ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah60f19 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY266444.1| Hordeum vulgare MLA7 (Mla7) mRNA, complete cds Length = 3761 Score = 680 bits (343), Expect = 0.0 Identities = 426/451 (94%), Gaps = 2/451 (0%) Strand = Plus / Minus Query: 1 acatgcaaaacagagcagcaacgatggccctcaactaaagaaaagcaaagctatccttgt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3607 acatgcaaaacagagcagcaacgatggccctcaactaaagaaaagcaaagctatccttgt 3548 Query: 61 aaggatcaattcaccccaacacccttgcttattcattacaaaacaaaaccatgtttcttt 120 |||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||| Sbjct: 3547 aaggatcaattcaccccaacacccttacttattcattacaaaacaaaacaatgtctcttc 3488 Query: 121 ctgcaagctgagtgccatttaaaagaagctcatcacacaagttccagcaaagttcgaaac 180 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 3487 ttgcaagctgagtgccatttaaaagaagctcatcacacaagttccagcaaagtttgaaac 3428 Query: 181 atttgcatggtcagcgcccgcccgaactgtttgtgaaacaagcatctctgatgccaccag 240 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 3427 atttgcatggtcagcgcccgaccgaactgtttgtgaaacaagcatctctgatgccaccag 3368 Query: 241 ctgtaactccaacgccccgcgccgctgctacctcgagagcacatctgatgcaatgtgagt 300 ||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||| Sbjct: 3367 ctgtaaccccaacgccccacgccgctgctacctc-agagcacatctgatgcaatgtgagt 3309 Query: 301 cgctctggatcagaaattagttctcctcctcgccctcacacaaatcgtcatcatgagcac 360 ||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||| Sbjct: 3308 cgctctggatcagaaatcagttctcctcctc-tcctcacacaaatcatcatcatgagcac 3250 Query: 361 cttctgctatacacggcctcatgtcaatataaatccggagatggtcgggatgagcttcct 420 |||||||||||||||||||||| |||||||||||| || ||||| |||||| || || Sbjct: 3249 cttctgctatacacggcctcatctcaatataaatcgggggatggctgggatgggcgtcga 3190 Query: 421 gggcacgcctcagcgcagccttcgcttcctt 451 |||||||||||| |||||||| ||||||||| Sbjct: 3189 gggcacgcctcaccgcagcctccgcttcctt 3159
>gb|AF523683.1| Hordeum vulgare CC-NBS-LRR resistance protein MLA13 mRNA, complete cds; alternatively spliced Length = 3617 Score = 648 bits (327), Expect = 0.0 Identities = 422/451 (93%), Gaps = 2/451 (0%) Strand = Plus / Minus Query: 1 acatgcaaaacagagcagcaacgatggccctcaactaaagaaaagcaaagctatccttgt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3499 acatgcaaaacagagcagcaacgatggccctcaactaaagaaaagcaaagctatccttgt 3440 Query: 61 aaggatcaattcaccccaacacccttgcttattcattacaaaacaaaaccatgtttcttt 120 |||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||| Sbjct: 3439 aaggatcaattcaccccaacacccttacttattcattacaaaacaaaacaatgtctcttc 3380 Query: 121 ctgcaagctgagtgccatttaaaagaagctcatcacacaagttccagcaaagttcgaaac 180 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 3379 ttgcaagctgagtgccatttaaaagaagctcatcacacaagttccagcaaagtttgaaac 3320 Query: 181 atttgcatggtcagcgcccgcccgaactgtttgtgaaacaagcatctctgatgccaccag 240 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 3319 atttgcatggtcagcgcccgaccgaactgtttgtgaaacaagcatctctgatgccaccag 3260 Query: 241 ctgtaactccaacgccccgcgccgctgctacctcgagagcacatctgatgcaatgtgagt 300 ||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||| Sbjct: 3259 ctgtaaccccaacgccccacgccgctgctacctc-agagcacatctgatgcaatgtgagt 3201 Query: 301 cgctctggatcagaaattagttctcctcctcgccctcacacaaatcgtcatcatgagcac 360 ||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||| Sbjct: 3200 cgctctggatcagaaatcagttctcctcctc-tcctcacacaaatcatcatcatgagcac 3142 Query: 361 cttctgctatacacggcctcatgtcaatataaatccggagatggtcgggatgagcttcct 420 ||| ||||||| ||||||||| |||| ||||||| || ||||| |||||| || || Sbjct: 3141 cttttgctatatgcggcctcatctcaaaataaatcgggggatggctgggatgggcgtcga 3082 Query: 421 gggcacgcctcagcgcagccttcgcttcctt 451 |||||||||||| |||||||| ||||||||| Sbjct: 3081 gggcacgcctcaccgcagcctccgcttcctt 3051
>gb|AF523682.1| Hordeum vulgare CC-NBS-LRR resistance protein MLA13 mRNA, complete cds; alternatively spliced Length = 3719 Score = 648 bits (327), Expect = 0.0 Identities = 422/451 (93%), Gaps = 2/451 (0%) Strand = Plus / Minus Query: 1 acatgcaaaacagagcagcaacgatggccctcaactaaagaaaagcaaagctatccttgt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3601 acatgcaaaacagagcagcaacgatggccctcaactaaagaaaagcaaagctatccttgt 3542 Query: 61 aaggatcaattcaccccaacacccttgcttattcattacaaaacaaaaccatgtttcttt 120 |||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||| Sbjct: 3541 aaggatcaattcaccccaacacccttacttattcattacaaaacaaaacaatgtctcttc 3482 Query: 121 ctgcaagctgagtgccatttaaaagaagctcatcacacaagttccagcaaagttcgaaac 180 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 3481 ttgcaagctgagtgccatttaaaagaagctcatcacacaagttccagcaaagtttgaaac 3422 Query: 181 atttgcatggtcagcgcccgcccgaactgtttgtgaaacaagcatctctgatgccaccag 240 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 3421 atttgcatggtcagcgcccgaccgaactgtttgtgaaacaagcatctctgatgccaccag 3362 Query: 241 ctgtaactccaacgccccgcgccgctgctacctcgagagcacatctgatgcaatgtgagt 300 ||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||| Sbjct: 3361 ctgtaaccccaacgccccacgccgctgctacctc-agagcacatctgatgcaatgtgagt 3303 Query: 301 cgctctggatcagaaattagttctcctcctcgccctcacacaaatcgtcatcatgagcac 360 ||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||| Sbjct: 3302 cgctctggatcagaaatcagttctcctcctc-tcctcacacaaatcatcatcatgagcac 3244 Query: 361 cttctgctatacacggcctcatgtcaatataaatccggagatggtcgggatgagcttcct 420 ||| ||||||| ||||||||| |||| ||||||| || ||||| |||||| || || Sbjct: 3243 cttttgctatatgcggcctcatctcaaaataaatcgggggatggctgggatgggcgtcga 3184 Query: 421 gggcacgcctcagcgcagccttcgcttcctt 451 |||||||||||| |||||||| ||||||||| Sbjct: 3183 gggcacgcctcaccgcagcctccgcttcctt 3153
>gb|AF523681.1| Hordeum vulgare CC-NBS-LRR resistance protein MLA13 mRNA, complete cds; alternatively spliced Length = 3716 Score = 648 bits (327), Expect = 0.0 Identities = 422/451 (93%), Gaps = 2/451 (0%) Strand = Plus / Minus Query: 1 acatgcaaaacagagcagcaacgatggccctcaactaaagaaaagcaaagctatccttgt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3598 acatgcaaaacagagcagcaacgatggccctcaactaaagaaaagcaaagctatccttgt 3539 Query: 61 aaggatcaattcaccccaacacccttgcttattcattacaaaacaaaaccatgtttcttt 120 |||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||| Sbjct: 3538 aaggatcaattcaccccaacacccttacttattcattacaaaacaaaacaatgtctcttc 3479 Query: 121 ctgcaagctgagtgccatttaaaagaagctcatcacacaagttccagcaaagttcgaaac 180 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 3478 ttgcaagctgagtgccatttaaaagaagctcatcacacaagttccagcaaagtttgaaac 3419 Query: 181 atttgcatggtcagcgcccgcccgaactgtttgtgaaacaagcatctctgatgccaccag 240 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 3418 atttgcatggtcagcgcccgaccgaactgtttgtgaaacaagcatctctgatgccaccag 3359 Query: 241 ctgtaactccaacgccccgcgccgctgctacctcgagagcacatctgatgcaatgtgagt 300 ||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||| Sbjct: 3358 ctgtaaccccaacgccccacgccgctgctacctc-agagcacatctgatgcaatgtgagt 3300 Query: 301 cgctctggatcagaaattagttctcctcctcgccctcacacaaatcgtcatcatgagcac 360 ||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||| Sbjct: 3299 cgctctggatcagaaatcagttctcctcctc-tcctcacacaaatcatcatcatgagcac 3241 Query: 361 cttctgctatacacggcctcatgtcaatataaatccggagatggtcgggatgagcttcct 420 ||| ||||||| ||||||||| |||| ||||||| || ||||| |||||| || || Sbjct: 3240 cttttgctatatgcggcctcatctcaaaataaatcgggggatggctgggatgggcgtcga 3181 Query: 421 gggcacgcctcagcgcagccttcgcttcctt 451 |||||||||||| |||||||| ||||||||| Sbjct: 3180 gggcacgcctcaccgcagcctccgcttcctt 3150
>gb|AF523680.1| Hordeum vulgare CC-NBS-LRR resistance protein MLA13 mRNA, complete cds; alternatively spliced Length = 3614 Score = 648 bits (327), Expect = 0.0 Identities = 422/451 (93%), Gaps = 2/451 (0%) Strand = Plus / Minus Query: 1 acatgcaaaacagagcagcaacgatggccctcaactaaagaaaagcaaagctatccttgt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3496 acatgcaaaacagagcagcaacgatggccctcaactaaagaaaagcaaagctatccttgt 3437 Query: 61 aaggatcaattcaccccaacacccttgcttattcattacaaaacaaaaccatgtttcttt 120 |||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||| Sbjct: 3436 aaggatcaattcaccccaacacccttacttattcattacaaaacaaaacaatgtctcttc 3377 Query: 121 ctgcaagctgagtgccatttaaaagaagctcatcacacaagttccagcaaagttcgaaac 180 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 3376 ttgcaagctgagtgccatttaaaagaagctcatcacacaagttccagcaaagtttgaaac 3317 Query: 181 atttgcatggtcagcgcccgcccgaactgtttgtgaaacaagcatctctgatgccaccag 240 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 3316 atttgcatggtcagcgcccgaccgaactgtttgtgaaacaagcatctctgatgccaccag 3257 Query: 241 ctgtaactccaacgccccgcgccgctgctacctcgagagcacatctgatgcaatgtgagt 300 ||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||| Sbjct: 3256 ctgtaaccccaacgccccacgccgctgctacctc-agagcacatctgatgcaatgtgagt 3198 Query: 301 cgctctggatcagaaattagttctcctcctcgccctcacacaaatcgtcatcatgagcac 360 ||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||| Sbjct: 3197 cgctctggatcagaaatcagttctcctcctc-tcctcacacaaatcatcatcatgagcac 3139 Query: 361 cttctgctatacacggcctcatgtcaatataaatccggagatggtcgggatgagcttcct 420 ||| ||||||| ||||||||| |||| ||||||| || ||||| |||||| || || Sbjct: 3138 cttttgctatatgcggcctcatctcaaaataaatcgggggatggctgggatgggcgtcga 3079 Query: 421 gggcacgcctcagcgcagccttcgcttcctt 451 |||||||||||| |||||||| ||||||||| Sbjct: 3078 gggcacgcctcaccgcagcctccgcttcctt 3048
>gb|AF523679.1| Hordeum vulgare CC-NBS-LRR resistance protein MLA13 mRNA, complete cds; alternatively spliced Length = 3727 Score = 648 bits (327), Expect = 0.0 Identities = 422/451 (93%), Gaps = 2/451 (0%) Strand = Plus / Minus Query: 1 acatgcaaaacagagcagcaacgatggccctcaactaaagaaaagcaaagctatccttgt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3609 acatgcaaaacagagcagcaacgatggccctcaactaaagaaaagcaaagctatccttgt 3550 Query: 61 aaggatcaattcaccccaacacccttgcttattcattacaaaacaaaaccatgtttcttt 120 |||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||| Sbjct: 3549 aaggatcaattcaccccaacacccttacttattcattacaaaacaaaacaatgtctcttc 3490 Query: 121 ctgcaagctgagtgccatttaaaagaagctcatcacacaagttccagcaaagttcgaaac 180 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 3489 ttgcaagctgagtgccatttaaaagaagctcatcacacaagttccagcaaagtttgaaac 3430 Query: 181 atttgcatggtcagcgcccgcccgaactgtttgtgaaacaagcatctctgatgccaccag 240 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 3429 atttgcatggtcagcgcccgaccgaactgtttgtgaaacaagcatctctgatgccaccag 3370 Query: 241 ctgtaactccaacgccccgcgccgctgctacctcgagagcacatctgatgcaatgtgagt 300 ||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||| Sbjct: 3369 ctgtaaccccaacgccccacgccgctgctacctc-agagcacatctgatgcaatgtgagt 3311 Query: 301 cgctctggatcagaaattagttctcctcctcgccctcacacaaatcgtcatcatgagcac 360 ||||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||| Sbjct: 3310 cgctctggatcagaaatcagttctcctcctc-tcctcacacaaatcatcatcatgagcac 3252 Query: 361 cttctgctatacacggcctcatgtcaatataaatccggagatggtcgggatgagcttcct 420 ||| ||||||| ||||||||| |||| ||||||| || ||||| |||||| || || Sbjct: 3251 cttttgctatatgcggcctcatctcaaaataaatcgggggatggctgggatgggcgtcga 3192 Query: 421 gggcacgcctcagcgcagccttcgcttcctt 451 |||||||||||| |||||||| ||||||||| Sbjct: 3191 gggcacgcctcaccgcagcctccgcttcctt 3161
>emb|AJ302293.1|HVU302293 Hordeum vulgare Mla6 gene, exons 1-5 Length = 8074 Score = 541 bits (273), Expect = e-151 Identities = 273/273 (100%) Strand = Plus / Minus Query: 1 acatgcaaaacagagcagcaacgatggccctcaactaaagaaaagcaaagctatccttgt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6997 acatgcaaaacagagcagcaacgatggccctcaactaaagaaaagcaaagctatccttgt 6938 Query: 61 aaggatcaattcaccccaacacccttgcttattcattacaaaacaaaaccatgtttcttt 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6937 aaggatcaattcaccccaacacccttgcttattcattacaaaacaaaaccatgtttcttt 6878 Query: 121 ctgcaagctgagtgccatttaaaagaagctcatcacacaagttccagcaaagttcgaaac 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6877 ctgcaagctgagtgccatttaaaagaagctcatcacacaagttccagcaaagttcgaaac 6818 Query: 181 atttgcatggtcagcgcccgcccgaactgtttgtgaaacaagcatctctgatgccaccag 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6817 atttgcatggtcagcgcccgcccgaactgtttgtgaaacaagcatctctgatgccaccag 6758 Query: 241 ctgtaactccaacgccccgcgccgctgctacct 273 ||||||||||||||||||||||||||||||||| Sbjct: 6757 ctgtaactccaacgccccgcgccgctgctacct 6725 Score = 188 bits (95), Expect = 1e-44 Identities = 95/95 (100%) Strand = Plus / Minus Query: 269 tacctcgagagcacatctgatgcaatgtgagtcgctctggatcagaaattagttctcctc 328 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5730 tacctcgagagcacatctgatgcaatgtgagtcgctctggatcagaaattagttctcctc 5671 Query: 329 ctcgccctcacacaaatcgtcatcatgagcacctt 363 ||||||||||||||||||||||||||||||||||| Sbjct: 5670 ctcgccctcacacaaatcgtcatcatgagcacctt 5636 Score = 184 bits (93), Expect = 2e-43 Identities = 93/93 (100%) Strand = Plus / Minus Query: 359 accttctgctatacacggcctcatgtcaatataaatccggagatggtcgggatgagcttc 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5525 accttctgctatacacggcctcatgtcaatataaatccggagatggtcgggatgagcttc 5466 Query: 419 ctgggcacgcctcagcgcagccttcgcttcctt 451 ||||||||||||||||||||||||||||||||| Sbjct: 5465 ctgggcacgcctcagcgcagccttcgcttcctt 5433
>gb|AF523678.1| Hordeum vulgare CC-NBS-LRR resistance protein MLA13 gene, complete cds; alternatively spliced Length = 13525 Score = 470 bits (237), Expect = e-129 Identities = 264/273 (96%) Strand = Plus / Minus Query: 1 acatgcaaaacagagcagcaacgatggccctcaactaaagaaaagcaaagctatccttgt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7622 acatgcaaaacagagcagcaacgatggccctcaactaaagaaaagcaaagctatccttgt 7563 Query: 61 aaggatcaattcaccccaacacccttgcttattcattacaaaacaaaaccatgtttcttt 120 |||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||| Sbjct: 7562 aaggatcaattcaccccaacacccttacttattcattacaaaacaaaacaatgtctcttc 7503 Query: 121 ctgcaagctgagtgccatttaaaagaagctcatcacacaagttccagcaaagttcgaaac 180 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 7502 ttgcaagctgagtgccatttaaaagaagctcatcacacaagttccagcaaagtttgaaac 7443 Query: 181 atttgcatggtcagcgcccgcccgaactgtttgtgaaacaagcatctctgatgccaccag 240 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 7442 atttgcatggtcagcgcccgaccgaactgtttgtgaaacaagcatctctgatgccaccag 7383 Query: 241 ctgtaactccaacgccccgcgccgctgctacct 273 ||||||| |||||||||| |||||||||||||| Sbjct: 7382 ctgtaaccccaacgccccacgccgctgctacct 7350 Score = 135 bits (68), Expect = 1e-28 Identities = 84/88 (95%), Gaps = 1/88 (1%) Strand = Plus / Minus Query: 276 agagcacatctgatgcaatgtgagtcgctctggatcagaaattagttctcctcctcgccc 335 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || Sbjct: 6246 agagcacatctgatgcaatgtgagtcgctctggatcagaaatcagttctcctcctc-tcc 6188 Query: 336 tcacacaaatcgtcatcatgagcacctt 363 ||||||||||| |||||||||||||||| Sbjct: 6187 tcacacaaatcatcatcatgagcacctt 6160 Score = 65.9 bits (33), Expect = 1e-07 Identities = 78/93 (83%) Strand = Plus / Minus Query: 359 accttctgctatacacggcctcatgtcaatataaatccggagatggtcgggatgagcttc 418 ||||| ||||||| ||||||||| |||| ||||||| || ||||| |||||| || || Sbjct: 6051 accttttgctatatgcggcctcatctcaaaataaatcgggggatggctgggatgggcgtc 5992 Query: 419 ctgggcacgcctcagcgcagccttcgcttcctt 451 |||||||||||| |||||||| ||||||||| Sbjct: 5991 gagggcacgcctcaccgcagcctccgcttcctt 5959
>gb|AF538039.2| Triticum aestivum Mal-like protein mRNA, complete cds Length = 2855 Score = 389 bits (196), Expect = e-105 Identities = 365/418 (87%), Gaps = 5/418 (1%) Strand = Plus / Minus Query: 1 acatgcaaaacagagcagcaacgatggccctcaactaaagaaaagcaaagctatccttgt 60 ||||||||||||||||||| ||||||||||||||| ||| | |||||||||||||||| Sbjct: 2742 acatgcaaaacagagcagcggcgatggccctcaactgaagcactgcaaagctatccttgt 2683 Query: 61 aaggatcaattcaccccaacacccttgcttattcattacaaaacaaaaccatgtttcttt 120 | |||||||| | ||||||||||| ||||||||||||||||| || | || | ||||| Sbjct: 2682 gat-atcaattcgcaccaacacccttacttattcattacaaaaccaagcaatatctcttt 2624 Query: 121 ctgcaagctgagtgccatttaaaagaagctcatcacacaagttccagcaaagttcgaaac 180 |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct: 2623 ctgcaagctgagtgccatttaaaagaagctcatcacacaacttccagcaaagtttgaaac 2564 Query: 181 atttgcatggtcagcgcccgcccgaactgtttgtgaaacaagcatctctgatgccaccag 240 |||||| | |||||||| ||| || ||||||||||||| |||||||||||||||||| Sbjct: 2563 ctttgcacagccagcgcccacccaaaatgtttgtgaaacattcatctctgatgccaccag 2504 Query: 241 ctgtaactccaacgccccgcgccgctgctacctcgagagcacatctgatgcaatgtgagt 300 | ||||| ||| || ||||| || ||||||||| ||||||||||| |||||||||||||| Sbjct: 2503 cagtaaccccaccgtcccgcacccctgctacct-gagagcacatcagatgcaatgtgagt 2445 Query: 301 cgctctggatcagaaattagttctcctcctcgccctcacacaaatcgtcatcatgagcac 360 ||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||| Sbjct: 2444 cgctctggatcagaaatcagtt---ctcctcgtcctcacacaaatcgtcatcatgagcat 2388 Query: 361 cttctgctatacacggcctcatgtcaatataaatccggagatggtcgggatgagcttc 418 ||||||||||| ||| |||| |||||||||| ||| ||||| |||||| ||||| Sbjct: 2387 cttctgctatatccgggatcatcccaatataaatacggggatggctgggatgggcttc 2330
>emb|AJ302292.1|HVU302292 Hordeum vulgare mRNA for MLA6 protein Length = 2871 Score = 268 bits (135), Expect = 1e-68 Identities = 135/135 (100%) Strand = Plus / Minus Query: 317 ttagttctcctcctcgccctcacacaaatcgtcatcatgagcaccttctgctatacacgg 376 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2871 ttagttctcctcctcgccctcacacaaatcgtcatcatgagcaccttctgctatacacgg 2812 Query: 377 cctcatgtcaatataaatccggagatggtcgggatgagcttcctgggcacgcctcagcgc 436 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2811 cctcatgtcaatataaatccggagatggtcgggatgagcttcctgggcacgcctcagcgc 2752 Query: 437 agccttcgcttcctt 451 ||||||||||||||| Sbjct: 2751 agccttcgcttcctt 2737
>gb|AY009939.1| Hordeum vulgare Mla1 (Mla1) mRNA, complete cds Length = 3380 Score = 246 bits (124), Expect = 5e-62 Identities = 163/176 (92%) Strand = Plus / Minus Query: 276 agagcacatctgatgcaatgtgagtcgctctggatcagaaattagttctcctcctcgccc 335 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 3147 agagcacatctgatgcaatgtgagtcgctctggatcagaaatcagttctcctcctcgtcc 3088 Query: 336 tcacacaaatcgtcatcatgagcaccttctgctatacacggcctcatgtcaatataaatc 395 |||||||||||||||||||||||||||| ||||||| ||||||||| | |||||||||| Sbjct: 3087 tcacacaaatcgtcatcatgagcaccttttgctatatgcggcctcatctgaatataaatc 3028 Query: 396 cggagatggtcgggatgagcttcctgggcacgcctcagcgcagccttcgcttcctt 451 ||| ||||| ||||||||||||| |||||||||||| |||||||| ||||||||| Sbjct: 3027 cggggatggctgggatgagcttccagggcacgcctcaccgcagcctccgcttcctt 2972
>gb|AY196347.1| Hordeum vulgare subsp. vulgare MLA12 (Mla12) gene, complete cds Length = 6604 Score = 172 bits (87), Expect = 6e-40 Identities = 157/179 (87%), Gaps = 1/179 (0%) Strand = Plus / Minus Query: 1 acatgcaaaacagagcagcaacgatggccctcaactaaagaaaagcaaagctatccttgt 60 |||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||| Sbjct: 6253 acatgcaaaacagagcagcaacgatggccctcaactgaagaaaagcaaagatatacttgt 6194 Query: 61 aaggatcaattcaccccaacacccttgcttattcattacaaaacaaaaccatgtttcttt 120 |||||||||||| |||||||| || ||||||||||||| ||| || | | | ||||| Sbjct: 6193 aaggatcaattcgatccaacaccgttacttattcattacagaaccaagcagtatctcttt 6134 Query: 121 ctgcaagctgagtgccatttaaaagaagctcatcacacaagttccagcaaagttcgaaa 179 | |||||| || |||||||||||||||||||||||| ||| || ||| ||||||||||| Sbjct: 6133 cggcaagc-gactgccatttaaaagaagctcatcacccaactttcagaaaagttcgaaa 6076 Score = 91.7 bits (46), Expect = 2e-15 Identities = 70/78 (89%) Strand = Plus / Minus Query: 374 cggcctcatgtcaatataaatccggagatggtcgggatgagcttcctgggcacgcctcag 433 |||||||||||||||||||||||| |||| ||||||||||||| |||||||||||| Sbjct: 4650 cggcctcatgtcaatataaatccgaggatgtctgggatgagcttccagggcacgcctcac 4591 Query: 434 cgcagccttcgcttcctt 451 |||||||| ||||||||| Sbjct: 4590 cgcagcctccgcttcctt 4573 Score = 58.0 bits (29), Expect = 3e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 335 ctcacacaaatcgtcatcatgagcacctt 363 ||||||||||||||||||||||||||||| Sbjct: 4806 ctcacacaaatcgtcatcatgagcacctt 4778 Score = 40.1 bits (20), Expect = 6.1 Identities = 35/40 (87%) Strand = Plus / Minus Query: 208 tgtttgtgaaacaagcatctctgatgccaccagctgtaac 247 ||||||||||||| |||| || |||||| ||||| ||||| Sbjct: 6030 tgtttgtgaaacatgcatgtccgatgcctccagcagtaac 5991
>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence Length = 261265 Score = 159 bits (80), Expect = 1e-35 Identities = 86/88 (97%) Strand = Plus / Plus Query: 276 agagcacatctgatgcaatgtgagtcgctctggatcagaaattagttctcctcctcgccc 335 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 184857 agagcacatctgatgcaatgtgagtcgctctggatcagaaatcagttctcctcctcgtcc 184916 Query: 336 tcacacaaatcgtcatcatgagcacctt 363 |||||||||||||||||||||||||||| Sbjct: 184917 tcacacaaatcgtcatcatgagcacctt 184944 Score = 97.6 bits (49), Expect = 3e-17 Identities = 82/93 (88%) Strand = Plus / Plus Query: 359 accttctgctatacacggcctcatgtcaatataaatccggagatggtcgggatgagcttc 418 ||||| ||||||| ||||||||| | ||||||||||||| ||||| |||||||||||| Sbjct: 185053 accttttgctatatgcggcctcatctgaatataaatccggggatggctgggatgagcttc 185112 Query: 419 ctgggcacgcctcagcgcagccttcgcttcctt 451 | |||||||||||| |||||||| ||||||||| Sbjct: 185113 cagggcacgcctcaccgcagcctccgcttcctt 185145 Score = 71.9 bits (36), Expect = 2e-09 Identities = 108/131 (82%), Gaps = 7/131 (5%) Strand = Plus / Plus Query: 42 aaagcaaagctatccttgtaaggatcaattcaccccaacacccttgcttattcattacaa 101 ||||||||||| | |||||||||||||||| || |||||| ||||||||||||| Sbjct: 178005 aaagcaaagctgtacttgtaaggatcaatttac------acccttacttattcattacag 178058 Query: 102 aacaaaaccatgtttctttctgcaagctgagtgccatttaaaagaagctcatcacacaag 161 ||| || | | | |||||| |||||| || |||||||||||||||||||||||| ||| Sbjct: 178059 aaccaagcagtatctctttcagcaagc-gactgccatttaaaagaagctcatcactcaat 178117 Query: 162 ttccagcaaag 172 || |||||||| Sbjct: 178118 tttcagcaaag 178128 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Minus Query: 321 ttctcctcctcgccctcacacaaatcgtcatcatgagca 359 |||| ||||||| ||||||||||||||||||||||||| Sbjct: 212209 ttcttctcctcgtgctcacacaaatcgtcatcatgagca 212171 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 1 acatgcaaaacagagcagcaac 22 |||||||||||||||||||||| Sbjct: 177979 acatgcaaaacagagcagcaac 178000
>gb|AY009938.2| Hordeum vulgare subsp. vulgare MLA1-2 (Mla1-2) gene, partial cds; and MLA1 (Mla1) gene, complete cds Length = 18958 Score = 159 bits (80), Expect = 1e-35 Identities = 86/88 (97%) Strand = Plus / Minus Query: 276 agagcacatctgatgcaatgtgagtcgctctggatcagaaattagttctcctcctcgccc 335 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct: 14249 agagcacatctgatgcaatgtgagtcgctctggatcagaaatcagttctcctcctcgtcc 14190 Query: 336 tcacacaaatcgtcatcatgagcacctt 363 |||||||||||||||||||||||||||| Sbjct: 14189 tcacacaaatcgtcatcatgagcacctt 14162 Score = 97.6 bits (49), Expect = 3e-17 Identities = 82/93 (88%) Strand = Plus / Minus Query: 359 accttctgctatacacggcctcatgtcaatataaatccggagatggtcgggatgagcttc 418 ||||| ||||||| ||||||||| | ||||||||||||| ||||| |||||||||||| Sbjct: 14053 accttttgctatatgcggcctcatctgaatataaatccggggatggctgggatgagcttc 13994 Query: 419 ctgggcacgcctcagcgcagccttcgcttcctt 451 | |||||||||||| |||||||| ||||||||| Sbjct: 13993 cagggcacgcctcaccgcagcctccgcttcctt 13961
>emb|AJ302296.1|HVU302296 Hordeum vulgare genomic sequence, clone BAC 80H14, isolate Mla-RGH1bcd Length = 2833 Score = 97.6 bits (49), Expect = 3e-17 Identities = 82/93 (88%) Strand = Plus / Minus Query: 359 accttctgctatacacggcctcatgtcaatataaatccggagatggtcgggatgagcttc 418 ||||| ||||||| ||||||||| | ||||||||||||| ||||| |||||||||||| Sbjct: 2812 accttttgctatatgcggcctcatctgaatataaatccggggatggctgggatgagcttc 2753 Query: 419 ctgggcacgcctcagcgcagccttcgcttcctt 451 | |||||||||||| |||||||| ||||||||| Sbjct: 2752 cagggcacgcctcaccgcagcctccgcttcctt 2720
>gb|AY266443.1| Hordeum vulgare MLA13-2 (Mla13-2) gene and LINE element Lauren, partial sequence; Copia/Ty1-like retrotransposon HORPIA-4 and Copia/Ty1-like retrotransposon HORPIA-5, complete sequence Length = 18901 Score = 87.7 bits (44), Expect = 3e-14 Identities = 68/76 (89%) Strand = Plus / Minus Query: 376 gcctcatgtcaatataaatccggagatggtcgggatgagcttcctgggcacgcctcagcg 435 ||||||||||||||||||| ||| ||||| ||||||||||||| |||||| ||||| || Sbjct: 17251 gcctcatgtcaatataaatacggggatggctgggatgagcttccagggcacacctcaccg 17192 Query: 436 cagccttcgcttcctt 451 |||||| ||||||||| Sbjct: 17191 cagcctccgcttcctt 17176 Score = 73.8 bits (37), Expect = 4e-10 Identities = 114/138 (82%), Gaps = 5/138 (3%) Strand = Plus / Minus Query: 42 aaagcaaagctatccttgtaaggatcaattcaccccaacacccttgcttattcattacaa 101 ||||||||||| | ||||||||||||||||| ||| ||||||| |||||||||| Sbjct: 18631 aaagcaaagctgtacttgtaaggatcaattcgttccagcaccctt----attcattacag 18576 Query: 102 aacaaaaccatgtttctttctgcaagctgagtgccatttaaaagaagctcatcacacaag 161 ||| || | | | |||||| |||||| || |||||||||||||||||||||||| ||| Sbjct: 18575 aaccaagcagtatctctttcagcaagc-gactgccatttaaaagaagctcatcactcaac 18517 Query: 162 ttccagcaaagttcgaaa 179 || |||||||| |||||| Sbjct: 18516 tttcagcaaaggtcgaaa 18499 Score = 58.0 bits (29), Expect = 3e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 335 ctcacacaaatcgtcatcatgagcacctt 363 ||||||||||||||||||||||||||||| Sbjct: 17409 ctcacacaaatcgtcatcatgagcacctt 17381
>gb|AY266442.1| Hordeum vulgare LINE element Lauren, partial sequence; MLA6-2 (Mla6-2) gene, complete cds, alternatively spliced; Copia/Ty1-like retrotransposon HORPIA-4 and Copia/Ty1-like retrotransposon HORPIA-5, complete sequence Length = 17053 Score = 87.7 bits (44), Expect = 3e-14 Identities = 68/76 (89%) Strand = Plus / Minus Query: 376 gcctcatgtcaatataaatccggagatggtcgggatgagcttcctgggcacgcctcagcg 435 ||||||||||||||||||| ||| ||||| ||||||||||||| |||||| ||||| || Sbjct: 15987 gcctcatgtcaatataaatacggggatggctgggatgagcttccagggcacacctcaccg 15928 Query: 436 cagccttcgcttcctt 451 |||||| ||||||||| Sbjct: 15927 cagcctccgcttcctt 15912 Score = 58.0 bits (29), Expect = 3e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 335 ctcacacaaatcgtcatcatgagcacctt 363 ||||||||||||||||||||||||||||| Sbjct: 16145 ctcacacaaatcgtcatcatgagcacctt 16117
>gb|AY266445.1| Hordeum vulgare MLA10 (Mla10) mRNA, complete cds Length = 3611 Score = 52.0 bits (26), Expect = 0.002 Identities = 89/110 (80%) Strand = Plus / Minus Query: 342 aaatcgtcatcatgagcaccttctgctatacacggcctcatgtcaatataaatccggaga 401 ||||||||||| |||||||||||||||||| ||| |||| ||| |||| || || Sbjct: 3262 aaatcgtcatcttgagcaccttctgctataggcgggtgcatgaaaattgcaatctgggga 3203 Query: 402 tggtcgggatgagcttcctgggcacgcctcagcgcagccttcgcttcctt 451 |||| |||||| || || |||||||||||| ||||||| ||||||||| Sbjct: 3202 tggttgggatgggcgtcgagggcacgcctcacagcagcctccgcttcctt 3153
>emb|AL671926.11| Mouse DNA sequence from clone RP23-356J7 on chromosome X, complete sequence Length = 153310 Score = 46.1 bits (23), Expect = 0.098 Identities = 23/23 (100%) Strand = Plus / Plus Query: 89 ttattcattacaaaacaaaacca 111 ||||||||||||||||||||||| Sbjct: 48957 ttattcattacaaaacaaaacca 48979
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 422 ggcacgcctcagcgcagccttc 443 |||||||||||||||||||||| Sbjct: 10776556 ggcacgcctcagcgcagccttc 10776577
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 312 agaaattagttctcctcctcgccctc 337 ||||||| |||||||||||||||||| Sbjct: 626591 agaaattcgttctcctcctcgccctc 626566
>dbj|AP004001.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1115_D03 Length = 169378 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 422 ggcacgcctcagcgcagccttc 443 |||||||||||||||||||||| Sbjct: 116037 ggcacgcctcagcgcagccttc 116058
>gb|AC069239.16| Homo sapiens 3 BAC RP11-173L2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 90020 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 98 acaaaacaaaaccatgtttct 118 ||||||||||||||||||||| Sbjct: 38163 acaaaacaaaaccatgtttct 38183
>emb|CR382124.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome D of strain NRRL Y-1140 of Kluyveromyces lactis Length = 1715506 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 94 cattacaaaacaaaaccatgtttct 118 ||||||||||||||| ||||||||| Sbjct: 1632539 cattacaaaacaaaaacatgtttct 1632563
>gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0615D12, complete sequence Length = 155402 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 catgcaaaacagagcagcaa 21 |||||||||||||||||||| Sbjct: 43510 catgcaaaacagagcagcaa 43529
>gb|AC125275.8| Mus musculus chromosome 7, clone RP24-165E9, complete sequence Length = 218429 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 ttcattacaaaacaaaacca 111 |||||||||||||||||||| Sbjct: 160867 ttcattacaaaacaaaacca 160886
>gb|AC116515.11| Mus musculus chromosome 7, clone RP24-331B9, complete sequence Length = 133179 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 ttcattacaaaacaaaacca 111 |||||||||||||||||||| Sbjct: 1582 ttcattacaaaacaaaacca 1601
>emb|AL157931.17| Human DNA sequence from clone RP11-124N19 on chromosome 13, complete sequence Length = 147181 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 96 ttacaaaacaaaaccatgtttctt 119 |||||||||||||||||| ||||| Sbjct: 85813 ttacaaaacaaaaccatgattctt 85836
>gb|AC119801.14| Mus musculus, clone RP23-54N13, complete sequence Length = 251756 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 gatggccctcaactaaagaa 42 |||||||||||||||||||| Sbjct: 105697 gatggccctcaactaaagaa 105678
>emb|AL928631.4| Mouse DNA sequence from clone RP23-240K15 on chromosome 4, complete sequence Length = 178426 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 cttattcattacaaaacaaa 107 |||||||||||||||||||| Sbjct: 147847 cttattcattacaaaacaaa 147828
>emb|AL590870.14| Mouse DNA sequence from clone RP23-201H16 on chromosome 13 Contains a PX19 or SBBI12 or PRELI pseudogene, complete sequence Length = 214308 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 aactaaagaaaagcaaagct 52 |||||||||||||||||||| Sbjct: 119946 aactaaagaaaagcaaagct 119927
>gb|AC105218.4| Homo sapiens chromosome 8, clone RP11-410F13, complete sequence Length = 138416 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 tattcattacaaaacaaaac 109 |||||||||||||||||||| Sbjct: 29014 tattcattacaaaacaaaac 29033
>gb|AC021500.6| Homo sapiens chromosome 8, clone RP11-135K1, complete sequence Length = 160348 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 90 tattcattacaaaacaaaac 109 |||||||||||||||||||| Sbjct: 38067 tattcattacaaaacaaaac 38048
>emb|AL512362.4|CNS07EFB Human chromosome 14 DNA sequence BAC R-716K17 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 168744 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 96 ttacaaaacaaaaccatgtttctt 119 |||||||||||||||||| ||||| Sbjct: 98876 ttacaaaacaaaaccatgattctt 98853
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 catgcaaaacagagcagcaa 21 |||||||||||||||||||| Sbjct: 21652334 catgcaaaacagagcagcaa 21652353
>gb|AC017101.10| Homo sapiens BAC clone RP11-556A11 from 2, complete sequence Length = 195635 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 88 cttattcattacaaaacaaa 107 |||||||||||||||||||| Sbjct: 40076 cttattcattacaaaacaaa 40057
>gb|AC154632.2| Mus musculus BAC clone RP23-292P17 from chromosome 16, complete sequence Length = 165860 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 aaaaccatgtttctttctgc 124 |||||||||||||||||||| Sbjct: 9699 aaaaccatgtttctttctgc 9680
>gb|AC117378.8| Homo sapiens 12 BAC RP11-112B10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 110459 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 ctaaagaaaagcaaagctat 54 |||||||||||||||||||| Sbjct: 5314 ctaaagaaaagcaaagctat 5333
>emb|BX927359.1| Human chromosome 14 DNA sequence BAC R-614O9 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 173641 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 96 ttacaaaacaaaaccatgtttctt 119 |||||||||||||||||| ||||| Sbjct: 81434 ttacaaaacaaaaccatgattctt 81457
>emb|AL355834.4|CNS05TCN Human chromosome 14 DNA sequence BAC R-932A10 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 222275 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 acaaaacaaaaccatgtttc 117 |||||||||||||||||||| Sbjct: 117935 acaaaacaaaaccatgtttc 117916
>gb|CY007469.1| Influenza A virus (A/Canterbury/106/2004(H1N1)) segment 6, complete sequence Length = 1436 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 168 caaagttcgaaacatttgcatggtcagc 195 ||||||||||| || ||||||||||||| Sbjct: 524 caaagttcgaatcagttgcatggtcagc 551
>emb|CT009682.6| Mouse DNA sequence from clone RP23-136H15 on chromosome 16, complete sequence Length = 227456 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 aaaaccatgtttctttctgc 124 |||||||||||||||||||| Sbjct: 190338 aaaaccatgtttctttctgc 190319 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,138,459 Number of Sequences: 3902068 Number of extensions: 5138459 Number of successful extensions: 99949 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 99757 Number of HSP's gapped (non-prelim): 174 length of query: 451 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 429 effective length of database: 17,147,199,772 effective search space: 7356148702188 effective search space used: 7356148702188 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
