.8| Medicago truncatula clone mth2-133o10, complete s... 40 8.6
27gb|AY929909.1| Vannella sp. strain 4362V/II 18S small subunit ri... 40 8.6
28gb|AC110377.5| Mus musculus BAC clone RP23-460A13 from chromosom... 40 8.6
29gb|DP000005.1| Macaca mulatta target 1 genomic scaffold 40 8.6
30gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 40 8.6
31gb|DP000025.1| Gorilla gorilla gorilla target 1 genomic scaffold 40 8.6
32gb|AC087858.2| Homo sapiens chromosome 3 clone RP11-207E20 map 3... 40 8.6
33gb|AC122151.4| Macaca mulatta clone CH250-492A14, complete sequence 40 8.6
34gb|AF245226.1|AF245226 Homo sapiens chromosome 21 map 21q21 clon... 40 8.6
35dbj|BS000047.1| Pan troglodytes chromosome 22 clone:PTB-109H19, ... 40 8.6
36ref|NM_210700.1| Eremothecium gossypii AFL204Cp (AFL204C), mRNA 40 8.6
37gb|AY103888.1| Zea mays PCO108132 mRNA sequence 40 8.6
38dbj|AP001674.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 8.6
39emb|AL157359.1|HSP19646 Homo sapiens chromosome 21 sequence from... 40 8.6
40gb|AC122443.4| Mus musculus BAC clone RP24-231K2 from 17, comple... 40 8.6
41emb|AL049753.1|HS3D19 Homo sapiens chromosome 21 Cosmid LLNCO21D... 40 8.6
42emb|AL928797.6| Mouse DNA sequence from clone RP23-178B19 on chr... 40 8.6 
>ref|NM_184393.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1429

 Score =  283 bits (143), Expect = 3e-73
 Identities = 318/375 (84%), Gaps = 1/375 (0%)
 Strand = Plus / Minus

                                                                        
Query: 256  ttgcagtctgcaaagtatttgcctgtcacccccttcagctgagggttgagcccgacgtaa 315
            |||||||| ||||||||||  || ||||| ||||| ||||||||||| || || || || 
Sbjct: 1105 ttgcagtcagcaaagtattgtccggtcactcccttgagctgagggttcagtcctacatag 1046

                                                                        
Query: 316  caagtagtggctgctccctggggtacattcttccagaacacgtaagtgacgacttgaatt 375
            ||||| || |||||||||||||||||  ||||||| || | ||| ||| | | |||||  
Sbjct: 1045 caagtggtagctgctccctggggtacgctcttccacaagatgtaggtggcaaattgaagc 986

                                                                        
Query: 376  accttcatgagagcaaaggaatgcctcatcaaattggtcatgatcaatccaggatgaacg 435
            ||| |||| ||   |||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct: 985  accctcataaggaaaaaggagtgcctcatcaaattggtcatgatcaatccaggatgaaca 926

                                                                        
Query: 436  caattaactgtgatgttagctccttcctccttgagccgcctagagagctcttttgcgtgc 495
            || ||||  |||||||| |||||||| ||||| ||||| |||||||||||||| ||||| 
Sbjct: 925  cagttaatagtgatgttcgctccttcttccttcagccgtctagagagctctttcgcgtga 866

                                                                        
Query: 496  agtatgtttgcaagcttagattgtccataggccattttatcattgtatgttttcttgtca 555
            ||||||||||| ||||||||||||||||| ||||| || |||| |||||||||||  || 
Sbjct: 865  agtatgtttgccagcttagattgtccataagccatcttgtcatcgtatgttttctcatcg 806

                                                                        
Query: 556  ttgagctgatcaaactgaatcccctttggatatgtatgggaggtgggcaactgatgacaa 615
            ||||| | |||||||| ||| ||||| |||||||||| ||||||| ||||| ||||||||
Sbjct: 805  ttgagtttatcaaactcaattcccttcggatatgtat-ggaggtgagcaaccgatgacaa 747

                           
Query: 616  gttcacaatgcgacc 630
            ||||||||| |||||
Sbjct: 746  gttcacaatacgacc 732



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 190  tcgctgaattcccagagctgcttcgcca 217
            ||||||||||||||||| ||||||||||
Sbjct: 1171 tcgctgaattcccagagttgcttcgcca 1144
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>dbj|AK099949.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123E12, full
            insert sequence
          Length = 1431

 Score =  283 bits (143), Expect = 3e-73
 Identities = 318/375 (84%), Gaps = 1/375 (0%)
 Strand = Plus / Minus

                                                                        
Query: 256  ttgcagtctgcaaagtatttgcctgtcacccccttcagctgagggttgagcccgacgtaa 315
            |||||||| ||||||||||  || ||||| ||||| ||||||||||| || || || || 
Sbjct: 1107 ttgcagtcagcaaagtattgtccggtcactcccttgagctgagggttcagtcctacatag 1048

                                                                        
Query: 316  caagtagtggctgctccctggggtacattcttccagaacacgtaagtgacgacttgaatt 375
            ||||| || |||||||||||||||||  ||||||| || | ||| ||| | | |||||  
Sbjct: 1047 caagtggtagctgctccctggggtacgctcttccacaagatgtaggtggcaaattgaagc 988

                                                                        
Query: 376  accttcatgagagcaaaggaatgcctcatcaaattggtcatgatcaatccaggatgaacg 435
            ||| |||| ||   |||||| |||||||||||||||||||||||||||||||||||||| 
Sbjct: 987  accctcataaggaaaaaggagtgcctcatcaaattggtcatgatcaatccaggatgaaca 928

                                                                        
Query: 436  caattaactgtgatgttagctccttcctccttgagccgcctagagagctcttttgcgtgc 495
            || ||||  |||||||| |||||||| ||||| ||||| |||||||||||||| ||||| 
Sbjct: 927  cagttaatagtgatgttcgctccttcttccttcagccgtctagagagctctttcgcgtga 868

                                                                        
Query: 496  agtatgtttgcaagcttagattgtccataggccattttatcattgtatgttttcttgtca 555
            ||||||||||| ||||||||||||||||| ||||| || |||| |||||||||||  || 
Sbjct: 867  agtatgtttgccagcttagattgtccataagccatcttgtcatcgtatgttttctcatcg 808

                                                                        
Query: 556  ttgagctgatcaaactgaatcccctttggatatgtatgggaggtgggcaactgatgacaa 615
            ||||| | |||||||| ||| ||||| |||||||||| ||||||| ||||| ||||||||
Sbjct: 807  ttgagtttatcaaactcaattcccttcggatatgtat-ggaggtgagcaaccgatgacaa 749

                           
Query: 616  gttcacaatgcgacc 630
            ||||||||| |||||
Sbjct: 748  gttcacaatacgacc 734



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 190  tcgctgaattcccagagctgcttcgcca 217
            ||||||||||||||||| ||||||||||
Sbjct: 1173 tcgctgaattcccagagttgcttcgcca 1146
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 70/77 (90%)
 Strand = Plus / Minus

                                                                           
Query: 390     aaaggaatgcctcatcaaattggtcatgatcaatccaggatgaacgcaattaactgtgat 449
               |||||| |||||||||||||||||||||||||||||||||||||| || ||||  |||||
Sbjct: 2801974 aaaggagtgcctcatcaaattggtcatgatcaatccaggatgaacacagttaatagtgat 2801915

                                
Query: 450     gttagctccttcctcct 466
               ||| |||||||| ||||
Sbjct: 2801914 gttcgctccttcttcct 2801898



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 71/80 (88%)
 Strand = Plus / Minus

                                                                           
Query: 464     ccttgagccgcctagagagctcttttgcgtgcagtatgtttgcaagcttagattgtccat 523
               |||| ||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct: 2801734 ccttcagccgtctagagagctctttcgcgtgaagtatgtttgccagcttagattgtccat 2801675

                                   
Query: 524     aggccattttatcattgtat 543
               | ||||| || |||| ||||
Sbjct: 2801674 aagccatcttgtcatcgtat 2801655



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 60/67 (89%), Gaps = 1/67 (1%)
 Strand = Plus / Minus

                                                                           
Query: 564     atcaaactgaatcccctttggatatgtatgggaggtgggcaactgatgacaagttcacaa 623
               |||||||| ||| ||||| |||||||||||| ||||| ||||| ||||||||||||||||
Sbjct: 2801550 atcaaactcaattcccttcggatatgtatgg-aggtgagcaaccgatgacaagttcacaa 2801492

                      
Query: 624     tgcgacc 630
               | |||||
Sbjct: 2801491 tacgacc 2801485



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                           
Query: 256     ttgcagtctgcaaagtatttgcctgtcacccccttcagctgagggttgagcccgacgtaa 315
               |||||||| ||||||||||  || ||||| ||||| ||||||||||| || || || || 
Sbjct: 2802377 ttgcagtcagcaaagtattgtccggtcactcccttgagctgagggttcagtcctacatag 2802318

                                   
Query: 316     caagtagtggctgctccctg 335
               ||||| || |||||||||||
Sbjct: 2802317 caagtggtagctgctccctg 2802298



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                           
Query: 190     tcgctgaattcccagagctgcttcgcca 217
               ||||||||||||||||| ||||||||||
Sbjct: 2802443 tcgctgaattcccagagttgcttcgcca 2802416
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>dbj|AP003045.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0030H07
          Length = 168253

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 70/77 (90%)
 Strand = Plus / Minus

                                                                        
Query: 390  aaaggaatgcctcatcaaattggtcatgatcaatccaggatgaacgcaattaactgtgat 449
            |||||| |||||||||||||||||||||||||||||||||||||| || ||||  |||||
Sbjct: 8972 aaaggagtgcctcatcaaattggtcatgatcaatccaggatgaacacagttaatagtgat 8913

                             
Query: 450  gttagctccttcctcct 466
            ||| |||||||| ||||
Sbjct: 8912 gttcgctccttcttcct 8896



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 71/80 (88%)
 Strand = Plus / Minus

                                                                        
Query: 464  ccttgagccgcctagagagctcttttgcgtgcagtatgtttgcaagcttagattgtccat 523
            |||| ||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct: 8732 ccttcagccgtctagagagctctttcgcgtgaagtatgtttgccagcttagattgtccat 8673

                                
Query: 524  aggccattttatcattgtat 543
            | ||||| || |||| ||||
Sbjct: 8672 aagccatcttgtcatcgtat 8653



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 60/67 (89%), Gaps = 1/67 (1%)
 Strand = Plus / Minus

                                                                        
Query: 564  atcaaactgaatcccctttggatatgtatgggaggtgggcaactgatgacaagttcacaa 623
            |||||||| ||| ||||| |||||||||||| ||||| ||||| ||||||||||||||||
Sbjct: 8548 atcaaactcaattcccttcggatatgtatgg-aggtgagcaaccgatgacaagttcacaa 8490

                   
Query: 624  tgcgacc 630
            | |||||
Sbjct: 8489 tacgacc 8483



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                        
Query: 256  ttgcagtctgcaaagtatttgcctgtcacccccttcagctgagggttgagcccgacgtaa 315
            |||||||| ||||||||||  || ||||| ||||| ||||||||||| || || || || 
Sbjct: 9375 ttgcagtcagcaaagtattgtccggtcactcccttgagctgagggttcagtcctacatag 9316

                                
Query: 316  caagtagtggctgctccctg 335
            ||||| || |||||||||||
Sbjct: 9315 caagtggtagctgctccctg 9296



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 190  tcgctgaattcccagagctgcttcgcca 217
            ||||||||||||||||| ||||||||||
Sbjct: 9441 tcgctgaattcccagagttgcttcgcca 9414
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>dbj|AP002522.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0009G03
          Length = 163526

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 70/77 (90%)
 Strand = Plus / Minus

                                                                          
Query: 390    aaaggaatgcctcatcaaattggtcatgatcaatccaggatgaacgcaattaactgtgat 449
              |||||| |||||||||||||||||||||||||||||||||||||| || ||||  |||||
Sbjct: 107651 aaaggagtgcctcatcaaattggtcatgatcaatccaggatgaacacagttaatagtgat 107592

                               
Query: 450    gttagctccttcctcct 466
              ||| |||||||| ||||
Sbjct: 107591 gttcgctccttcttcct 107575



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 71/80 (88%)
 Strand = Plus / Minus

                                                                          
Query: 464    ccttgagccgcctagagagctcttttgcgtgcagtatgtttgcaagcttagattgtccat 523
              |||| ||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||||
Sbjct: 107411 ccttcagccgtctagagagctctttcgcgtgaagtatgtttgccagcttagattgtccat 107352

                                  
Query: 524    aggccattttatcattgtat 543
              | ||||| || |||| ||||
Sbjct: 107351 aagccatcttgtcatcgtat 107332



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 60/67 (89%), Gaps = 1/67 (1%)
 Strand = Plus / Minus

                                                                          
Query: 564    atcaaactgaatcccctttggatatgtatgggaggtgggcaactgatgacaagttcacaa 623
              |||||||| ||| ||||| |||||||||||| ||||| ||||| ||||||||||||||||
Sbjct: 107227 atcaaactcaattcccttcggatatgtatgg-aggtgagcaaccgatgacaagttcacaa 107169

                     
Query: 624    tgcgacc 630
              | |||||
Sbjct: 107168 tacgacc 107162



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                          
Query: 256    ttgcagtctgcaaagtatttgcctgtcacccccttcagctgagggttgagcccgacgtaa 315
              |||||||| ||||||||||  || ||||| ||||| ||||||||||| || || || || 
Sbjct: 108054 ttgcagtcagcaaagtattgtccggtcactcccttgagctgagggttcagtcctacatag 107995

                                  
Query: 316    caagtagtggctgctccctg 335
              ||||| || |||||||||||
Sbjct: 107994 caagtggtagctgctccctg 107975



 Score = 48.1 bits (24), Expect = 0.035
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                          
Query: 190    tcgctgaattcccagagctgcttcgcca 217
              ||||||||||||||||| ||||||||||
Sbjct: 108120 tcgctgaattcccagagttgcttcgcca 108093
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>gb|AC135794.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0084H09, complete sequence
          Length = 130151

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 253   tcgttgcagtctgcaaagtatttgcc 278
             ||||||||||| ||||||||||||||
Sbjct: 53051 tcgttgcagtcggcaaagtatttgcc 53026
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>gb|CP000136.1| Rhizobium etli CFN 42 plasmid p42c, complete sequence
          Length = 250948

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 212    tcgccaaggcgtcgctcttcgc 233
              ||||||||||||||||||||||
Sbjct: 215162 tcgccaaggcgtcgctcttcgc 215183
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 253     tcgttgcagtctgcaaagtatttgcc 278
               ||||||||||| ||||||||||||||
Sbjct: 4081389 tcgttgcagtcggcaaagtatttgcc 4081364
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>dbj|AK071972.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013084L13, full
           insert sequence
          Length = 1409

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 253 tcgttgcagtctgcaaagtatttgcc 278
           ||||||||||| ||||||||||||||
Sbjct: 945 tcgttgcagtcggcaaagtatttgcc 920
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 253     tcgttgcagtctgcaaagtatttgcc 278
               ||||||||||| ||||||||||||||
Sbjct: 4090083 tcgttgcagtcggcaaagtatttgcc 4090058
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>gb|AC116671.14| Mus musculus chromosome 3, clone RP23-111L16, complete sequence
          Length = 207768

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 525   ggccattttatcattgtatgtttt 548
             ||||| ||||||||||||||||||
Sbjct: 91093 ggccagtttatcattgtatgtttt 91116
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>gb|DP000016.1| Pan troglodytes target 1 genomic scaffold
          Length = 1623484

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 437     aattaactgtgatgttagct 456
               ||||||||||||||||||||
Sbjct: 1240087 aattaactgtgatgttagct 1240068
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>gb|AC166331.5| Mus musculus chromosome 3, clone RP23-277D9, complete sequence
          Length = 187537

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 525   ggccattttatcattgtatgtttt 548
             ||||| ||||||||||||||||||
Sbjct: 17250 ggccagtttatcattgtatgtttt 17227
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>gb|AC145405.3| Gorilla gorilla gorilla clone CH255-421A19, complete sequence
          Length = 179099

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 437   aattaactgtgatgttagct 456
             ||||||||||||||||||||
Sbjct: 34107 aattaactgtgatgttagct 34088
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>gb|AC139060.5| Mus musculus chromosome 16, clone RP23-58G17, complete sequence
          Length = 196065

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 57     ccaagtgacaggcttccttc 76
              ||||||||||||||||||||
Sbjct: 126817 ccaagtgacaggcttccttc 126798
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>gb|AC087730.2| Pan troglodytes clone RP43-89H17, complete sequence
          Length = 148293

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 437   aattaactgtgatgttagct 456
             ||||||||||||||||||||
Sbjct: 61731 aattaactgtgatgttagct 61712
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>gb|BT012755.1| Lycopersicon esculentum clone 113699R, mRNA sequence
          Length = 1066

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 481 agctcttttgcgtgcagtatgtttgcaagcttagattgtccata 524
           ||||| ||||| ||||||||||| || ||||| ||||| |||||
Sbjct: 662 agctcatttgcatgcagtatgttggccagctttgattggccata 619
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>gb|AC087555.3| Papio anubis clone RP41-63I4, complete sequence
          Length = 157673

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 437    aattaactgtgatgttagct 456
              ||||||||||||||||||||
Sbjct: 149074 aattaactgtgatgttagct 149055
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>gb|AF287957.6| Homo sapiens chromosome 8 clone CTD-2541M15 map p23.1, complete
             sequence
          Length = 168136

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 89    actgcttgtactgttgctacacac 112
             ||||||| ||||||||||||||||
Sbjct: 16567 actgcttctactgttgctacacac 16590
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>gb|AF530594.1| Petunia integrifolia subsp. inflata putative nitrate-induced NOI
            protein (S1-G261) gene, complete cds
          Length = 3077

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 14   cacgaaaataaaatttattcgtgaacaatatt 45
            ||||| ||||||||||||| ||||| ||||||
Sbjct: 976  cacgagaataaaatttattggtgaaaaatatt 1007
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>gb|AC002465.1| Homo sapiens BAC clone CTA-343P13 from 7, complete sequence
          Length = 155881

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 437   aattaactgtgatgttagct 456
             ||||||||||||||||||||
Sbjct: 97115 aattaactgtgatgttagct 97096
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>gb|AC102689.10| Mus musculus chromosome 12, clone RP24-142L2, complete sequence
          Length = 203221

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 288    cttcagctgagggttgagcc 307
              ||||||||||||||||||||
Sbjct: 197598 cttcagctgagggttgagcc 197579
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>ref|XM_949206.1| Theileria annulata strain Ankara hypothetical protein (TA20700)
            partial mRNA
          Length = 7686

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 366  gacttgaattaccttcatga 385
            ||||||||||||||||||||
Sbjct: 1534 gacttgaattaccttcatga 1553
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>gb|AC165343.3| Mus musculus BAC clone RP23-476C24 from chromosome 17, complete
             sequence
          Length = 190724

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 493   tgcagtatgtttgcaagctt 512
             ||||||||||||||||||||
Sbjct: 47747 tgcagtatgtttgcaagctt 47766
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>gb|AC136507.19| Medicago truncatula clone mth2-24o19, complete sequence
          Length = 131025

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 529   attttatcattgtatgtttt 548
             ||||||||||||||||||||
Sbjct: 96788 attttatcattgtatgtttt 96807
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>gb|AC146941.8| Medicago truncatula clone mth2-133o10, complete sequence
          Length = 134901

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 529   attttatcattgtatgtttt 548
             ||||||||||||||||||||
Sbjct: 61109 attttatcattgtatgtttt 61090
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>gb|AY929909.1| Vannella sp. strain 4362V/II 18S small subunit ribosomal RNA gene,
           partial sequence
          Length = 1955

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 10  caagcacgaaaataaaattt 29
           ||||||||||||||||||||
Sbjct: 523 caagcacgaaaataaaattt 504
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>gb|AC110377.5| Mus musculus BAC clone RP23-460A13 from chromosome 12, complete
             sequence
          Length = 196540

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 288   cttcagctgagggttgagcc 307
             ||||||||||||||||||||
Sbjct: 47691 cttcagctgagggttgagcc 47672
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>gb|DP000005.1| Macaca mulatta target 1 genomic scaffold
          Length = 1678549

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 437     aattaactgtgatgttagct 456
               ||||||||||||||||||||
Sbjct: 1157448 aattaactgtgatgttagct 1157429
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>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI,
             complete sequence
          Length = 1813164

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 256   ttgcagtctgcaaagtattt 275
             ||||||||||||||||||||
Sbjct: 52348 ttgcagtctgcaaagtattt 52367
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>gb|DP000025.1| Gorilla gorilla gorilla target 1 genomic scaffold
          Length = 1787293

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 437     aattaactgtgatgttagct 456
               ||||||||||||||||||||
Sbjct: 1150721 aattaactgtgatgttagct 1150702
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>gb|AC087858.2| Homo sapiens chromosome 3 clone RP11-207E20 map 3p, complete sequence
          Length = 179723

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 59    aagtgacaggcttccttcct 78
             ||||||||||||||||||||
Sbjct: 84229 aagtgacaggcttccttcct 84248
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>gb|AC122151.4| Macaca mulatta clone CH250-492A14, complete sequence
          Length = 170601

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 437    aattaactgtgatgttagct 456
              ||||||||||||||||||||
Sbjct: 148235 aattaactgtgatgttagct 148216
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>gb|AF245226.1|AF245226 Homo sapiens chromosome 21 map 21q21 clone B845I12, complete sequence
          Length = 178237

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 535    tcattgtatgttttcttgtc 554
              ||||||||||||||||||||
Sbjct: 108714 tcattgtatgttttcttgtc 108733
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>dbj|BS000047.1| Pan troglodytes chromosome 22 clone:PTB-109H19, map 22, complete
             sequences
          Length = 214118

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 535   tcattgtatgttttcttgtc 554
             ||||||||||||||||||||
Sbjct: 86748 tcattgtatgttttcttgtc 86767
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>ref|NM_210700.1| Eremothecium gossypii AFL204Cp (AFL204C), mRNA
          Length = 1608

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 256 ttgcagtctgcaaagtattt 275
           ||||||||||||||||||||
Sbjct: 847 ttgcagtctgcaaagtattt 828
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>gb|AY103888.1| Zea mays PCO108132 mRNA sequence
          Length = 1479

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 493 tgcagtatgtttgcaagcttagattgtccata 524
           |||| ||||||||||||||| ||||| |||||
Sbjct: 780 tgcaatatgtttgcaagctttgattgcccata 749
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>dbj|AP001674.1| Homo sapiens genomic DNA, chromosome 21q, section 18/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 535    tcattgtatgttttcttgtc 554
              ||||||||||||||||||||
Sbjct: 245509 tcattgtatgttttcttgtc 245528
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>emb|AL157359.1|HSP19646 Homo sapiens chromosome 21 sequence from PAC RP4-646P19 map 21q21
             region D21S189-LA297, complete sequence
          Length = 121360

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 535   tcattgtatgttttcttgtc 554
             ||||||||||||||||||||
Sbjct: 32299 tcattgtatgttttcttgtc 32280
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>gb|AC122443.4| Mus musculus BAC clone RP24-231K2 from 17, complete sequence
          Length = 146510

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 493    tgcagtatgtttgcaagctt 512
              ||||||||||||||||||||
Sbjct: 126012 tgcagtatgtttgcaagctt 126031
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>emb|AL049753.1|HS3D19 Homo sapiens chromosome 21 Cosmid LLNCO21D193, complete sequence
          Length = 43000

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 535  tcattgtatgttttcttgtc 554
            ||||||||||||||||||||
Sbjct: 5079 tcattgtatgttttcttgtc 5060
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>emb|AL928797.6| Mouse DNA sequence from clone RP23-178B19 on chromosome 2, complete
             sequence
          Length = 166185

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 14    cacgaaaataaaatttattcgtga 37
             ||||||||||||||||||| ||||
Sbjct: 62888 cacgaaaataaaatttatttgtga 62911


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,606,097
Number of Sequences: 3902068
Number of extensions: 5606097
Number of successful extensions: 106108
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 105878
Number of HSP's gapped (non-prelim): 225
length of query: 633
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 610
effective length of database: 17,143,297,704
effective search space: 10457411599440
effective search space used: 10457411599440
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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