ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah60k15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SEY1_YARLI (Q6C3B0) Protein SEY1 30 7.3
2CPXC_AGRTU (P24466) Cytochrome P450-pinF1, plant-inducible (EC 1... 30 7.3
3ROBO3_HUMAN (Q96MS0) Roundabout homolog 3 precursor (Roundabout-... 30 9.5

>SEY1_YARLI (Q6C3B0) Protein SEY1|
          Length = 938

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 610 ASKKLPAMSPSILGSPSPATTSFVPCIQKTRRLT 509
           A K +PA SP    +P+PA +  VP  QK+ + T
Sbjct: 123 AEKSIPASSPVHKAAPTPAASHAVPTSQKSAKST 156



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>CPXC_AGRTU (P24466) Cytochrome P450-pinF1, plant-inducible (EC 1.14.-.-)|
          Length = 422

 Score = 30.0 bits (66), Expect = 7.3
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 607 SKKLPAMS-PSILGSPSPATTSFVPCIQKTRRLTSVVWRD 491
           + +LPA++  S+LG PS  T  F   + K  R  S  WRD
Sbjct: 158 ASQLPALTIASVLGLPSEDTPFFTRLVYKVSRCLSPSWRD 197



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>ROBO3_HUMAN (Q96MS0) Roundabout homolog 3 precursor (Roundabout-like protein 3)|
          Length = 1386

 Score = 29.6 bits (65), Expect = 9.5
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -2

Query: 682  RSPLVGSLVANTSRSSLGVL-ARVAASKKLPAMSPSILGSPSPATTSFVP 536
            R PL  S   + S+  LG+  AR A     PA SP +  SP+P+T S  P
Sbjct: 1179 RVPLGPSSPLSVSQPMLGIREARPAGLGAGPAASPHLSPSPAPSTASSAP 1228


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,782,079
Number of Sequences: 219361
Number of extensions: 1909056
Number of successful extensions: 5245
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5245
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7196276819
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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