ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah60c17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TFR1_CRIGR (Q07891) Transferrin receptor protein 1 (TfR1) (TR) (... 32 1.9
2TFR1_RAT (Q99376) Transferrin receptor protein 1 (TfR1) (TR) (Tf... 32 2.5
3ALDH4_YEAST (P46367) Potassium-activated aldehyde dehydrogenase,... 30 9.4

>TFR1_CRIGR (Q07891) Transferrin receptor protein 1 (TfR1) (TR) (TfR) (Trfr)|
          Length = 757

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = -1

Query: 380 YNLNYSALSWTKLPSDLLFGLPSMPIRIKSFPTLLQVIRRARPRCPPSNPDDRTC 216
           Y   + + + T+ P     GLPS+P++  S     ++ +     CPPS   D  C
Sbjct: 306 YTPGFPSFNHTQFPPSQSSGLPSIPVQTISRKAAEKLFQNMETNCPPSWNTDSLC 360



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>TFR1_RAT (Q99376) Transferrin receptor protein 1 (TfR1) (TR) (TfR) (Trfr)|
           (Fragment)
          Length = 622

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 15/55 (27%), Positives = 26/55 (47%)
 Frame = -1

Query: 380 YNLNYSALSWTKLPSDLLFGLPSMPIRIKSFPTLLQVIRRARPRCPPSNPDDRTC 216
           Y   + + + T+ P     GLPS+P++  S     ++ +     CPPS   D +C
Sbjct: 171 YTPGFPSFNHTQFPPSQSSGLPSIPVQTISRAPAEKLFKNMEGNCPPSWNIDSSC 225



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>ALDH4_YEAST (P46367) Potassium-activated aldehyde dehydrogenase, mitochondrial|
           precursor (EC 1.2.1.3) (K(+)-activated acetaldehyde
           dehydrogenase) (K(+)-ACDH)
          Length = 519

 Score = 29.6 bits (65), Expect = 9.4
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = -2

Query: 682 SGRRRLTLDLGGASAPI*LDDAEHKSSILVVAAAAHYDS 566
           +G +++TL+LGG S  I   DAE K ++  +    +Y+S
Sbjct: 282 AGLKKVTLELGGKSPNIVFADAELKKAVQNIILGIYYNS 320


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,282,318
Number of Sequences: 219361
Number of extensions: 2216477
Number of successful extensions: 4845
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4845
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7139613222
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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