ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah60k14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IL6RB_RAT (P40190) Interleukin-6 receptor beta chain precursor (... 32 1.9
2MNT_MOUSE (O08789) Max-binding protein MNT (Protein ROX) (Myc an... 30 4.3
3MSH5_RAT (Q6MG62) MutS protein homolog 5 30 5.7
4OR7A5_HUMAN (Q15622) Olfactory receptor 7A5 (Olfactory receptor ... 29 9.7

>IL6RB_RAT (P40190) Interleukin-6 receptor beta chain precursor (IL-6R-beta)|
           (Interleukin 6 signal transducer) (Membrane glycoprotein
           130) (gp130) (CD130 antigen)
          Length = 918

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
 Frame = +1

Query: 304 DTIILVH-----QESPETSMEFTMYAKRGATTSVHRAMSPFMCGFILTTLMSGLWCGRSR 468
           DT+ +VH     +E  +   EFT    + A   +   + P    F+LTTL+  L+C   R
Sbjct: 584 DTLYMVHMAAYTEEGGKDGPEFTFTTLKFAQGEIEAIVVPVCLAFLLTTLLGVLFCFNKR 643



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>MNT_MOUSE (O08789) Max-binding protein MNT (Protein ROX) (Myc antagonist MNT)|
          Length = 591

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +2

Query: 497 QPPACRTE---PHPRPATPRLMCVPSPVEVEAMSCGAALPPVH 616
           QPP  +T    P P PATP    VP+PV + A + G +    H
Sbjct: 404 QPPQQKTPLPGPPPPPATPTQTLVPAPVHLVATAGGGSTVIAH 446



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>MSH5_RAT (Q6MG62) MutS protein homolog 5|
          Length = 831

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 19/62 (30%), Positives = 26/62 (41%)
 Frame = -1

Query: 461 RPHHSPLISVVKMKPHMKGLIALCTLVVAPLFAYMVNSMDVSGLSWCTRIMVSCGVSGAL 282
           RPH+SP I  V++K     L+ LC     P      NS D  G     +++     SG  
Sbjct: 543 RPHYSPCIQGVRIKNGRHPLMELCARTFVP------NSTDCGGDQGRVKVITGPNSSGKS 596

Query: 281 TY 276
            Y
Sbjct: 597 IY 598



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>OR7A5_HUMAN (Q15622) Olfactory receptor 7A5 (Olfactory receptor TPCR92)|
          Length = 319

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 15/47 (31%), Positives = 29/47 (61%)
 Frame = -1

Query: 446 PLISVVKMKPHMKGLIALCTLVVAPLFAYMVNSMDVSGLSWCTRIMV 306
           PL  +V M PH+ GL+ L +  ++ L++ ++  + V  LS+CT + +
Sbjct: 129 PLHYMVIMNPHLCGLLVLASWTMSALYS-LLQILMVVRLSFCTALEI 174


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,575,289
Number of Sequences: 219361
Number of extensions: 2048649
Number of successful extensions: 5705
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5694
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5596027262
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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