ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61a08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470363.1| Oryza sativa (japonica cultivar-group), mRNA 297 2e-77
2dbj|AK070115.1| Oryza sativa (japonica cultivar-group) cDNA clon... 297 2e-77
3gb|AY109139.1| Zea mays PCO147508 mRNA sequence 278 2e-71
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 143 8e-31
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 143 8e-31
6gb|AC104487.3| Oryza sativa chromosome 3 BAC OSJNBa0042I09 genom... 143 8e-31
7ref|XM_483340.1| Oryza sativa (japonica cultivar-group), mRNA 46 0.13
8dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.13
9dbj|AP004761.3| Oryza sativa (japonica cultivar-group) genomic D... 46 0.13
10dbj|AK108596.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.13
11emb|AL355606.14| Human DNA sequence from clone RP11-90I7 on chro... 44 0.53
12gb|AC015994.13| Homo sapiens, clone RP11-328A22, complete sequence 42 2.1
13ref|XM_519606.1| PREDICTED: Pan troglodytes similar to hypotheti... 40 8.3
14ref|NM_145043.1| Homo sapiens nei like 2 (E. coli) (NEIL2), mRNA 40 8.3
15gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 8.3
16gb|AY682784.1| Hepatitis C virus isolate 04220-1 polyprotein gen... 40 8.3
17gb|AY682776.1| Hepatitis C virus isolate 01943-1 polyprotein gen... 40 8.3
18gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 8.3
19emb|CR936849.22| Mouse DNA sequence from clone DN-250A21 on chro... 40 8.3
20gb|AC126688.4| Mus musculus BAC clone RP23-152P20 from chromosom... 40 8.3
21gb|AC126256.4| Mus musculus BAC clone RP24-235B15 from chromosom... 40 8.3
22gb|BC013964.2| Homo sapiens nei like 2 (E. coli), mRNA (cDNA clo... 40 8.3
23gb|BC013952.2| Homo sapiens nei like 2 (E. coli), mRNA (cDNA clo... 40 8.3
24gb|AY306127.1| Homo sapiens nei like 2 (E. coli) (NEIL2) gene, c... 40 8.3
25gb|AF271897.2| Homo sapiens chromosome 8 clone XX-36G5 map 8p23,... 40 8.3
26emb|BX537529.1|HSM806051 Homo sapiens mRNA; cDNA DKFZp686F11102 ... 40 8.3
27emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 8.3
28emb|AJ000009.1|HCVPOLYP Hepatitis C virus complete genome sequence 40 8.3
29emb|CR859018.1| Pongo pygmaeus mRNA; cDNA DKFZp469H151 (from clo... 40 8.3
30gb|AC101690.7| Mus musculus chromosome 7, clone RP23-218E6, comp... 40 8.3
31gb|AF176573.1| Hepatitis C virus polyprotein precursor, gene, co... 40 8.3
32dbj|AB189119.1| Hepatitis C virus subtype 1b NS5B gene for polyp... 40 8.3
33dbj|AB189118.1| Hepatitis C virus subtype 1b NS5B gene for polyp... 40 8.3
34dbj|AB189091.1| Hepatitis C virus subtype 1b NS5B gene for polyp... 40 8.3
35dbj|AB189090.1| Hepatitis C virus subtype 1b NS5B gene for polyp... 40 8.3
36dbj|AB189081.1| Hepatitis C virus subtype 1b NS5B gene for polyp... 40 8.3
37dbj|AB189080.1| Hepatitis C virus subtype 1b NS5B gene for polyp... 40 8.3
38dbj|AK097389.1| Homo sapiens cDNA FLJ40070 fis, clone TESTI2000100 40 8.3
39dbj|AK056206.1| Homo sapiens cDNA FLJ31644 fis, clone NT2RI2003751 40 8.3
40gb|AC069185.7| Homo sapiens chromosome 8, clone RP11-297N6, comp... 40 8.3
41gb|AY044867.1| Hepatitis C virus nonfunctional polyprotein gene,... 40 8.3
42gb|AC025857.5| Homo sapiens chromosome 8, clone RP11-589N15, com... 40 8.3
43dbj|D16435.1|HPCT2 Hepatitis C virus type 2 gene for polyprotein... 40 8.3
44dbj|AB079070.1| Homo sapiens mRNA for hypothetical protein, comp... 40 8.3
45dbj|AB057707.1| Hepatitis C virus gene for RNA-dependent RNA pol... 40 8.3
46dbj|AB057699.1| Hepatitis C virus gene for RNA-dependent RNA pol... 40 8.3
47dbj|AB057686.1| Hepatitis C virus gene for RNA-dependent RNA pol... 40 8.3
48dbj|AB057616.1| Hepatitis C virus gene for RNA-dependent RNA pol... 40 8.3
49dbj|AB057614.1| Hepatitis C virus gene for RNA-dependent RNA pol... 40 8.3
50gb|AF181778.1|AF181778 Phoradendron cf. tonduzii 26S ribosomal R... 40 8.3
51gb|AF181766.1|AF181766 Phoradendron nervosum 26S ribosomal RNA, ... 40 8.3
52gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 8.3
53gb|AF207774.1|AF207774 Hepatitis C virus strain MD33 complete ge... 40 8.3
54gb|AF207772.1|AF207772 Hepatitis C virus strain MD31 complete ge... 40 8.3
55gb|AF207756.1|AF207756 Hepatitis C virus strain MD15 complete ge... 40 8.3
56gb|AF207755.1|AF207755 Hepatitis C virus strain MD14 complete ge... 40 8.3
57gb|AF165062.1|AF165062 Hepatitis C virus strain MD9-2 complete g... 40 8.3
58gb|AF165061.1|AF165061 Hepatitis C virus strain MD9-1 complete g... 40 8.3
59gb|AF165046.1|AF165046 Hepatitis C virus strain MD1-2 complete g... 40 8.3
60gb|AF165045.1|AF165045 Hepatitis C virus strain MD1-1 complete g... 40 8.3
61dbj|D89872.1| Hepatitis C virus RNA for polyprotein, complete cds 40 8.3
62gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 8.3
63gb|AC005932.1|AC005932 Homo sapiens chromosome 19, cosmid R31317... 40 8.3
64dbj|D90208.1|HPCJCG Hepatitis C virus ORF gene, complete cds 40 8.3
65gb|AC149868.2| Mus musculus BAC clone RP23-226I6 from 7, complet... 40 8.3
66dbj|AB049096.1| Hepatitis C virus gene for polyprotein, complete... 40 8.3
67dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 8.3
68emb|AL845310.4| Mouse DNA sequence from clone RP23-64M1 on chrom... 40 8.3
69emb|AL732404.7| Mouse DNA sequence from clone RP23-177D21 on chr... 40 8.3
70dbj|D00586.1|HPCJ12 Hepatitis C virus gene for polyprotein, NS5 ... 40 8.3 
>ref|XM_470363.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 897

 Score =  297 bits (150), Expect = 2e-77
 Identities = 303/354 (85%)
 Strand = Plus / Minus

                                                                       
Query: 234 ttcagtggccgccgtggcggtacaggagcagcgaccggtacacggcggcgaggtggagga 293
           |||||||||| ||||||||||| || ||||| || ||||| || || || ||||||||||
Sbjct: 622 ttcagtggcctccgtggcggtagagcagcagagaacggtagacagcagcaaggtggagga 563

                                                                       
Query: 294 acacgatcaccaggatgaggaagtcgtcaaagaacccaaacagccccagcacgctttcag 353
           ||||||||| ||| | ||||||||| || ||||| |||||||||||||||||| ||||||
Sbjct: 562 acacgatcagcagcacgaggaagtcatcgaagaatccaaacagccccagcacgttttcag 503

                                                                       
Query: 354 gaaggatgtcgactgggctcaggacatagactccgctcaagatcaccatcagaatcatcc 413
           |||| |||||||  |||||||||||||| | | | |||| |   |||||||  | |||||
Sbjct: 502 gaagaatgtcgatggggctcaggacataaattgcactcagggctaccatcatgaccatcc 443

                                                                       
Query: 414 tcgccctgaagacaagtgggagggtcctctggggatccattagttctctgaacagtcttc 473
           ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 442 tcgccctgaagacaagtgggagggtcctctggggatccagtagttccctgaacagtcttc 383

                                                                       
Query: 474 gtatgaaaaatggtaggtcttgcagcctctgggttaggctgcgtggtgctccaccgaata 533
             |||||||| ||||||||||||| |||||| || ||| |||| |||| |||||| ||||
Sbjct: 382 tgatgaaaaagggtaggtcttgcaacctctgagtcaggttgcggggtgttccaccaaata 323

                                                                 
Query: 534 tgtgattgtagtgctgaatctctcccaaaacacgctgaagttggggatcatcat 587
           || | ||||| ||||||| |||||| | |||| |||||| ||| ||||||||||
Sbjct: 322 tgcggttgtaatgctgaacctctcctagaacatgctgaatttgcggatcatcat 269
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>dbj|AK070115.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041E24, full
           insert sequence
          Length = 860

 Score =  297 bits (150), Expect = 2e-77
 Identities = 303/354 (85%)
 Strand = Plus / Minus

                                                                       
Query: 234 ttcagtggccgccgtggcggtacaggagcagcgaccggtacacggcggcgaggtggagga 293
           |||||||||| ||||||||||| || ||||| || ||||| || || || ||||||||||
Sbjct: 639 ttcagtggcctccgtggcggtagagcagcagagaacggtagacagcagcaaggtggagga 580

                                                                       
Query: 294 acacgatcaccaggatgaggaagtcgtcaaagaacccaaacagccccagcacgctttcag 353
           ||||||||| ||| | ||||||||| || ||||| |||||||||||||||||| ||||||
Sbjct: 579 acacgatcagcagcacgaggaagtcatcgaagaatccaaacagccccagcacgttttcag 520

                                                                       
Query: 354 gaaggatgtcgactgggctcaggacatagactccgctcaagatcaccatcagaatcatcc 413
           |||| |||||||  |||||||||||||| | | | |||| |   |||||||  | |||||
Sbjct: 519 gaagaatgtcgatggggctcaggacataaattgcactcagggctaccatcatgaccatcc 460

                                                                       
Query: 414 tcgccctgaagacaagtgggagggtcctctggggatccattagttctctgaacagtcttc 473
           ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 459 tcgccctgaagacaagtgggagggtcctctggggatccagtagttccctgaacagtcttc 400

                                                                       
Query: 474 gtatgaaaaatggtaggtcttgcagcctctgggttaggctgcgtggtgctccaccgaata 533
             |||||||| ||||||||||||| |||||| || ||| |||| |||| |||||| ||||
Sbjct: 399 tgatgaaaaagggtaggtcttgcaacctctgagtcaggttgcggggtgttccaccaaata 340

                                                                 
Query: 534 tgtgattgtagtgctgaatctctcccaaaacacgctgaagttggggatcatcat 587
           || | ||||| ||||||| |||||| | |||| |||||| ||| ||||||||||
Sbjct: 339 tgcggttgtaatgctgaacctctcctagaacatgctgaatttgcggatcatcat 286
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>gb|AY109139.1| Zea mays PCO147508 mRNA sequence
          Length = 873

 Score =  278 bits (140), Expect = 2e-71
 Identities = 275/320 (85%)
 Strand = Plus / Minus

                                                                       
Query: 239 tggccgccgtggcggtacaggagcagcgaccggtacacggcggcgaggtggaggaacacg 298
           ||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct: 617 tggcccccgtggcggtacaggagcaacgaccggtacaccgcggcgaggtggaggaacacg 558

                                                                       
Query: 299 atcaccaggatgaggaagtcgtcaaagaacccaaacagccccagcacgctttcaggaagg 358
           |||| ||||||||| | ||| || | ||| ||||| || ||||||| |||||| ||||| 
Sbjct: 557 atcagcaggatgagcaggtcatcgacgaatccaaagaggcccagcatgctttcgggaaga 498

                                                                       
Query: 359 atgtcgactgggctcaggacatagactccgctcaagatcaccatcagaatcatcctcgcc 418
           |||||||| |||||||| ||||| | | | ||||     |||||||  | ||||| ||||
Sbjct: 497 atgtcgacagggctcagcacataaattgcactcagtgcgaccatcatcagcatccgcgcc 438

                                                                       
Query: 419 ctgaagacaagtgggagggtcctctggggatccattagttctctgaacagtcttcgtatg 478
           ||||| || ||||||||||||| |||||| |||||||||||||||||||||||||| |||
Sbjct: 437 ctgaacacgagtgggagggtccgctgggggtccattagttctctgaacagtcttcggatg 378

                                                                       
Query: 479 aaaaatggtaggtcttgcagcctctgggttaggctgcgtggtgctccaccgaatatgtga 538
           || || ||||||||||||| |||||| ||||||||||||||||||||||| |||||    
Sbjct: 377 aagaagggtaggtcttgcaacctctgagttaggctgcgtggtgctccaccaaatatacag 318

                               
Query: 539 ttgtagtgctgaatctctcc 558
           || |||||||||||||||||
Sbjct: 317 ttatagtgctgaatctctcc 298
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  143 bits (72), Expect = 8e-31
 Identities = 90/96 (93%)
 Strand = Plus / Plus

                                                                            
Query: 409      catcctcgccctgaagacaagtgggagggtcctctggggatccattagttctctgaacag 468
                |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 34952561 catcctcgccctgaagacaagtgggagggtcctctggggatccagtagttccctgaacag 34952620

                                                    
Query: 469      tcttcgtatgaaaaatggtaggtcttgcagcctctg 504
                |||||  |||||||| ||||||||||||| ||||||
Sbjct: 34952621 tcttctgatgaaaaagggtaggtcttgcaacctctg 34952656



 Score =  105 bits (53), Expect = 2e-19
 Identities = 98/113 (86%)
 Strand = Plus / Plus

                                                                            
Query: 234      ttcagtggccgccgtggcggtacaggagcagcgaccggtacacggcggcgaggtggagga 293
                |||||||||| ||||||||||| || ||||| || ||||| || || || ||||||||||
Sbjct: 34952203 ttcagtggcctccgtggcggtagagcagcagagaacggtagacagcagcaaggtggagga 34952262

                                                                     
Query: 294      acacgatcaccaggatgaggaagtcgtcaaagaacccaaacagccccagcacg 346
                ||||||||| ||| | ||||||||| || ||||| ||||||||||||||||||
Sbjct: 34952263 acacgatcagcagcacgaggaagtcatcgaagaatccaaacagccccagcacg 34952315



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                   
Query: 347      ctttcaggaaggatgtcgactgggctcaggacata 381
                ||||||||||| |||||||  ||||||||||||||
Sbjct: 34952403 ctttcaggaagaatgtcgatggggctcaggacata 34952437
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  143 bits (72), Expect = 8e-31
 Identities = 90/96 (93%)
 Strand = Plus / Plus

                                                                            
Query: 409      catcctcgccctgaagacaagtgggagggtcctctggggatccattagttctctgaacag 468
                |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 35042633 catcctcgccctgaagacaagtgggagggtcctctggggatccagtagttccctgaacag 35042692

                                                    
Query: 469      tcttcgtatgaaaaatggtaggtcttgcagcctctg 504
                |||||  |||||||| ||||||||||||| ||||||
Sbjct: 35042693 tcttctgatgaaaaagggtaggtcttgcaacctctg 35042728



 Score =  105 bits (53), Expect = 2e-19
 Identities = 98/113 (86%)
 Strand = Plus / Plus

                                                                            
Query: 234      ttcagtggccgccgtggcggtacaggagcagcgaccggtacacggcggcgaggtggagga 293
                |||||||||| ||||||||||| || ||||| || ||||| || || || ||||||||||
Sbjct: 35042275 ttcagtggcctccgtggcggtagagcagcagagaacggtagacagcagcaaggtggagga 35042334

                                                                     
Query: 294      acacgatcaccaggatgaggaagtcgtcaaagaacccaaacagccccagcacg 346
                ||||||||| ||| | ||||||||| || ||||| ||||||||||||||||||
Sbjct: 35042335 acacgatcagcagcacgaggaagtcatcgaagaatccaaacagccccagcacg 35042387



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                   
Query: 347      ctttcaggaaggatgtcgactgggctcaggacata 381
                ||||||||||| |||||||  ||||||||||||||
Sbjct: 35042475 ctttcaggaagaatgtcgatggggctcaggacata 35042509
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>gb|AC104487.3| Oryza sativa chromosome 3 BAC OSJNBa0042I09 genomic sequence, complete
             sequence
          Length = 171376

 Score =  143 bits (72), Expect = 8e-31
 Identities = 90/96 (93%)
 Strand = Plus / Minus

                                                                         
Query: 409   catcctcgccctgaagacaagtgggagggtcctctggggatccattagttctctgaacag 468
             |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct: 62919 catcctcgccctgaagacaagtgggagggtcctctggggatccagtagttccctgaacag 62860

                                                 
Query: 469   tcttcgtatgaaaaatggtaggtcttgcagcctctg 504
             |||||  |||||||| ||||||||||||| ||||||
Sbjct: 62859 tcttctgatgaaaaagggtaggtcttgcaacctctg 62824



 Score =  105 bits (53), Expect = 2e-19
 Identities = 98/113 (86%)
 Strand = Plus / Minus

                                                                         
Query: 234   ttcagtggccgccgtggcggtacaggagcagcgaccggtacacggcggcgaggtggagga 293
             |||||||||| ||||||||||| || ||||| || ||||| || || || ||||||||||
Sbjct: 63277 ttcagtggcctccgtggcggtagagcagcagagaacggtagacagcagcaaggtggagga 63218

                                                                  
Query: 294   acacgatcaccaggatgaggaagtcgtcaaagaacccaaacagccccagcacg 346
             ||||||||| ||| | ||||||||| || ||||| ||||||||||||||||||
Sbjct: 63217 acacgatcagcagcacgaggaagtcatcgaagaatccaaacagccccagcacg 63165



 Score = 46.1 bits (23), Expect = 0.13
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 347   ctttcaggaaggatgtcgactgggctcaggacata 381
             ||||||||||| |||||||  ||||||||||||||
Sbjct: 63077 ctttcaggaagaatgtcgatggggctcaggacata 63043
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>ref|XM_483340.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 884

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 261 gcagcgaccggtacacggcggcgaggt 287
           ||||||||||| |||||||||||||||
Sbjct: 444 gcagcgaccggaacacggcggcgaggt 418
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 261      gcagcgaccggtacacggcggcgaggt 287
                ||||||||||| |||||||||||||||
Sbjct: 25621952 gcagcgaccggaacacggcggcgaggt 25621978
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>dbj|AP004761.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0686C03
          Length = 164529

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 261    gcagcgaccggtacacggcggcgaggt 287
              ||||||||||| |||||||||||||||
Sbjct: 108643 gcagcgaccggaacacggcggcgaggt 108669
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>dbj|AK108596.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-146-E01, full
           insert sequence
          Length = 884

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 261 gcagcgaccggtacacggcggcgaggt 287
           ||||||||||| |||||||||||||||
Sbjct: 444 gcagcgaccggaacacggcggcgaggt 418
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>emb|AL355606.14| Human DNA sequence from clone RP11-90I7 on chromosome X Contains the gene
              for hepatocellular carcinoma-associated antigen 127
              (HCA127) (FLJ12856, FLJ12856, KIAA1166), complete sequence
          Length = 163283

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 544    gtgctgaatctctcccaaaaca 565
              ||||||||||||||||||||||
Sbjct: 145226 gtgctgaatctctcccaaaaca 145205
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>gb|AC015994.13| Homo sapiens, clone RP11-328A22, complete sequence
          Length = 163186

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 46    tgacaatgagctaaagtacagagtg 70
             ||||||||||||| |||||||||||
Sbjct: 13078 tgacaatgagctacagtacagagtg 13054
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>ref|XM_519606.1| PREDICTED: Pan troglodytes similar to hypothetical protein
           (LOC463992), mRNA
          Length = 822

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 402 tcagaatcatcctcgccctg 421
           ||||||||||||||||||||
Sbjct: 670 tcagaatcatcctcgccctg 651
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>ref|NM_145043.1| Homo sapiens nei like 2 (E. coli) (NEIL2), mRNA
          Length = 2661

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 402 tcagaatcatcctcgccctg 421
           ||||||||||||||||||||
Sbjct: 937 tcagaatcatcctcgccctg 918
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 259    gagcagcgaccggtacacggcggc 282
              |||||||||||||||| |||||||
Sbjct: 671908 gagcagcgaccggtacgcggcggc 671885
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>gb|AY682784.1| Hepatitis C virus isolate 04220-1 polyprotein gene, partial cds
          Length = 1712

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 400  catcagaatcatcctcgccc 419
            ||||||||||||||||||||
Sbjct: 1290 catcagaatcatcctcgccc 1271
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>gb|AY682776.1| Hepatitis C virus isolate 01943-1 polyprotein gene, partial cds
          Length = 1712

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 400  catcagaatcatcctcgccc 419
            ||||||||||||||||||||
Sbjct: 1290 catcagaatcatcctcgccc 1271
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 259     gagcagcgaccggtacacggcggc 282
               |||||||||||||||| |||||||
Sbjct: 3103150 gagcagcgaccggtacgcggcggc 3103173
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>emb|CR936849.22| Mouse DNA sequence from clone DN-250A21 on chromosome 3, complete
             sequence
          Length = 153083

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 449   tccattagttctctgaacag 468
             ||||||||||||||||||||
Sbjct: 10701 tccattagttctctgaacag 10720
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>gb|AC126688.4| Mus musculus BAC clone RP23-152P20 from chromosome 7, complete sequence
          Length = 205673

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 320   tcaaagaacccaaacagccc 339
             ||||||||||||||||||||
Sbjct: 13770 tcaaagaacccaaacagccc 13789
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>gb|AC126256.4| Mus musculus BAC clone RP24-235B15 from chromosome 7, complete sequence
          Length = 188677

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 120    actctcactaacacagggaa 139
              ||||||||||||||||||||
Sbjct: 106980 actctcactaacacagggaa 106961
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>gb|BC013964.2| Homo sapiens nei like 2 (E. coli), mRNA (cDNA clone MGC:4505
           IMAGE:2964742), complete cds
          Length = 2187

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 402 tcagaatcatcctcgccctg 421
           ||||||||||||||||||||
Sbjct: 392 tcagaatcatcctcgccctg 373
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>gb|BC013952.2| Homo sapiens nei like 2 (E. coli), mRNA (cDNA clone MGC:2832
           IMAGE:2964742), complete cds
          Length = 2187

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 402 tcagaatcatcctcgccctg 421
           ||||||||||||||||||||
Sbjct: 392 tcagaatcatcctcgccctg 373
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>gb|AY306127.1| Homo sapiens nei like 2 (E. coli) (NEIL2) gene, complete cds
          Length = 19983

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 402   tcagaatcatcctcgccctg 421
             ||||||||||||||||||||
Sbjct: 11184 tcagaatcatcctcgccctg 11165
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>gb|AF271897.2| Homo sapiens chromosome 8 clone XX-36G5 map 8p23, complete sequence
          Length = 63739

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 402   tcagaatcatcctcgccctg 421
             ||||||||||||||||||||
Sbjct: 29810 tcagaatcatcctcgccctg 29791
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>emb|BX537529.1|HSM806051 Homo sapiens mRNA; cDNA DKFZp686F11102 (from clone DKFZp686F11102);
           complete cds
          Length = 2091

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 402 tcagaatcatcctcgccctg 421
           ||||||||||||||||||||
Sbjct: 346 tcagaatcatcctcgccctg 327
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 259     gagcagcgaccggtacacggcggc 282
               |||||||||||||||| |||||||
Sbjct: 2833228 gagcagcgaccggtacgcggcggc 2833251
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>emb|AJ000009.1|HCVPOLYP Hepatitis C virus complete genome sequence
          Length = 9379

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 400  catcagaatcatcctcgccc 419
            ||||||||||||||||||||
Sbjct: 8859 catcagaatcatcctcgccc 8840
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>emb|CR859018.1| Pongo pygmaeus mRNA; cDNA DKFZp469H151 (from clone DKFZp469H151)
          Length = 2403

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 402 tcagaatcatcctcgccctg 421
           ||||||||||||||||||||
Sbjct: 605 tcagaatcatcctcgccctg 586
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>gb|AC101690.7| Mus musculus chromosome 7, clone RP23-218E6, complete sequence
          Length = 229964

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 320    tcaaagaacccaaacagccc 339
              ||||||||||||||||||||
Sbjct: 213056 tcaaagaacccaaacagccc 213075
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>gb|AF176573.1| Hepatitis C virus polyprotein precursor, gene, complete cds
          Length = 9600

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 400  catcagaatcatcctcgccc 419
            ||||||||||||||||||||
Sbjct: 8876 catcagaatcatcctcgccc 8857
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>dbj|AB189119.1| Hepatitis C virus subtype 1b NS5B gene for polyprotein, partial
           cds, clone: C18_OH0
          Length = 584

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 400 catcagaatcatcctcgccc 419
           ||||||||||||||||||||
Sbjct: 180 catcagaatcatcctcgccc 161
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>dbj|AB189118.1| Hepatitis C virus subtype 1b NS5B gene for polyprotein, partial
           cds, clone: C18_OH24
          Length = 584

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 400 catcagaatcatcctcgccc 419
           ||||||||||||||||||||
Sbjct: 180 catcagaatcatcctcgccc 161
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>dbj|AB189091.1| Hepatitis C virus subtype 1b NS5B gene for polyprotein, partial cds,
            clone: OY8M
          Length = 1682

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 400  catcagaatcatcctcgccc 419
            ||||||||||||||||||||
Sbjct: 1278 catcagaatcatcctcgccc 1259
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>dbj|AB189090.1| Hepatitis C virus subtype 1b NS5B gene for polyprotein, partial cds,
            clone: OY0
          Length = 1682

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 400  catcagaatcatcctcgccc 419
            ||||||||||||||||||||
Sbjct: 1278 catcagaatcatcctcgccc 1259
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>dbj|AB189081.1| Hepatitis C virus subtype 1b NS5B gene for polyprotein, partial cds,
            clone: AY8M
          Length = 1682

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 400  catcagaatcatcctcgccc 419
            ||||||||||||||||||||
Sbjct: 1278 catcagaatcatcctcgccc 1259
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>dbj|AB189080.1| Hepatitis C virus subtype 1b NS5B gene for polyprotein, partial cds,
            clone: AY0
          Length = 1682

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 400  catcagaatcatcctcgccc 419
            ||||||||||||||||||||
Sbjct: 1278 catcagaatcatcctcgccc 1259
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>dbj|AK097389.1| Homo sapiens cDNA FLJ40070 fis, clone TESTI2000100
          Length = 2015

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 402 tcagaatcatcctcgccctg 421
           ||||||||||||||||||||
Sbjct: 292 tcagaatcatcctcgccctg 273
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>dbj|AK056206.1| Homo sapiens cDNA FLJ31644 fis, clone NT2RI2003751
          Length = 2661

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 402 tcagaatcatcctcgccctg 421
           ||||||||||||||||||||
Sbjct: 937 tcagaatcatcctcgccctg 918
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>gb|AC069185.7| Homo sapiens chromosome 8, clone RP11-297N6, complete sequence
          Length = 169079

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 402    tcagaatcatcctcgccctg 421
              ||||||||||||||||||||
Sbjct: 103723 tcagaatcatcctcgccctg 103704
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>gb|AY044867.1| Hepatitis C virus nonfunctional polyprotein gene, partial sequence
          Length = 5137

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 400  catcagaatcatcctcgccc 419
            ||||||||||||||||||||
Sbjct: 4652 catcagaatcatcctcgccc 4633
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>gb|AC025857.5| Homo sapiens chromosome 8, clone RP11-589N15, complete sequence
          Length = 175749

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 402   tcagaatcatcctcgccctg 421
             ||||||||||||||||||||
Sbjct: 47343 tcagaatcatcctcgccctg 47324
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>dbj|D16435.1|HPCT2 Hepatitis C virus type 2 gene for polyprotein precursor
            (NS2-NS3-NS4A-NS4B-NS5A-NS5B), complete cds
          Length = 6935

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 400  catcagaatcatcctcgccc 419
            ||||||||||||||||||||
Sbjct: 6367 catcagaatcatcctcgccc 6348
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>dbj|AB079070.1| Homo sapiens mRNA for hypothetical protein, complete cds, similar
           to FLJ31644
          Length = 999

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 402 tcagaatcatcctcgccctg 421
           ||||||||||||||||||||
Sbjct: 347 tcagaatcatcctcgccctg 328
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>dbj|AB057707.1| Hepatitis C virus gene for RNA-dependent RNA polymerase, thumb
           domain region, partial cds, clone:pt.15t
          Length = 474

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 400 catcagaatcatcctcgccc 419
           ||||||||||||||||||||
Sbjct: 168 catcagaatcatcctcgccc 149
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>dbj|AB057699.1| Hepatitis C virus gene for RNA-dependent RNA polymerase, thumb
           domain region, partial cds, clone:pt. 7t
          Length = 474

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 400 catcagaatcatcctcgccc 419
           ||||||||||||||||||||
Sbjct: 168 catcagaatcatcctcgccc 149
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>dbj|AB057686.1| Hepatitis C virus gene for RNA-dependent RNA polymerase, partial cds,
            clone:pt.27
          Length = 1773

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 400  catcagaatcatcctcgccc 419
            ||||||||||||||||||||
Sbjct: 1278 catcagaatcatcctcgccc 1259
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>dbj|AB057616.1| Hepatitis C virus gene for RNA-dependent RNA polymerase, partial cds,
            clone:pt. 19
          Length = 1773

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 400  catcagaatcatcctcgccc 419
            ||||||||||||||||||||
Sbjct: 1278 catcagaatcatcctcgccc 1259
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>dbj|AB057614.1| Hepatitis C virus gene for RNA-dependent RNA polymerase, partial cds,
            clone:pt. 17
          Length = 1773

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 400  catcagaatcatcctcgccc 419
            ||||||||||||||||||||
Sbjct: 1278 catcagaatcatcctcgccc 1259
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>gb|AF181778.1|AF181778 Phoradendron cf. tonduzii 26S ribosomal RNA, partial sequence
          Length = 373

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 94  ccagcaaaccgaaataaggccgctccac 121
           |||||||||||||||||| ||| |||||
Sbjct: 201 ccagcaaaccgaaataagaccgttccac 174
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>gb|AF181766.1|AF181766 Phoradendron nervosum 26S ribosomal RNA, partial sequence
          Length = 365

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 94  ccagcaaaccgaaataaggccgctccac 121
           |||||||||||||||||| ||| |||||
Sbjct: 193 ccagcaaaccgaaataagaccgttccac 166
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 276     cggcggcgaggtggaggaacacga 299
               |||||||||||| |||||||||||
Sbjct: 2536260 cggcggcgaggtagaggaacacga 2536237
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>gb|AF207774.1|AF207774 Hepatitis C virus strain MD33 complete genome
          Length = 9379

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 400  catcagaatcatcctcgccc 419
            ||||||||||||||||||||
Sbjct: 8864 catcagaatcatcctcgccc 8845
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>gb|AF207772.1|AF207772 Hepatitis C virus strain MD31 complete genome
          Length = 9379

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 400  catcagaatcatcctcgccc 419
            ||||||||||||||||||||
Sbjct: 8864 catcagaatcatcctcgccc 8845
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>gb|AF207756.1|AF207756 Hepatitis C virus strain MD15 complete genome
          Length = 9377

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 400  catcagaatcatcctcgccc 419
            ||||||||||||||||||||
Sbjct: 8864 catcagaatcatcctcgccc 8845
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>gb|AF207755.1|AF207755 Hepatitis C virus strain MD14 complete genome
          Length = 9379

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 400  catcagaatcatcctcgccc 419
            ||||||||||||||||||||
Sbjct: 8864 catcagaatcatcctcgccc 8845
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>gb|AF165062.1|AF165062 Hepatitis C virus strain MD9-2 complete genome
          Length = 9379

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 400  catcagaatcatcctcgccc 419
            ||||||||||||||||||||
Sbjct: 8864 catcagaatcatcctcgccc 8845
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>gb|AF165061.1|AF165061 Hepatitis C virus strain MD9-1 complete genome
          Length = 9379

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 400  catcagaatcatcctcgccc 419
            ||||||||||||||||||||
Sbjct: 8864 catcagaatcatcctcgccc 8845
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>gb|AF165046.1|AF165046 Hepatitis C virus strain MD1-2 complete genome
          Length = 9389

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 400  catcagaatcatcctcgccc 419
            ||||||||||||||||||||
Sbjct: 8864 catcagaatcatcctcgccc 8845
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>gb|AF165045.1|AF165045 Hepatitis C virus strain MD1-1 complete genome
          Length = 9389

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 400  catcagaatcatcctcgccc 419
            ||||||||||||||||||||
Sbjct: 8864 catcagaatcatcctcgccc 8845
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>dbj|D89872.1| Hepatitis C virus RNA for polyprotein, complete cds
          Length = 9033

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 400  catcagaatcatcctcgccc 419
            ||||||||||||||||||||
Sbjct: 8535 catcagaatcatcctcgccc 8516
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 259     gagcagcgaccggtacacggcggc 282
               |||||||||||||||| |||||||
Sbjct: 2044323 gagcagcgaccggtacgcggcggc 2044300
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>gb|AC005932.1|AC005932 Homo sapiens chromosome 19, cosmid R31317, complete sequence
          Length = 41696

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 77    catcatccatgatccaccca 96
             ||||||||||||||||||||
Sbjct: 12398 catcatccatgatccaccca 12417
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>dbj|D90208.1|HPCJCG Hepatitis C virus ORF gene, complete cds
          Length = 9413

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 400  catcagaatcatcctcgccc 419
            ||||||||||||||||||||
Sbjct: 8864 catcagaatcatcctcgccc 8845
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>gb|AC149868.2| Mus musculus BAC clone RP23-226I6 from 7, complete sequence
          Length = 190971

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 120   actctcactaacacagggaa 139
             ||||||||||||||||||||
Sbjct: 48394 actctcactaacacagggaa 48375
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>dbj|AB049096.1| Hepatitis C virus gene for polyprotein, complete cds, isolate:HCVT191
          Length = 9344

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 400  catcagaatcatcctcgccc 419
            ||||||||||||||||||||
Sbjct: 8845 catcagaatcatcctcgccc 8826
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 274     cacggcggcgaggtggagga 293
               ||||||||||||||||||||
Sbjct: 2743167 cacggcggcgaggtggagga 2743148
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>emb|AL845310.4| Mouse DNA sequence from clone RP23-64M1 on chromosome 3, complete
             sequence
          Length = 122356

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 449   tccattagttctctgaacag 468
             ||||||||||||||||||||
Sbjct: 73860 tccattagttctctgaacag 73879
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>emb|AL732404.7| Mouse DNA sequence from clone RP23-177D21 on chromosome 2, complete
              sequence
          Length = 220275

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 45     gtgacaatgagctaaagtacagag 68
              |||||||||||||| |||||||||
Sbjct: 100216 gtgacaatgagctacagtacagag 100193
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>dbj|D00586.1|HPCJ12 Hepatitis C virus gene for polyprotein, NS5 region, partial cds,
           isolate:HCV-J1
          Length = 235

 Score = 40.1 bits (20), Expect = 8.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 400 catcagaatcatcctcgccc 419
           ||||||||||||||||||||
Sbjct: 187 catcagaatcatcctcgccc 168


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,716,491
Number of Sequences: 3902068
Number of extensions: 4716491
Number of successful extensions: 76885
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76499
Number of HSP's gapped (non-prelim): 385
length of query: 609
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 586
effective length of database: 17,143,297,704
effective search space: 10045972454544
effective search space used: 10045972454544
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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