| Clone Name | rbah60f06 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK111778.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023081L07, full insert sequence Length = 1572 Score = 137 bits (69), Expect = 6e-29 Identities = 175/209 (83%), Gaps = 1/209 (0%) Strand = Plus / Minus Query: 473 caggcgccaagcaacggtcgagcactttctcgcacacagcagatagactttcctcggtgt 532 |||| ||||||||| |||| |||| |||||||| ||||||||||| || ||||| |||| Sbjct: 1179 caggtgccaagcaatggtcaagcaacttctcgcagacagcagataggctatcctcagtgt 1120 Query: 533 tcagcttctcatgcacaaaatccactacttgttgacttgacatgcagtcccatataccat 592 ||| | | || ||||| ||||| |||| ||||||||||||||| |||||||| |||| Sbjct: 1119 tcatttctttgtgaacaaagtccaccacttcttgacttgacatgcaatcccatatgccat 1060 Query: 593 cacaggccaaaacaatgaattcgtcatcctcagaaagtgtaactgtgttcactttcaggt 652 |||| || ||||| ||||| || ||||||||||||||| |||||||||| | ||||||| Sbjct: 1059 cacatgctaaaacgatgaactcatcatcctcagaaagtttaactgtgttta-attcaggt 1001 Query: 653 tcagctgagacagtctgtttctcggctgg 681 ||||| | |||| ||||| |||||||||| Sbjct: 1000 tcagcagtgacaatctgtctctcggctgg 972 Score = 50.1 bits (25), Expect = 0.010 Identities = 50/57 (87%), Gaps = 1/57 (1%) Strand = Plus / Minus Query: 29 aagaacaaatcctatagagattgttgaatagaatccc-tctgttatatacaccactt 84 ||||||||| ||||||| || ||| |||||||||||| | | ||||||||||||||| Sbjct: 1474 aagaacaaaccctatagtgactgtagaatagaatcccttttcttatatacaccactt 1418
>gb|AF213455.1|AF213455 Zea mays protein phosphatase type-2C (pp2c-1) mRNA, complete cds Length = 1107 Score = 67.9 bits (34), Expect = 4e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 568 cttgacatgcagtcccatataccatcacaggccaaaacaatgaattcgtc 617 ||||||||||||||||| || |||||||| || ||||||||||||||||| Sbjct: 839 cttgacatgcagtcccaaatgccatcacatgctaaaacaatgaattcgtc 790 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 430 accaagatcatcgtcatgtt 449 |||||||||||||||||||| Sbjct: 980 accaagatcatcgtcatgtt 961
>gb|AY106158.1| Zea mays PCO109280 mRNA sequence Length = 813 Score = 67.9 bits (34), Expect = 4e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 568 cttgacatgcagtcccatataccatcacaggccaaaacaatgaattcgtc 617 ||||||||||||||||| || |||||||| || ||||||||||||||||| Sbjct: 230 cttgacatgcagtcccaaatgccatcacatgctaaaacaatgaattcgtc 181
>gb|AY104016.1| Zea mays PCO109282 mRNA sequence Length = 1486 Score = 67.9 bits (34), Expect = 4e-08 Identities = 46/50 (92%) Strand = Plus / Minus Query: 568 cttgacatgcagtcccatataccatcacaggccaaaacaatgaattcgtc 617 ||||||||||||||||| || ||||| || |||||||||||||||||||| Sbjct: 996 cttgacatgcagtcccagatgccatcgcatgccaaaacaatgaattcgtc 947
>gb|AC137592.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0035B22, complete sequence Length = 155788 Score = 52.0 bits (26), Expect = 0.003 Identities = 47/54 (87%) Strand = Plus / Plus Query: 582 ccatataccatcacaggccaaaacaatgaattcgtcatcctcagaaagtgtaac 635 |||||| |||||||| || ||||| ||||| || ||||||||||||||| |||| Sbjct: 78981 ccatatgccatcacatgctaaaacgatgaactcatcatcctcagaaagtttaac 79034 Score = 50.1 bits (25), Expect = 0.010 Identities = 50/57 (87%), Gaps = 1/57 (1%) Strand = Plus / Plus Query: 29 aagaacaaatcctatagagattgttgaatagaatccc-tctgttatatacaccactt 84 ||||||||| ||||||| || ||| |||||||||||| | | ||||||||||||||| Sbjct: 77875 aagaacaaaccctatagtgactgtagaatagaatcccttttcttatatacaccactt 77931 Score = 46.1 bits (23), Expect = 0.16 Identities = 47/55 (85%) Strand = Plus / Plus Query: 473 caggcgccaagcaacggtcgagcactttctcgcacacagcagatagactttcctc 527 |||| ||||||||| |||| |||| |||||||| ||||||||||| || ||||| Sbjct: 78253 caggtgccaagcaatggtcaagcaacttctcgcagacagcagataggctatcctc 78307 Score = 42.1 bits (21), Expect = 2.4 Identities = 33/37 (89%) Strand = Plus / Plus Query: 547 acaaaatccactacttgttgacttgacatgcagtccc 583 ||||| ||||| |||| ||||||||||||||| |||| Sbjct: 78445 acaaagtccaccacttcttgacttgacatgcaatccc 78481 Score = 40.1 bits (20), Expect = 9.6 Identities = 32/36 (88%) Strand = Plus / Plus Query: 646 ttcaggttcagctgagacagtctgtttctcggctgg 681 |||||||||||| | |||| ||||| |||||||||| Sbjct: 79126 ttcaggttcagcagtgacaatctgtctctcggctgg 79161
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 52.0 bits (26), Expect = 0.003 Identities = 47/54 (87%) Strand = Plus / Plus Query: 582 ccatataccatcacaggccaaaacaatgaattcgtcatcctcagaaagtgtaac 635 |||||| |||||||| || ||||| ||||| || ||||||||||||||| |||| Sbjct: 21873547 ccatatgccatcacatgctaaaacgatgaactcatcatcctcagaaagtttaac 21873600 Score = 50.1 bits (25), Expect = 0.010 Identities = 50/57 (87%), Gaps = 1/57 (1%) Strand = Plus / Plus Query: 29 aagaacaaatcctatagagattgttgaatagaatccc-tctgttatatacaccactt 84 ||||||||| ||||||| || ||| |||||||||||| | | ||||||||||||||| Sbjct: 21872441 aagaacaaaccctatagtgactgtagaatagaatcccttttcttatatacaccactt 21872497 Score = 46.1 bits (23), Expect = 0.16 Identities = 47/55 (85%) Strand = Plus / Plus Query: 473 caggcgccaagcaacggtcgagcactttctcgcacacagcagatagactttcctc 527 |||| ||||||||| |||| |||| |||||||| ||||||||||| || ||||| Sbjct: 21872819 caggtgccaagcaatggtcaagcaacttctcgcagacagcagataggctatcctc 21872873 Score = 42.1 bits (21), Expect = 2.4 Identities = 33/37 (89%) Strand = Plus / Plus Query: 547 acaaaatccactacttgttgacttgacatgcagtccc 583 ||||| ||||| |||| ||||||||||||||| |||| Sbjct: 21873011 acaaagtccaccacttcttgacttgacatgcaatccc 21873047 Score = 40.1 bits (20), Expect = 9.6 Identities = 32/36 (88%) Strand = Plus / Plus Query: 646 ttcaggttcagctgagacagtctgtttctcggctgg 681 |||||||||||| | |||| ||||| |||||||||| Sbjct: 21873692 ttcaggttcagcagtgacaatctgtctctcggctgg 21873727
>dbj|AP005090.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1065_E04 Length = 115865 Score = 52.0 bits (26), Expect = 0.003 Identities = 47/54 (87%) Strand = Plus / Plus Query: 582 ccatataccatcacaggccaaaacaatgaattcgtcatcctcagaaagtgtaac 635 |||||| |||||||| || ||||| ||||| || ||||||||||||||| |||| Sbjct: 4264 ccatatgccatcacatgctaaaacgatgaactcatcatcctcagaaagtttaac 4317 Score = 50.1 bits (25), Expect = 0.010 Identities = 50/57 (87%), Gaps = 1/57 (1%) Strand = Plus / Plus Query: 29 aagaacaaatcctatagagattgttgaatagaatccc-tctgttatatacaccactt 84 ||||||||| ||||||| || ||| |||||||||||| | | ||||||||||||||| Sbjct: 3158 aagaacaaaccctatagtgactgtagaatagaatcccttttcttatatacaccactt 3214 Score = 46.1 bits (23), Expect = 0.16 Identities = 47/55 (85%) Strand = Plus / Plus Query: 473 caggcgccaagcaacggtcgagcactttctcgcacacagcagatagactttcctc 527 |||| ||||||||| |||| |||| |||||||| ||||||||||| || ||||| Sbjct: 3536 caggtgccaagcaatggtcaagcaacttctcgcagacagcagataggctatcctc 3590 Score = 42.1 bits (21), Expect = 2.4 Identities = 33/37 (89%) Strand = Plus / Plus Query: 547 acaaaatccactacttgttgacttgacatgcagtccc 583 ||||| ||||| |||| ||||||||||||||| |||| Sbjct: 3728 acaaagtccaccacttcttgacttgacatgcaatccc 3764 Score = 40.1 bits (20), Expect = 9.6 Identities = 32/36 (88%) Strand = Plus / Plus Query: 646 ttcaggttcagctgagacagtctgtttctcggctgg 681 |||||||||||| | |||| ||||| |||||||||| Sbjct: 4409 ttcaggttcagcagtgacaatctgtctctcggctgg 4444
>dbj|AK108807.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-151-D03, full insert sequence Length = 1465 Score = 50.1 bits (25), Expect = 0.010 Identities = 50/57 (87%), Gaps = 1/57 (1%) Strand = Plus / Plus Query: 29 aagaacaaatcctatagagattgttgaatagaatccc-tctgttatatacaccactt 84 ||||||||| ||||||| || ||| |||||||||||| | | ||||||||||||||| Sbjct: 897 aagaacaaaccctatagtgactgtagaatagaatcccttttcttatatacaccactt 953 Score = 46.1 bits (23), Expect = 0.16 Identities = 47/55 (85%) Strand = Plus / Plus Query: 473 caggcgccaagcaacggtcgagcactttctcgcacacagcagatagactttcctc 527 |||| ||||||||| |||| |||| |||||||| ||||||||||| || ||||| Sbjct: 1275 caggtgccaagcaatggtcaagcaacttctcgcagacagcagataggctatcctc 1329
>gb|AY104507.1| Zea mays PCO148355 mRNA sequence Length = 1212 Score = 50.1 bits (25), Expect = 0.010 Identities = 34/37 (91%) Strand = Plus / Minus Query: 547 acaaaatccactacttgttgacttgacatgcagtccc 583 |||||||| ||||||| ||||||||||||||| |||| Sbjct: 728 acaaaatcaactacttcttgacttgacatgcaatccc 692 Score = 42.1 bits (21), Expect = 2.4 Identities = 47/53 (88%), Gaps = 2/53 (3%) Strand = Plus / Minus Query: 32 aacaaatcctata-gagattgttgaatagaatccc-tctgttatatacaccac 82 |||||| |||||| |||||||| |||||||||||| | | ||||||||||||| Sbjct: 1080 aacaaaccctataagagattgtcgaatagaatcccttttcttatatacaccac 1028 Score = 40.1 bits (20), Expect = 9.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 589 ccatcacaggccaaaacaatgaattcgtcatc 620 |||||||| || |||||||||||||| ||||| Sbjct: 612 ccatcacaagctaaaacaatgaattcatcatc 581
>dbj|AK120521.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013124L22, full insert sequence Length = 2052 Score = 44.1 bits (22), Expect = 0.62 Identities = 40/46 (86%) Strand = Plus / Minus Query: 562 tgttgacttgacatgcagtcccatataccatcacaggccaaaacaa 607 ||||| ||||||||||||||||| || || ||||| || ||||||| Sbjct: 1183 tgttggcttgacatgcagtcccaaatgccgtcacatgctaaaacaa 1138
>dbj|AK112023.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-H05, full insert sequence Length = 1693 Score = 44.1 bits (22), Expect = 0.62 Identities = 40/46 (86%) Strand = Plus / Minus Query: 562 tgttgacttgacatgcagtcccatataccatcacaggccaaaacaa 607 ||||| || |||||||||||||| || |||||||| || ||||||| Sbjct: 1134 tgttggctagacatgcagtcccagatgccatcacatgctaaaacaa 1089
>ref|NM_103700.3| Arabidopsis thaliana catalytic/ protein phosphatase type 2C/ protein serine/threonine phosphatase AT1G48040 mRNA, complete cds Length = 1619 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 580 tcccatataccatcacaggccaaaa 604 ||||||||||||||||| ||||||| Sbjct: 1045 tcccatataccatcacatgccaaaa 1021
>gb|BT015400.1| Arabidopsis thaliana At1g48040 gene, complete cds Length = 1134 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 580 tcccatataccatcacaggccaaaa 604 ||||||||||||||||| ||||||| Sbjct: 884 tcccatataccatcacatgccaaaa 860
>emb|AL353135.32| Human DNA sequence from clone RP11-63L7 on chromosome 6 Contains the PROL2 gene for proline rich 2 (proline-rich protein with nuclear targeting signal), the gene for NB4 apoptosis/differentiation related protein (PNAS-145), the gene for serine-arginine repressor protein (35kDa) (SRrp35), the gene for a novel protein similar to putative amidohydrolase, the 3' end of the GABRR1 gene for gamma-aminobutyric acid (GABA) receptor, rho 1 and 3 CpG islands, complete sequence Length = 127653 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 282 agattgctccaagctagaagt 302 ||||||||||||||||||||| Sbjct: 49006 agattgctccaagctagaagt 49026
>ref|XM_680338.1| PREDICTED: Danio rerio similar to a disintegrin and metalloproteinase domain 23 preproprotein (LOC557302), partial mRNA Length = 2454 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 524 cctcggtgttcagcttctcat 544 ||||||||||||||||||||| Sbjct: 160 cctcggtgttcagcttctcat 140
>gb|AC051631.9|AC051631 Arabidopsis thaliana chromosome 1 BAC T2J15 genomic sequence, complete sequence Length = 96221 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 580 tcccatataccatcacaggccaaaa 604 ||||||||||||||||| ||||||| Sbjct: 43520 tcccatataccatcacatgccaaaa 43496
>gb|AC004816.1|AC004816 Homo sapiens PAC clone RP6-65G23 from 14q24.3, complete sequence Length = 166200 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 297 agaagtagcagctgacttggtgggc 321 |||||||||||||||| |||||||| Sbjct: 23219 agaagtagcagctgacctggtgggc 23195
>gb|AC023673.3|AC023673 Genomic sequence for Arabidopsis thaliana BAC F21D18 from chromosome I, complete sequence Length = 109367 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 580 tcccatataccatcacaggccaaaa 604 ||||||||||||||||| ||||||| Sbjct: 101146 tcccatataccatcacatgccaaaa 101122
>dbj|AK176676.1| Arabidopsis thaliana mRNA for putative protein phosphatase-2C, complete cds, clone: RAFL25-21-H23 Length = 1629 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 580 tcccatataccatcacaggccaaaa 604 ||||||||||||||||| ||||||| Sbjct: 1045 tcccatataccatcacatgccaaaa 1021
>dbj|AK176010.1| Arabidopsis thaliana mRNA for putative protein phosphatase-2C, partial cds, clone: RAFL22-71-A02 Length = 1287 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 580 tcccatataccatcacaggccaaaa 604 ||||||||||||||||| ||||||| Sbjct: 703 tcccatataccatcacatgccaaaa 679
>gb|AC026762.17| Homo sapiens 3 BAC RP11-373C21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 54780 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 42 atagagattgttgaatagaatccct 66 |||||||||| |||||||||||||| Sbjct: 25570 atagagattgctgaatagaatccct 25594
>emb|BX004789.7| Mouse DNA sequence from clone RP24-132K7 on chromosome 4, complete sequence Length = 79922 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 550 aaatccactacttgttgacttgacatgca 578 ||||||||| |||||| |||||||||||| Sbjct: 66224 aaatccactccttgttaacttgacatgca 66252
>gb|CP000024.1| Streptococcus thermophilus CNRZ1066, complete genome Length = 1796226 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 20 aaaggctacaagaacaaatcctat 43 ||||||||| |||||||||||||| Sbjct: 409630 aaaggctactagaacaaatcctat 409607
>ref|NM_016945.2| Homo sapiens taste receptor, type 2, member 16 (TAS2R16), mRNA Length = 996 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 tcacccatcacatctttctc 133 |||||||||||||||||||| Sbjct: 395 tcacccatcacatctttctc 414
>gb|AY736042.1| Pan troglodytes candidate bitter taste receptor TAS2R16 gene, partial cds Length = 807 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 tcacccatcacatctttctc 133 |||||||||||||||||||| Sbjct: 290 tcacccatcacatctttctc 309
>gb|AY677142.1| Pan paniscus taste receptor T2R16 (TAS2R) gene, complete cds Length = 876 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 tcacccatcacatctttctc 133 |||||||||||||||||||| Sbjct: 329 tcacccatcacatctttctc 348
>gb|AC165141.4| Mus musculus BAC clone RP24-535G5 from chromosome 17, complete sequence Length = 187883 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 agtcattggagcatcaggct 250 |||||||||||||||||||| Sbjct: 116188 agtcattggagcatcaggct 116169
>gb|AC007587.12| Drosophila melanogaster clone BACR02D22, complete sequence Length = 185915 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 582 ccatataccatcacaggcca 601 |||||||||||||||||||| Sbjct: 37082 ccatataccatcacaggcca 37063
>gb|AC009353.9| Drosophila melanogaster clone BACR32F22, complete sequence Length = 157370 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 582 ccatataccatcacaggcca 601 |||||||||||||||||||| Sbjct: 33064 ccatataccatcacaggcca 33083
>gb|AY463542.1| Sus scrofa SLA-8 mRNA, complete cds Length = 1068 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 468 actctcaggcgccaagcaac 487 |||||||||||||||||||| Sbjct: 998 actctcaggcgccaagcaac 1017
>gb|AY463539.1| Sus scrofa clone 64 SLA-8 mRNA, partial cds Length = 526 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 468 actctcaggcgccaagcaac 487 |||||||||||||||||||| Sbjct: 247 actctcaggcgccaagcaac 266
>ref|XM_713211.1| Candida albicans SC5314 hypothetical protein (CaO19_10072), mRNA Length = 1773 Score = 40.1 bits (20), Expect = 9.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 580 tcccatataccatcacaggccaaaacaa 607 ||||| ||||||||||| |||||||||| Sbjct: 944 tcccaaataccatcacaagccaaaacaa 917
>ref|XM_713113.1| Candida albicans SC5314 hypothetical protein (CaO19_2538), mRNA Length = 1752 Score = 40.1 bits (20), Expect = 9.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 580 tcccatataccatcacaggccaaaacaa 607 ||||| ||||||||||| |||||||||| Sbjct: 944 tcccaaataccatcacaagccaaaacaa 917
>ref|NM_001009160.1| Pan troglodytes taste receptor T2R16 (T2R16), mRNA Length = 876 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 tcacccatcacatctttctc 133 |||||||||||||||||||| Sbjct: 329 tcacccatcacatctttctc 348
>ref|XM_645638.1| Entamoeba histolytica HM-1:IMSS protein phosphatase (202.t00013) partial mRNA Length = 1008 Score = 40.1 bits (20), Expect = 9.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 580 tcccatataccatcacaggccaaaacaa 607 ||||| ||||||||||| |||||||||| Sbjct: 791 tcccaaataccatcacatgccaaaacaa 764
>gb|AC004838.2| Homo sapiens PAC clone RP4-589D8 from 7, complete sequence Length = 142992 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 tcacccatcacatctttctc 133 |||||||||||||||||||| Sbjct: 11296 tcacccatcacatctttctc 11315
>emb|CR774195.4| Zebrafish DNA sequence from clone DKEY-73P2 in linkage group 3, complete sequence Length = 161050 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 atggagtcattggagcatca 246 |||||||||||||||||||| Sbjct: 115537 atggagtcattggagcatca 115518
>gb|CP000095.1| Prochlorococcus marinus str. NATL2A, complete genome Length = 1842899 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 520 ctttcctcggtgttcagctt 539 |||||||||||||||||||| Sbjct: 1674846 ctttcctcggtgttcagctt 1674865
>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome Length = 2799802 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 420 cttcagcacaaccaagatca 439 |||||||||||||||||||| Sbjct: 1059938 cttcagcacaaccaagatca 1059919
>gb|AF537210.1| Staphylococcus aureus hypothetical protein gene, partial cds; and hypothetical protein, acetyl transferase, and bifuntional autolysin precursor (atl) genes, complete cds Length = 5890 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 420 cttcagcacaaccaagatca 439 |||||||||||||||||||| Sbjct: 2429 cttcagcacaaccaagatca 2448
>gb|BC095524.1| Homo sapiens taste receptor, type 2, member 16, mRNA (cDNA clone MGC:111742 IMAGE:6971939), complete cds Length = 996 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 tcacccatcacatctttctc 133 |||||||||||||||||||| Sbjct: 395 tcacccatcacatctttctc 414
>gb|AC092923.8| Homo sapiens 3 BAC RP11-145K15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 150216 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 acaaaggctacaagaacaaa 37 |||||||||||||||||||| Sbjct: 114014 acaaaggctacaagaacaaa 114033
>gb|AC067807.10| Homo sapiens chromosome 11, clone RP11-738J16, complete sequence Length = 166312 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 184 cctgaccatccatggctggcctcc 207 ||||||||||||| |||||||||| Sbjct: 33523 cctgaccatccatagctggcctcc 33500
>ref|NM_165430.1| Drosophila melanogaster CG10417-RB, transcript variant B (CG10417), mRNA Length = 2362 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 582 ccatataccatcacaggcca 601 |||||||||||||||||||| Sbjct: 1638 ccatataccatcacaggcca 1619
>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome Length = 2878529 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 420 cttcagcacaaccaagatca 439 |||||||||||||||||||| Sbjct: 1105845 cttcagcacaaccaagatca 1105826
>ref|NM_136325.2| Drosophila melanogaster CG10417-RA, transcript variant A (CG10417), mRNA Length = 2542 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 582 ccatataccatcacaggcca 601 |||||||||||||||||||| Sbjct: 1818 ccatataccatcacaggcca 1799
>gb|AC084358.19| Homo sapiens 12p BAC RP11-418C2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 169949 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 683 aaaagcttattttctttcat 702 |||||||||||||||||||| Sbjct: 173 aaaagcttattttctttcat 154
>gb|AC084430.13| Homo sapiens 12p BAC RP11-96B19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 72022 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 683 aaaagcttattttctttcat 702 |||||||||||||||||||| Sbjct: 1827 aaaagcttattttctttcat 1846
>gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete genome Length = 2809422 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 420 cttcagcacaaccaagatca 439 |||||||||||||||||||| Sbjct: 1070868 cttcagcacaaccaagatca 1070849
>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome Length = 2821361 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 420 cttcagcacaaccaagatca 439 |||||||||||||||||||| Sbjct: 967268 cttcagcacaaccaagatca 967249
>gb|AY051748.1| Drosophila melanogaster LD27655 full length cDNA Length = 2510 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 582 ccatataccatcacaggcca 601 |||||||||||||||||||| Sbjct: 1773 ccatataccatcacaggcca 1754
>gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, complete genome Length = 2872769 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 420 cttcagcacaaccaagatca 439 |||||||||||||||||||| Sbjct: 1047394 cttcagcacaaccaagatca 1047375
>ref|XM_623415.1| PREDICTED: Apis mellifera similar to CG17746-PA, isoform A (LOC551020), mRNA Length = 963 Score = 40.1 bits (20), Expect = 9.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 580 tcccatataccatcacaggccaaaacaa 607 ||||| ||||||||||| |||||||||| Sbjct: 707 tcccaaataccatcacatgccaaaacaa 680
>dbj|AB199138.1| Hylobates agilis Hyag-T2R16 gene for bitter taste receptor T2R16, partial cds Length = 770 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 tcacccatcacatctttctc 133 |||||||||||||||||||| Sbjct: 275 tcacccatcacatctttctc 294
>dbj|AB199137.1| Pongo pygmaeus Popy-T2R16 gene for bitter taste receptor T2R16, partial cds Length = 770 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 tcacccatcacatctttctc 133 |||||||||||||||||||| Sbjct: 275 tcacccatcacatctttctc 294
>dbj|AB199136.1| Gorilla gorilla Gogo-T2R16 gene for bitter taste receptor T2R16, partial cds Length = 817 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 tcacccatcacatctttctc 133 |||||||||||||||||||| Sbjct: 302 tcacccatcacatctttctc 321
>dbj|AB199135.1| Pan troglodytes Patr-T2R16 gene for bitter taste receptor T2R16, partial cds Length = 817 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 tcacccatcacatctttctc 133 |||||||||||||||||||| Sbjct: 302 tcacccatcacatctttctc 321
>dbj|AB199134.1| Homo sapiens Hosa(Biaka)-T2R16 gene for bitter taste receptor T2R16, partial cds Length = 817 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 tcacccatcacatctttctc 133 |||||||||||||||||||| Sbjct: 302 tcacccatcacatctttctc 321
>dbj|AB199133.1| Homo sapiens Hosa(Japanese)-T2R16 gene for bitter taste receptor T2R16, partial cds Length = 817 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 tcacccatcacatctttctc 133 |||||||||||||||||||| Sbjct: 302 tcacccatcacatctttctc 321
>dbj|AB199132.1| Homo sapiens Hosa(Adygei)-T2R16 gene for bitter taste receptor T2R16, partial cds Length = 817 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 tcacccatcacatctttctc 133 |||||||||||||||||||| Sbjct: 302 tcacccatcacatctttctc 321
>gb|AC074114.6| Homo sapiens BAC clone RP11-278M24 from 2, complete sequence Length = 50843 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 238 ggagcatcaggctcgctggg 257 |||||||||||||||||||| Sbjct: 7297 ggagcatcaggctcgctggg 7316
>dbj|BA000028.3| Oceanobacillus iheyensis HTE831 DNA, complete genome Length = 3630528 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 685 aagcttattttctttcatct 704 |||||||||||||||||||| Sbjct: 1149497 aagcttattttctttcatct 1149516
>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2 Length = 2820462 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 420 cttcagcacaaccaagatca 439 |||||||||||||||||||| Sbjct: 1031215 cttcagcacaaccaagatca 1031196
>dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome Length = 2814816 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 420 cttcagcacaaccaagatca 439 |||||||||||||||||||| Sbjct: 1029517 cttcagcacaaccaagatca 1029498
>gb|AF227139.1|AF227139 Homo sapiens candidate taste receptor T2R16 gene, complete cds Length = 876 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 tcacccatcacatctttctc 133 |||||||||||||||||||| Sbjct: 329 tcacccatcacatctttctc 348
>gb|AY724993.1| Pongo pygmaeus chromosome 7 taste receptor T2R16 gene, complete cds Length = 876 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 tcacccatcacatctttctc 133 |||||||||||||||||||| Sbjct: 329 tcacccatcacatctttctc 348
>gb|AY724962.1| Homo sapiens chromosome 7 taste receptor T2R16 gene, complete cds Length = 876 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 tcacccatcacatctttctc 133 |||||||||||||||||||| Sbjct: 329 tcacccatcacatctttctc 348
>gb|AY724929.1| Gorilla gorilla chromosome 7 taste receptor T2R16 gene, complete cds Length = 876 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 tcacccatcacatctttctc 133 |||||||||||||||||||| Sbjct: 329 tcacccatcacatctttctc 348
>gb|AY724897.1| Pan troglodytes chromosome 7 taste receptor T2R16 gene, complete cds Length = 876 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 tcacccatcacatctttctc 133 |||||||||||||||||||| Sbjct: 329 tcacccatcacatctttctc 348
>gb|AY724890.1| Pan troglodytes chromosome 7 taste receptor T2R16 gene, complete cds Length = 876 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 tcacccatcacatctttctc 133 |||||||||||||||||||| Sbjct: 329 tcacccatcacatctttctc 348
>gb|AY724862.1| Pan paniscus chromosome 7 taste receptor T2R16 gene, complete cds Length = 876 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 tcacccatcacatctttctc 133 |||||||||||||||||||| Sbjct: 329 tcacccatcacatctttctc 348
>gb|AE003787.5| Drosophila melanogaster chromosome 2R, section 2 of 73 of the complete sequence Length = 294609 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 582 ccatataccatcacaggcca 601 |||||||||||||||||||| Sbjct: 283018 ccatataccatcacaggcca 283037
>emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA252, complete genome Length = 2902619 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 420 cttcagcacaaccaagatca 439 |||||||||||||||||||| Sbjct: 1071934 cttcagcacaaccaagatca 1071915
>dbj|AP003171.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-676F20, complete sequence Length = 137000 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 184 cctgaccatccatggctggcctcc 207 ||||||||||||| |||||||||| Sbjct: 573 cctgaccatccatagctggcctcc 596
>dbj|AB026112.1| Entamoeba histolytica EhPP2C gene for protein phosphatase 2C, complete cds Length = 1380 Score = 40.1 bits (20), Expect = 9.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 580 tcccatataccatcacaggccaaaacaa 607 ||||| ||||||||||| |||||||||| Sbjct: 1086 tcccaaataccatcacatgccaaaacaa 1059
>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome Length = 5411809 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 ttatatacaccacttcattc 89 |||||||||||||||||||| Sbjct: 2210636 ttatatacaccacttcattc 2210617
>emb|AJ938182.1| Staphylococcus aureus RF122 complete genome Length = 2742531 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 420 cttcagcacaaccaagatca 439 |||||||||||||||||||| Sbjct: 998889 cttcagcacaaccaagatca 998870
>gb|U81834.1|HSU81834 Human cosmid LL12NC01-95H4, ETV6 gene, exon 2 and partial cds Length = 36558 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 683 aaaagcttattttctttcat 702 |||||||||||||||||||| Sbjct: 34787 aaaagcttattttctttcat 34768
>gb|L41499.1|STAATL Staphylococcus aureus ORF1, partial cds, ORF2, ORF3, autolysin (atl) genes, complete cds Length = 5417 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 420 cttcagcacaaccaagatca 439 |||||||||||||||||||| Sbjct: 2179 cttcagcacaaccaagatca 2198
>gb|CP000023.1| Streptococcus thermophilus LMG 18311, complete genome Length = 1796846 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 20 aaaggctacaagaacaaatcctat 43 ||||||||| |||||||||||||| Sbjct: 415849 aaaggctactagaacaaatcctat 415826
>emb|AL672242.12| Mouse DNA sequence from clone RP23-83P17 on chromosome 17, complete sequence Length = 222709 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 agtcattggagcatcaggct 250 |||||||||||||||||||| Sbjct: 147735 agtcattggagcatcaggct 147754
>dbj|D17366.1|STAATLA Staphylococcus aureus atl gene for autolysin, complete cds and other ORFs Length = 6140 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 420 cttcagcacaaccaagatca 439 |||||||||||||||||||| Sbjct: 2571 cttcagcacaaccaagatca 2590
>dbj|AP003718.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-203F8, complete sequence Length = 85000 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 184 cctgaccatccatggctggcctcc 207 ||||||||||||| |||||||||| Sbjct: 83364 cctgaccatccatagctggcctcc 83387 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,621,439 Number of Sequences: 3902068 Number of extensions: 5621439 Number of successful extensions: 103639 Number of sequences better than 10.0: 83 Number of HSP's better than 10.0 without gapping: 83 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 103243 Number of HSP's gapped (non-prelim): 390 length of query: 704 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 681 effective length of database: 17,143,297,704 effective search space: 11674585736424 effective search space used: 11674585736424 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)