ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah60b14 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF025292.1|AF025292 Hordeum vulgare putative high-affinity potassium transporter (HvHAK1) mRNA, complete cds Length = 2730 Score = 1138 bits (574), Expect = 0.0 Identities = 577/578 (99%) Strand = Plus / Minus Query: 7 ccttgcttatgcctgggaggatacattcaaacttgagttgcaatatggaccttacattta 66 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2693 ccttgcttatgcctgggaggatacattcaaacttgagttgcaatatggaccttacattta 2634 Query: 67 acacatttagatgtacatacagagaaagtggaaaatgcattaaaaccttgcaaccaaaag 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2633 acacatttagatgtacatacagagaaagtggaaaatgcattaaaaccttgcaaccaaaag 2574 Query: 127 aaagaacacccctccctccccaacctgcctgcacctgacctgcatgtctccttattgaat 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2573 aaagaacacccctccctccccaacctgcctgcacctgacctgcatgtctccttattgaat 2514 Query: 187 cgacaatggcactttgccctcccaaatcaacgccatgcaccagaaccatcacatcacatg 246 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2513 cgacaatggcactttgccctcccaaatcaacgccatgcaccagaaccatcacatcacatg 2454 Query: 247 catgcttggggtgaacatgaactcgatcgatcgatcgatatcgatgactatatctcgtat 306 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 2453 catgcttggggtgaacatgaacccgatcgatcgatcgatatcgatgactatatctcgtat 2394 Query: 307 gtgatcccgactttgagcagctgatctttgggaatggccagcaccttgtgcccctccgtc 366 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2393 gtgatcccgactttgagcagctgatctttgggaatggccagcaccttgtgcccctccgtc 2334 Query: 367 aagttcttcctcaagaacgtgtagacatggttcaccacgatcttcttcaagatggaggac 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2333 aagttcttcctcaagaacgtgtagacatggttcaccacgatcttcttcaagatggaggac 2274 Query: 427 ttggcctccgccgtcacattggcctcccccatcagatacaccatccctcgctccacctct 486 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2273 ttggcctccgccgtcacattggcctcccccatcagatacaccatccctcgctccacctct 2214 Query: 487 ctgtcaatcagctgcttctcctcctccaccgcctggctcgtatggaagctcatcctccct 546 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2213 ctgtcaatcagctgcttctcctcctccaccgcctggctcgtatggaagctcatcctccct 2154 Query: 547 gaggctgagtggctgctcacccgcgcttggccttggac 584 |||||||||||||||||||||||||||||||||||||| Sbjct: 2153 gaggctgagtggctgctcacccgcgcttggccttggac 2116
>dbj|AB055630.1| Phragmites australis n-PhaHAK1 mRNA for high-affinity potassium transporter, complete cds Length = 2478 Score = 214 bits (108), Expect = 2e-52 Identities = 192/220 (87%) Strand = Plus / Minus Query: 293 actatatctcgtatgtgatcccgactttgagcagctgatctttgggaatggccagcacct 352 ||||||| || ||||||||||| |||||||||||||||||||| ||||||| || | | Sbjct: 2372 actatatttcatatgtgatcccaactttgagcagctgatctttcggaatggacaatgcgt 2313 Query: 353 tgtgcccctccgtcaagttcttcctcaagaacgtgtagacatggttcaccacgatcttct 412 | |||||||| ||||||||||||||||||| ||||||| || ||| || || ||||||| Sbjct: 2312 tatgcccctcattcaagttcttcctcaagaatgtgtagatatagttgacaactatcttct 2253 Query: 413 tcaagatggaggacttggcctccgccgtcacattggcctcccccatcagatacaccatcc 472 ||||||| || ||||||| | | || | |||||||||||| |||||||||||||||| || Sbjct: 2252 tcaagattgatgacttgggccctgctgacacattggcctctcccatcagatacaccaccc 2193 Query: 473 ctcgctccacctctctgtcaatcagctgcttctcctcctc 512 |||||||||||||||||||||||| ||||||||||||||| Sbjct: 2192 ctcgctccacctctctgtcaatcaactgcttctcctcctc 2153
>dbj|AB055631.1| Phragmites australis e-PhaHAK1A mRNA for high-affinity potassium transporter, complete cds Length = 2465 Score = 212 bits (107), Expect = 1e-51 Identities = 191/219 (87%) Strand = Plus / Minus Query: 294 ctatatctcgtatgtgatcccgactttgagcagctgatctttgggaatggccagcacctt 353 |||||| || ||||||||||| |||||||||||||||||||| ||||||| || | || Sbjct: 2368 ctatatttcatatgtgatcccaactttgagcagctgatctttcggaatggacaatgcgtt 2309 Query: 354 gtgcccctccgtcaagttcttcctcaagaacgtgtagacatggttcaccacgatcttctt 413 |||||||| ||||||||||||||||||| ||||||| || ||| || || |||||||| Sbjct: 2308 atgcccctcattcaagttcttcctcaagaatgtgtagatatagttgacaactatcttctt 2249 Query: 414 caagatggaggacttggcctccgccgtcacattggcctcccccatcagatacaccatccc 473 |||||| || ||||||| | | || | |||||||||||| |||||||||||||||| ||| Sbjct: 2248 caagattgacgacttgggccctgctgacacattggcctctcccatcagatacaccacccc 2189 Query: 474 tcgctccacctctctgtcaatcagctgcttctcctcctc 512 ||||||||||||||||||||||| ||||||||||||||| Sbjct: 2188 tcgctccacctctctgtcaatcaactgcttctcctcctc 2150
>dbj|AB055629.1| Phragmites australis u-PhaHAK1 mRNA for high-affinity potassium transporter, complete cds Length = 2477 Score = 212 bits (107), Expect = 1e-51 Identities = 191/219 (87%) Strand = Plus / Minus Query: 294 ctatatctcgtatgtgatcccgactttgagcagctgatctttgggaatggccagcacctt 353 |||||| || ||||||||||| |||||||||||||||||||| ||||||| || | || Sbjct: 2371 ctatatttcatatgtgatcccaactttgagcagctgatctttcggaatggacaatgcgtt 2312 Query: 354 gtgcccctccgtcaagttcttcctcaagaacgtgtagacatggttcaccacgatcttctt 413 |||||||| ||||||||||||||||||| ||||||| || ||| || || |||||||| Sbjct: 2311 atgcccctcattcaagttcttcctcaagaatgtgtagatatagttgacaactatcttctt 2252 Query: 414 caagatggaggacttggcctccgccgtcacattggcctcccccatcagatacaccatccc 473 |||||| || ||||||| | | || | |||||||||||| |||||||||||||||| ||| Sbjct: 2251 caagattgatgacttgggccctgctgacacattggcctctcccatcagatacaccacccc 2192 Query: 474 tcgctccacctctctgtcaatcagctgcttctcctcctc 512 ||||||||||||||||||||||| ||||||||||||||| Sbjct: 2191 tcgctccacctctctgtcaatcaactgcttctcctcctc 2153
>dbj|AB055632.1| Phragmites australis e-PhaHAK1B mRNA for high-affinity potassium transporter, complete cds Length = 2478 Score = 204 bits (103), Expect = 2e-49 Identities = 190/219 (86%) Strand = Plus / Minus Query: 294 ctatatctcgtatgtgatcccgactttgagcagctgatctttgggaatggccagcacctt 353 |||||| || ||||||||||| |||||||||||||||||||| ||||||| || | || Sbjct: 2371 ctatatttcatatgtgatcccaactttgagcagctgatctttcggaatggacaatgcgtt 2312 Query: 354 gtgcccctccgtcaagttcttcctcaagaacgtgtagacatggttcaccacgatcttctt 413 |||||||| ||||||||||||||||||| ||||||| || ||| || || |||||||| Sbjct: 2311 atgcccctcattcaagttcttcctcaagaatgtgtagatatagttgacaactatcttctt 2252 Query: 414 caagatggaggacttggcctccgccgtcacattggcctcccccatcagatacaccatccc 473 |||||| || ||||||| | | || | |||||||||||| |||||||||||||||| || Sbjct: 2251 caagattgatgacttgggccctgctgacacattggcctctcccatcagatacaccactcc 2192 Query: 474 tcgctccacctctctgtcaatcagctgcttctcctcctc 512 ||||||||||||||||||||||| ||||||||||||||| Sbjct: 2191 tcgctccacctctctgtcaatcaactgcttctcctcctc 2153
>ref|XM_472368.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2406 Score = 129 bits (65), Expect = 1e-26 Identities = 173/209 (82%) Strand = Plus / Minus Query: 307 gtgatcccgactttgagcagctgatctttgggaatggccagcaccttgtgcccctccgtc 366 |||||||| || |||||||||||||| || ||||| ||||| || ||||||| || ||| Sbjct: 2393 gtgatcccaaccttgagcagctgatcgtttggaatcgccagtgccctgtgcccttctgtc 2334 Query: 367 aagttcttcctcaagaacgtgtagacatggttcaccacgatcttcttcaagatggaggac 426 | ||||||||||| ||| ||||||| | ||||||| ||||| |||| | |||||| || Sbjct: 2333 aggttcttcctcaggaaggtgtagatgtagttcaccgcgatcctcttgaggatggacgag 2274 Query: 427 ttggcctccgccgtcacattggcctcccccatcagatacaccatccctcgctccacctct 486 |||| | |||||| ||| |||||||| |||||||| ||||||| || || ||||||| Sbjct: 2273 ttgggccccgccgacacgttggcctcgcccatcaggtacaccacgccgcggcccacctcc 2214 Query: 487 ctgtcaatcagctgcttctcctcctccac 515 ||||| |||||| |||||||||||||||| Sbjct: 2213 ctgtcgatcagccgcttctcctcctccac 2185
>emb|AL606610.3|OSJN00045 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0012E08, complete sequence Length = 106975 Score = 129 bits (65), Expect = 1e-26 Identities = 173/209 (82%) Strand = Plus / Minus Query: 307 gtgatcccgactttgagcagctgatctttgggaatggccagcaccttgtgcccctccgtc 366 |||||||| || |||||||||||||| || ||||| ||||| || ||||||| || ||| Sbjct: 55435 gtgatcccaaccttgagcagctgatcgtttggaatcgccagtgccctgtgcccttctgtc 55376 Query: 367 aagttcttcctcaagaacgtgtagacatggttcaccacgatcttcttcaagatggaggac 426 | ||||||||||| ||| ||||||| | ||||||| ||||| |||| | |||||| || Sbjct: 55375 aggttcttcctcaggaaggtgtagatgtagttcaccgcgatcctcttgaggatggacgag 55316 Query: 427 ttggcctccgccgtcacattggcctcccccatcagatacaccatccctcgctccacctct 486 |||| | |||||| ||| |||||||| |||||||| ||||||| || || ||||||| Sbjct: 55315 ttgggccccgccgacacgttggcctcgcccatcaggtacaccacgccgcggcccacctcc 55256 Query: 487 ctgtcaatcagctgcttctcctcctccac 515 ||||| |||||| |||||||||||||||| Sbjct: 55255 ctgtcgatcagccgcttctcctcctccac 55227
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 129 bits (65), Expect = 1e-26 Identities = 173/209 (82%) Strand = Plus / Minus Query: 307 gtgatcccgactttgagcagctgatctttgggaatggccagcaccttgtgcccctccgtc 366 |||||||| || |||||||||||||| || ||||| ||||| || ||||||| || ||| Sbjct: 19900627 gtgatcccaaccttgagcagctgatcgtttggaatcgccagtgccctgtgcccttctgtc 19900568 Query: 367 aagttcttcctcaagaacgtgtagacatggttcaccacgatcttcttcaagatggaggac 426 | ||||||||||| ||| ||||||| | ||||||| ||||| |||| | |||||| || Sbjct: 19900567 aggttcttcctcaggaaggtgtagatgtagttcaccgcgatcctcttgaggatggacgag 19900508 Query: 427 ttggcctccgccgtcacattggcctcccccatcagatacaccatccctcgctccacctct 486 |||| | |||||| ||| |||||||| |||||||| ||||||| || || ||||||| Sbjct: 19900507 ttgggccccgccgacacgttggcctcgcccatcaggtacaccacgccgcggcccacctcc 19900448 Query: 487 ctgtcaatcagctgcttctcctcctccac 515 ||||| |||||| |||||||||||||||| Sbjct: 19900447 ctgtcgatcagccgcttctcctcctccac 19900419 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 504 ctcctcctccaccgcctggc 523 |||||||||||||||||||| Sbjct: 30776386 ctcctcctccaccgcctggc 30776405 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 tcgatcgatcgatcgatatc 288 |||||||||||||||||||| Sbjct: 19091341 tcgatcgatcgatcgatatc 19091322
>dbj|AK119883.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-179-G11, full insert sequence Length = 2932 Score = 129 bits (65), Expect = 1e-26 Identities = 173/209 (82%) Strand = Plus / Minus Query: 307 gtgatcccgactttgagcagctgatctttgggaatggccagcaccttgtgcccctccgtc 366 |||||||| || |||||||||||||| || ||||| ||||| || ||||||| || ||| Sbjct: 2647 gtgatcccaaccttgagcagctgatcgttcggaatcgccagtgccctgtgcccttctgtc 2588 Query: 367 aagttcttcctcaagaacgtgtagacatggttcaccacgatcttcttcaagatggaggac 426 | ||||||||||| ||| ||||||| | ||||||| ||||| |||| | |||||| || Sbjct: 2587 aggttcttcctcaggaaggtgtagatgtagttcaccgcgatcctcttgaggatggacgag 2528 Query: 427 ttggcctccgccgtcacattggcctcccccatcagatacaccatccctcgctccacctct 486 |||| | |||||| ||| |||||||| |||||||| ||||||| || || ||||||| Sbjct: 2527 ttgggccccgccgacacgttggcctcgcccatcaggtacaccacgccgcggcccacctcc 2468 Query: 487 ctgtcaatcagctgcttctcctcctccac 515 ||||| |||||| |||||||||||||||| Sbjct: 2467 ctgtcgatcagccgcttctcctcctccac 2439
>emb|AJ427970.1|OSA427970 Oryza sativa partial mRNA for putative potassium transporter (HAK1 gene) Length = 2304 Score = 129 bits (65), Expect = 1e-26 Identities = 173/209 (82%) Strand = Plus / Minus Query: 307 gtgatcccgactttgagcagctgatctttgggaatggccagcaccttgtgcccctccgtc 366 |||||||| || |||||||||||||| || ||||| ||||| || ||||||| || ||| Sbjct: 2291 gtgatcccaaccttgagcagctgatcgtttggaatcgccagtgccctgtgcccttctgtc 2232 Query: 367 aagttcttcctcaagaacgtgtagacatggttcaccacgatcttcttcaagatggaggac 426 | ||||||||||| ||| ||||||| | ||||||| ||||| |||| | |||||| || Sbjct: 2231 aggttcttcctcaggaaggtgtagatgtagttcaccgcgatcctcttgaggatggacgag 2172 Query: 427 ttggcctccgccgtcacattggcctcccccatcagatacaccatccctcgctccacctct 486 |||| | |||||| ||| |||||||| |||||||| ||||||| || || ||||||| Sbjct: 2171 ttgggccccgccgacacgttggcctcgcccatcaggtacaccacgccgcggcccacctcc 2112 Query: 487 ctgtcaatcagctgcttctcctcctccac 515 ||||| |||||| |||||||||||||||| Sbjct: 2111 ctgtcgatcagccgcttctcctcctccac 2083
>dbj|AK105723.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-G03, full insert sequence Length = 2399 Score = 129 bits (65), Expect = 1e-26 Identities = 173/209 (82%) Strand = Plus / Minus Query: 307 gtgatcccgactttgagcagctgatctttgggaatggccagcaccttgtgcccctccgtc 366 |||||||| || |||||||||||||| || ||||| ||||| || ||||||| || ||| Sbjct: 2114 gtgatcccaaccttgagcagctgatcgtttggaatcgccagtgccctgtgcccttctgtc 2055 Query: 367 aagttcttcctcaagaacgtgtagacatggttcaccacgatcttcttcaagatggaggac 426 | ||||||||||| ||| ||||||| | ||||||| ||||| |||| | |||||| || Sbjct: 2054 aggttcttcctcaggaaggtgtagatgtagttcaccgcgatcctcttgaggatggacgag 1995 Query: 427 ttggcctccgccgtcacattggcctcccccatcagatacaccatccctcgctccacctct 486 |||| | |||||| ||| |||||||| |||||||| ||||||| || || ||||||| Sbjct: 1994 ttgggccccgccgacacgttggcctcgcccatcaggtacaccacgccgcggcccacctcc 1935 Query: 487 ctgtcaatcagctgcttctcctcctccac 515 ||||| |||||| |||||||||||||||| Sbjct: 1934 ctgtcgatcagccgcttctcctcctccac 1906
>dbj|AK100669.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023112J06, full insert sequence Length = 2937 Score = 129 bits (65), Expect = 1e-26 Identities = 173/209 (82%) Strand = Plus / Minus Query: 307 gtgatcccgactttgagcagctgatctttgggaatggccagcaccttgtgcccctccgtc 366 |||||||| || |||||||||||||| || ||||| ||||| || ||||||| || ||| Sbjct: 2671 gtgatcccaaccttgagcagctgatcgtttggaatcgccagtgccctgtgcccttctgtc 2612 Query: 367 aagttcttcctcaagaacgtgtagacatggttcaccacgatcttcttcaagatggaggac 426 | ||||||||||| ||| ||||||| | ||||||| ||||| |||| | |||||| || Sbjct: 2611 aggttcttcctcaggaaggtgtagatgtagttcaccgcgatcctcttgaggatggacgag 2552 Query: 427 ttggcctccgccgtcacattggcctcccccatcagatacaccatccctcgctccacctct 486 |||| | |||||| ||| |||||||| |||||||| ||||||| || || ||||||| Sbjct: 2551 ttgggccccgccgacacgttggcctcgcccatcaggtacaccacgccgcggcccacctcc 2492 Query: 487 ctgtcaatcagctgcttctcctcctccac 515 ||||| |||||| |||||||||||||||| Sbjct: 2491 ctgtcgatcagccgcttctcctcctccac 2463
>dbj|AK119891.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-180-A07, full insert sequence Length = 2931 Score = 121 bits (61), Expect = 3e-24 Identities = 172/209 (82%) Strand = Plus / Minus Query: 307 gtgatcccgactttgagcagctgatctttgggaatggccagcaccttgtgcccctccgtc 366 |||||||| || |||||||||||||| || ||||| ||||| || ||||||| || ||| Sbjct: 2645 gtgatcccaaccttgagcagctgatcgtttggaatcgccagtgccctgtgcccttctgtc 2586 Query: 367 aagttcttcctcaagaacgtgtagacatggttcaccacgatcttcttcaagatggaggac 426 | ||||||||||| ||| ||||||| | ||||||| ||||| |||| | |||||| || Sbjct: 2585 aggttcttcctcaggaaggtgtagatgtagttcaccgcgatcctcttgaggatggacgag 2526 Query: 427 ttggcctccgccgtcacattggcctcccccatcagatacaccatccctcgctccacctct 486 |||| | |||||| ||| |||||||| |||||||| ||||||| || || ||||||| Sbjct: 2525 ttgggccccgccgacacgttggcctcgcccatcaggtacaccacgccgcggcccacctcc 2466 Query: 487 ctgtcaatcagctgcttctcctcctccac 515 ||||| |||||| ||| |||||||||||| Sbjct: 2465 ctgtcgatcagccgctcctcctcctccac 2437
>dbj|AK101722.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033061B08, full insert sequence Length = 2930 Score = 121 bits (61), Expect = 3e-24 Identities = 172/209 (82%) Strand = Plus / Minus Query: 307 gtgatcccgactttgagcagctgatctttgggaatggccagcaccttgtgcccctccgtc 366 |||||||| || |||||||||||||| || ||||| ||||| || ||||||| || ||| Sbjct: 2646 gtgatcccaaccttgagcagctgatcgtttggaatcgccagtgccctgtgcccttctgtc 2587 Query: 367 aagttcttcctcaagaacgtgtagacatggttcaccacgatcttcttcaagatggaggac 426 | ||||||||||| ||| | ||||| | ||||||| ||||| |||| | |||||| || Sbjct: 2586 aggttcttcctcaggaaggcgtagatgtagttcaccgcgatcctcttgaggatggacgag 2527 Query: 427 ttggcctccgccgtcacattggcctcccccatcagatacaccatccctcgctccacctct 486 |||| | |||||| ||| |||||||| |||||||| ||||||| || || ||||||| Sbjct: 2526 ttgggccccgccgacacgttggcctcgcccatcaggtacaccacgccgcggcccacctcc 2467 Query: 487 ctgtcaatcagctgcttctcctcctccac 515 ||||| |||||| |||||||||||||||| Sbjct: 2466 ctgtcgatcagccgcttctcctcctccac 2438
>gb|AY324878.1| Oryza sativa (japonica cultivar-group) KUP1 mRNA, complete cds Length = 2655 Score = 113 bits (57), Expect = 7e-22 Identities = 171/209 (81%) Strand = Plus / Minus Query: 307 gtgatcccgactttgagcagctgatctttgggaatggccagcaccttgtgcccctccgtc 366 |||||||| || |||||||||||||| || ||||| ||||| || ||||||| || ||| Sbjct: 2445 gtgatcccaaccttgagcagctgatcgtttggaatcgccagtgccctgtgcccttctgtc 2386 Query: 367 aagttcttcctcaagaacgtgtagacatggttcaccacgatcttcttcaagatggaggac 426 | ||||||||||| ||| || ||| | ||||||| ||||| |||| | |||||| || Sbjct: 2385 aggttcttcctcaggaaggtaaagatgtagttcaccgcgatcctcttgaggatggacgag 2326 Query: 427 ttggcctccgccgtcacattggcctcccccatcagatacaccatccctcgctccacctct 486 |||| | |||||| ||| |||||||| |||||||| ||||||| || || ||||||| Sbjct: 2325 ttgggccccgccgacacgttggcctcgcccatcaggtacaccacgccgcggcccacctcc 2266 Query: 487 ctgtcaatcagctgcttctcctcctccac 515 ||||| |||||| |||||||||||||||| Sbjct: 2265 ctgtcgatcagccgcttctcctcctccac 2237
>gb|AY111612.1| Zea mays CL31833_-1 mRNA sequence Length = 559 Score = 107 bits (54), Expect = 4e-20 Identities = 132/158 (83%) Strand = Plus / Plus Query: 294 ctatatctcgtatgtgatcccgactttgagcagctgatctttgggaatggccagcacctt 353 |||||| || || ||||| || || ||||||||||| |||||||||||||||||| |||| Sbjct: 252 ctatatttcatacgtgatgccaaccttgagcagctggtctttgggaatggccagcgcctt 311 Query: 354 gtgcccctccgtcaagttcttcctcaagaacgtgtagacatggttcaccacgatcttctt 413 ||| ||||| |||| ||||||||||| ||||||||||| | ||| ||||| |||||||| Sbjct: 312 gtggccctcggtcaggttcttcctcaggaacgtgtagatgtagttgaccactatcttctt 371 Query: 414 caagatggaggacttggcctccgccgtcacattggcct 451 | || ||| || |||| | |||||| ||| ||||||| Sbjct: 372 gaggacggacgagttgggccccgccgacacgttggcct 409 Score = 42.1 bits (21), Expect = 2.0 Identities = 27/29 (93%) Strand = Plus / Plus Query: 496 agctgcttctcctcctccaccgcctggct 524 |||||||||||||||||| ||| |||||| Sbjct: 454 agctgcttctcctcctccgccgtctggct 482
>ref|XM_465982.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2581 Score = 87.7 bits (44), Expect = 4e-14 Identities = 173/216 (80%) Strand = Plus / Minus Query: 298 atctcgtatgtgatcccgactttgagcagctgatctttgggaatggccagcaccttgtgc 357 ||||| || |||||||| |||||||||||||| || ||||||| || |||| |||||||| Sbjct: 2435 atctcataggtgatcccaactttgagcagctggtccttgggaacggacagcgccttgtgc 2376 Query: 358 ccctccgtcaagttcttcctcaagaacgtgtagacatggttcaccacgatcttcttcaag 417 || ||| | | ||| ||||||| || |||||||| | ||| || |||||| ||||| Sbjct: 2375 ccttccctgaggtttttcctcagtaatgtgtagacgtagttgacgacgatccgcttcatc 2316 Query: 418 atggaggacttggcctccgccgtcacattggcctcccccatcagatacaccatccctcgc 477 | || ||| ||| |||||||||| || |||||||||||||| ||||||| ||| ||| Sbjct: 2315 accgacgaccccgccgccgccgtcacgttcgcctcccccatcaggtacaccaccccgcgc 2256 Query: 478 tccacctctctgtcaatcagctgcttctcctcctcc 513 ||| |||| ||| |||| | |||||||||||||| Sbjct: 2255 tccgcctccgcgtcgatcacccgcttctcctcctcc 2220
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 87.7 bits (44), Expect = 4e-14 Identities = 173/216 (80%) Strand = Plus / Plus Query: 298 atctcgtatgtgatcccgactttgagcagctgatctttgggaatggccagcaccttgtgc 357 ||||| || |||||||| |||||||||||||| || ||||||| || |||| |||||||| Sbjct: 18865091 atctcataggtgatcccaactttgagcagctggtccttgggaacggacagcgccttgtgc 18865150 Query: 358 ccctccgtcaagttcttcctcaagaacgtgtagacatggttcaccacgatcttcttcaag 417 || ||| | | ||| ||||||| || |||||||| | ||| || |||||| ||||| Sbjct: 18865151 ccttccctgaggtttttcctcagtaatgtgtagacgtagttgacgacgatccgcttcatc 18865210 Query: 418 atggaggacttggcctccgccgtcacattggcctcccccatcagatacaccatccctcgc 477 | || ||| ||| |||||||||| || |||||||||||||| ||||||| ||| ||| Sbjct: 18865211 accgacgaccccgccgccgccgtcacgttcgcctcccccatcaggtacaccaccccgcgc 18865270 Query: 478 tccacctctctgtcaatcagctgcttctcctcctcc 513 ||| |||| ||| |||| | |||||||||||||| Sbjct: 18865271 tccgcctccgcgtcgatcacccgcttctcctcctcc 18865306 Score = 58.0 bits (29), Expect = 3e-05 Identities = 167/213 (78%) Strand = Plus / Plus Query: 298 atctcgtatgtgatcccgactttgagcagctgatctttgggaatggccagcaccttgtgc 357 ||||| || |||||||| || ||||||||||| || || ||||||| |||| ||||||| Sbjct: 18891921 atctcataagtgatcccaaccttgagcagctggtccttaggaatggacagcgccttgtgt 18891980 Query: 358 ccctccgtcaagttcttcctcaagaacgtgtagacatggttcaccacgatcttcttcaag 417 ||||| | | ||| ||||||||| |||||||| | ||| || ||||||| ||||| Sbjct: 18891981 tcctccctaaggtttttcctcaagcgagtgtagacgtagttgacgacgatctgcttcatc 18892040 Query: 418 atggaggacttggcctccgccgtcacattggcctcccccatcagatacaccatccctcgc 477 | || ||| | | ||||| ||| || |||||||||||||| ||||||| ||||||| Sbjct: 18892041 aacgacgaccccggcgccgcctccacgttcgcctcccccatcaggtacaccaaccctcgc 18892100 Query: 478 tccacctctctgtcaatcagctgcttctcctcc 510 ||| |||| ||| |||| | ||||||||||| Sbjct: 18892101 tccgcctccgcgtcgatcaaccgcttctcctcc 18892133 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 268 ctcgatcgatcgatcgatatcgat 291 |||||||||||||||||| ||||| Sbjct: 30231170 ctcgatcgatcgatcgatctcgat 30231193 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 269 tcgatcgatcgatcgatatcgatg 292 |||||||||||||||| ||||||| Sbjct: 8954036 tcgatcgatcgatcgagatcgatg 8954059 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 agaaagtggaaaatgcatta 108 |||||||||||||||||||| Sbjct: 3221392 agaaagtggaaaatgcatta 3221373
>dbj|AP005845.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0461D06 Length = 112895 Score = 87.7 bits (44), Expect = 4e-14 Identities = 173/216 (80%) Strand = Plus / Plus Query: 298 atctcgtatgtgatcccgactttgagcagctgatctttgggaatggccagcaccttgtgc 357 ||||| || |||||||| |||||||||||||| || ||||||| || |||| |||||||| Sbjct: 28624 atctcataggtgatcccaactttgagcagctggtccttgggaacggacagcgccttgtgc 28683 Query: 358 ccctccgtcaagttcttcctcaagaacgtgtagacatggttcaccacgatcttcttcaag 417 || ||| | | ||| ||||||| || |||||||| | ||| || |||||| ||||| Sbjct: 28684 ccttccctgaggtttttcctcagtaatgtgtagacgtagttgacgacgatccgcttcatc 28743 Query: 418 atggaggacttggcctccgccgtcacattggcctcccccatcagatacaccatccctcgc 477 | || ||| ||| |||||||||| || |||||||||||||| ||||||| ||| ||| Sbjct: 28744 accgacgaccccgccgccgccgtcacgttcgcctcccccatcaggtacaccaccccgcgc 28803 Query: 478 tccacctctctgtcaatcagctgcttctcctcctcc 513 ||| |||| ||| |||| | |||||||||||||| Sbjct: 28804 tccgcctccgcgtcgatcacccgcttctcctcctcc 28839 Score = 58.0 bits (29), Expect = 3e-05 Identities = 167/213 (78%) Strand = Plus / Plus Query: 298 atctcgtatgtgatcccgactttgagcagctgatctttgggaatggccagcaccttgtgc 357 ||||| || |||||||| || ||||||||||| || || ||||||| |||| ||||||| Sbjct: 55454 atctcataagtgatcccaaccttgagcagctggtccttaggaatggacagcgccttgtgt 55513 Query: 358 ccctccgtcaagttcttcctcaagaacgtgtagacatggttcaccacgatcttcttcaag 417 ||||| | | ||| ||||||||| |||||||| | ||| || ||||||| ||||| Sbjct: 55514 tcctccctaaggtttttcctcaagcgagtgtagacgtagttgacgacgatctgcttcatc 55573 Query: 418 atggaggacttggcctccgccgtcacattggcctcccccatcagatacaccatccctcgc 477 | || ||| | | ||||| ||| || |||||||||||||| ||||||| ||||||| Sbjct: 55574 aacgacgaccccggcgccgcctccacgttcgcctcccccatcaggtacaccaaccctcgc 55633 Query: 478 tccacctctctgtcaatcagctgcttctcctcc 510 ||| |||| ||| |||| | ||||||||||| Sbjct: 55634 tccgcctccgcgtcgatcaaccgcttctcctcc 55666
>dbj|AK106353.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-A02, full insert sequence Length = 2581 Score = 87.7 bits (44), Expect = 4e-14 Identities = 173/216 (80%) Strand = Plus / Minus Query: 298 atctcgtatgtgatcccgactttgagcagctgatctttgggaatggccagcaccttgtgc 357 ||||| || |||||||| |||||||||||||| || ||||||| || |||| |||||||| Sbjct: 2435 atctcataggtgatcccaactttgagcagctggtccttgggaacggacagcgccttgtgc 2376 Query: 358 ccctccgtcaagttcttcctcaagaacgtgtagacatggttcaccacgatcttcttcaag 417 || ||| | | ||| ||||||| || |||||||| | ||| || |||||| ||||| Sbjct: 2375 ccttccctgaggtttttcctcagtaatgtgtagacgtagttgacgacgatccgcttcatc 2316 Query: 418 atggaggacttggcctccgccgtcacattggcctcccccatcagatacaccatccctcgc 477 | || ||| ||| |||||||||| || |||||||||||||| ||||||| ||| ||| Sbjct: 2315 accgacgaccccgccgccgccgtcacgttcgcctcccccatcaggtacaccaccccgcgc 2256 Query: 478 tccacctctctgtcaatcagctgcttctcctcctcc 513 ||| |||| ||| |||| | |||||||||||||| Sbjct: 2255 tccgcctccgcgtcgatcacccgcttctcctcctcc 2220
>ref|XM_465985.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2795 Score = 58.0 bits (29), Expect = 3e-05 Identities = 167/213 (78%) Strand = Plus / Minus Query: 298 atctcgtatgtgatcccgactttgagcagctgatctttgggaatggccagcaccttgtgc 357 ||||| || |||||||| || ||||||||||| || || ||||||| |||| ||||||| Sbjct: 2555 atctcataagtgatcccaaccttgagcagctggtccttaggaatggacagcgccttgtgt 2496 Query: 358 ccctccgtcaagttcttcctcaagaacgtgtagacatggttcaccacgatcttcttcaag 417 ||||| | | ||| ||||||||| |||||||| | ||| || ||||||| ||||| Sbjct: 2495 tcctccctaaggtttttcctcaagcgagtgtagacgtagttgacgacgatctgcttcatc 2436 Query: 418 atggaggacttggcctccgccgtcacattggcctcccccatcagatacaccatccctcgc 477 | || ||| | | ||||| ||| || |||||||||||||| ||||||| ||||||| Sbjct: 2435 aacgacgaccccggcgccgcctccacgttcgcctcccccatcaggtacaccaaccctcgc 2376 Query: 478 tccacctctctgtcaatcagctgcttctcctcc 510 ||| |||| ||| |||| | ||||||||||| Sbjct: 2375 tccgcctccgcgtcgatcaaccgcttctcctcc 2343
>dbj|AK119325.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-131-A11, full insert sequence Length = 2795 Score = 58.0 bits (29), Expect = 3e-05 Identities = 167/213 (78%) Strand = Plus / Minus Query: 298 atctcgtatgtgatcccgactttgagcagctgatctttgggaatggccagcaccttgtgc 357 ||||| || |||||||| || ||||||||||| || || ||||||| |||| ||||||| Sbjct: 2555 atctcataagtgatcccaaccttgagcagctggtccttaggaatggacagcgccttgtgt 2496 Query: 358 ccctccgtcaagttcttcctcaagaacgtgtagacatggttcaccacgatcttcttcaag 417 ||||| | | ||| ||||||||| |||||||| | ||| || ||||||| ||||| Sbjct: 2495 tcctccctaaggtttttcctcaagcgagtgtagacgtagttgacgacgatctgcttcatc 2436 Query: 418 atggaggacttggcctccgccgtcacattggcctcccccatcagatacaccatccctcgc 477 | || ||| | | ||||| ||| || |||||||||||||| ||||||| ||||||| Sbjct: 2435 aacgacgaccccggcgccgcctccacgttcgcctcccccatcaggtacaccaaccctcgc 2376 Query: 478 tccacctctctgtcaatcagctgcttctcctcc 510 ||| |||| ||| |||| | ||||||||||| Sbjct: 2375 tccgcctccgcgtcgatcaaccgcttctcctcc 2343
>gb|AC129162.5| Rattus norvegicus 9 BAC CH230-108L13 (Children's Hospital Oakland Research Institute) complete sequence Length = 245677 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 224 caccagaaccatcacatcacat 245 |||||||||||||||||||||| Sbjct: 10276 caccagaaccatcacatcacat 10255
>emb|AL160010.14| Human DNA sequence from clone RP11-146P20 on chromosome 10 Contains part of the gene for VPS10 domain receptor protein SORCS 1, complete sequence Length = 158724 Score = 44.1 bits (22), Expect = 0.51 Identities = 22/22 (100%) Strand = Plus / Minus Query: 82 catacagagaaagtggaaaatg 103 |||||||||||||||||||||| Sbjct: 49795 catacagagaaagtggaaaatg 49774
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 265 gaactcgatcgatcgatcgatatcga 290 |||||||||||||||||||| ||||| Sbjct: 29654304 gaactcgatcgatcgatcgagatcga 29654329 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 497 gctgcttctcctcctccacc 516 |||||||||||||||||||| Sbjct: 4007193 gctgcttctcctcctccacc 4007174 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 gaactcgatcgatcgatcga 284 |||||||||||||||||||| Sbjct: 2913710 gaactcgatcgatcgatcga 2913691
>dbj|AP005463.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0712G01 Length = 87056 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 265 gaactcgatcgatcgatcgatatcga 290 |||||||||||||||||||| ||||| Sbjct: 27418 gaactcgatcgatcgatcgagatcga 27443
>dbj|AP004329.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1663_H12 Length = 125422 Score = 44.1 bits (22), Expect = 0.51 Identities = 25/26 (96%) Strand = Plus / Plus Query: 265 gaactcgatcgatcgatcgatatcga 290 |||||||||||||||||||| ||||| Sbjct: 97889 gaactcgatcgatcgatcgagatcga 97914
>gb|AC182676.2| Populus trichocarpa clone Pop1-29E23, complete sequence Length = 62085 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 33 tcaaacttgagttgcaatatg 53 ||||||||||||||||||||| Sbjct: 18358 tcaaacttgagttgcaatatg 18378
>emb|AL359693.11| Human DNA sequence from clone RP11-244G12 on chromosome 6, complete sequence Length = 149696 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 61 catttaacacatttagatgta 81 ||||||||||||||||||||| Sbjct: 116833 catttaacacatttagatgta 116853
>emb|AL121583.25|HSBA358N2 Human DNA sequence from clone RP11-358N2 on chromosome 20 Contains the 5' end of the ASXL1 gene for additional sex combs like 1 (Drosophila) and a CpG island, complete sequence Length = 84710 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 84 tacagagaaagtggaaaatgc 104 ||||||||||||||||||||| Sbjct: 65730 tacagagaaagtggaaaatgc 65750
>gb|AC025765.6| Homo sapiens chromosome 5 clone CTB-57H20, complete sequence Length = 218515 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 100 aatgcattaaaaccttgcaac 120 ||||||||||||||||||||| Sbjct: 12945 aatgcattaaaaccttgcaac 12925
>gb|AC093754.2| Homo sapiens BAC clone RP11-51G24 from 4, complete sequence Length = 149920 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 91 aaagtggaaaatgcattaaaa 111 ||||||||||||||||||||| Sbjct: 43977 aaagtggaaaatgcattaaaa 43997
>gb|AC127540.10| Homo sapiens chromosome 17, clone RP1-77H15, complete sequence Length = 149000 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 135 cccctccctccccaacctgcc 155 ||||||||||||||||||||| Sbjct: 133899 cccctccctccccaacctgcc 133919
>dbj|AK203844.1| Mus musculus cDNA, clone:Y1G0146G06, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000047873, based on BLAT search Length = 409 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 144 ccccaacctgcctgcacctga 164 ||||||||||||||||||||| Sbjct: 179 ccccaacctgcctgcacctga 199
>gb|AC008407.4|AC008407 Homo sapiens chromosome 5 clone CTC-278A2, complete sequence Length = 78849 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 100 aatgcattaaaaccttgcaac 120 ||||||||||||||||||||| Sbjct: 67433 aatgcattaaaaccttgcaac 67413
>gb|BC082942.1| Xenopus laevis hypothetical LOC494805, mRNA (cDNA clone MGC:86250 IMAGE:6959662), complete cds Length = 1641 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 124 aagaaagaacacccctccctc 144 ||||||||||||||||||||| Sbjct: 703 aagaaagaacacccctccctc 683
>gb|AC005822.1|AC005822 Homo sapiens chromosome 17, clone hRPK.209_J_20, complete sequence Length = 169931 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 135 cccctccctccccaacctgcc 155 ||||||||||||||||||||| Sbjct: 6721 cccctccctccccaacctgcc 6701
>emb|AJ009612.5|HSAJ9612 Homo sapiens chromosome 17 sequence from PAC 77H15 region D17S842-D17S953 map 17p11.2, complete sequence Length = 148978 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Minus Query: 135 cccctccctccccaacctgcc 155 ||||||||||||||||||||| Sbjct: 15103 cccctccctccccaacctgcc 15083
>ref|XM_476331.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 807 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 497 gctgcttctcctcctccacc 516 |||||||||||||||||||| Sbjct: 27 gctgcttctcctcctccacc 46
>ref|XM_483642.1| Oryza sativa (japonica cultivar-group), mRNA Length = 231 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 aactcgatcgatcgatcgat 285 |||||||||||||||||||| Sbjct: 13 aactcgatcgatcgatcgat 32
>gb|AC111116.13| Mus musculus chromosome 16, clone RP23-214I13, complete sequence Length = 173839 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 497 gctgcttctcctcctccaccgcct 520 |||||||||| ||||||||||||| Sbjct: 76572 gctgcttctcttcctccaccgcct 76549
>gb|AC105767.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1126_B11, complete sequence Length = 103615 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 tcgatcgatcgatcgatatc 288 |||||||||||||||||||| Sbjct: 46914 tcgatcgatcgatcgatatc 46933
>gb|AC120988.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0017N18, complete sequence Length = 156643 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 gatcgatcgatcgatatcga 290 |||||||||||||||||||| Sbjct: 52722 gatcgatcgatcgatatcga 52741
>gb|AC136218.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0039A21, complete sequence Length = 139074 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 tcgatcgatcgatcgatatc 288 |||||||||||||||||||| Sbjct: 132987 tcgatcgatcgatcgatatc 133006
>gb|AC129717.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0079H23, complete sequence Length = 191765 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 aactcgatcgatcgatcgat 285 |||||||||||||||||||| Sbjct: 56764 aactcgatcgatcgatcgat 56783
>gb|AC135925.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0560C03, complete sequence Length = 177861 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 aactcgatcgatcgatcgat 285 |||||||||||||||||||| Sbjct: 113192 aactcgatcgatcgatcgat 113211
>gb|AC007858.1| Oryza sativa (japonica cultivar-group) chromosome 5 clone BAC 10A19I, complete sequence Length = 99587 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 gatcgatcgatcgatatcga 290 |||||||||||||||||||| Sbjct: 40057 gatcgatcgatcgatatcga 40076
>gb|BT014197.1| Lycopersicon esculentum clone 133374R, mRNA sequence Length = 1207 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 ggaaaatgcattaaaacctt 115 |||||||||||||||||||| Sbjct: 5 ggaaaatgcattaaaacctt 24
>ref|NM_004271.3| Homo sapiens lymphocyte antigen 86 (LY86), mRNA Length = 895 Score = 40.1 bits (20), Expect = 7.9 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 483 ctctctgtcaatcagctgcttctcctcc 510 |||||||||| ||||||||||||||||| Sbjct: 625 ctctctgtca-tcagctgcttctcctcc 599
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 262 catgaactcgatcgatcgatcgat 285 ||||| |||||||||||||||||| Sbjct: 15547132 catgagctcgatcgatcgatcgat 15547155
>gb|AC099323.6| Oryza sativa chromosome 3 BAC OSJNBa0065F09 genomic sequence, complete sequence Length = 115079 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 262 catgaactcgatcgatcgatcgat 285 ||||| |||||||||||||||||| Sbjct: 46683 catgagctcgatcgatcgatcgat 46706
>ref|XM_752195.1| Ustilago maydis 521 hypothetical protein (UM01141.1) partial mRNA Length = 6588 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 504 ctcctcctccaccgcctggc 523 |||||||||||||||||||| Sbjct: 4652 ctcctcctccaccgcctggc 4671
>ref|XM_756171.1| Ustilago maydis 521 hypothetical protein (UM05117.1) partial mRNA Length = 2967 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 501 cttctcctcctccaccgcct 520 |||||||||||||||||||| Sbjct: 481 cttctcctcctccaccgcct 500
>emb|CR974448.6| Pig DNA sequence from clone CH242-250F12 on chromosome 17, complete sequence Length = 57884 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 497 gctgcttctcctcctccacc 516 |||||||||||||||||||| Sbjct: 22077 gctgcttctcctcctccacc 22096
>emb|AL163279.2|HS21C079 Homo sapiens chromosome 21 segment HS21C079 Length = 340000 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 agaaagaacacccctccctc 144 |||||||||||||||||||| Sbjct: 141971 agaaagaacacccctccctc 141952
>emb|AL606970.12| Human DNA sequence from clone RP11-503C24 on chromosome 6 Contains the 3' end of a novel gene, up to five novel genes, (inclusing FLJ31232 and pp13671), a meningioma expressed antigen 6 (coiled-coil proline-rich) (MGEA6) pseudogene and three CpG islands, complete sequence Length = 161863 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 159 acctgacctgcatgtctccttatt 182 |||||||||||||| ||||||||| Sbjct: 12376 acctgacctgcatgactccttatt 12353
>emb|AL390318.20| Human DNA sequence from clone RP11-142L16 on chromosome 10 Contains the 5' end of the PIP5K2A gene for phosphatidylinositol-4-phosphate 5-kinase type II alpha and one CpG island, complete sequence Length = 164955 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 109 aaaccttgcaaccaaaagaa 128 |||||||||||||||||||| Sbjct: 116297 aaaccttgcaaccaaaagaa 116278
>emb|AL356419.10| Human DNA sequence from clone RP11-99L6 on chromosome 10, complete sequence Length = 126232 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 agaacacccctccctcccca 148 |||||||||||||||||||| Sbjct: 96742 agaacacccctccctcccca 96761
>emb|AL139395.7| Human DNA sequence from clone RP11-130N24 on chromosome Xq13.3-21.2 Contains the 3' end of gene KIAA2022, complete sequence Length = 146610 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 196 cactttgccctcccaaatca 215 |||||||||||||||||||| Sbjct: 70579 cactttgccctcccaaatca 70598
>emb|AL133538.16| Human DNA sequence from clone RP11-550N16 on chromosome 6q26-27 Contains a CpG island, complete sequence Length = 109238 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 20 tgggaggatacattcaaact 39 |||||||||||||||||||| Sbjct: 31857 tgggaggatacattcaaact 31876
>emb|AL031123.14|HS80N2 Human DNA sequence from clone RP1-80N2 on chromosome 6p24.1-25.3 Contains the gene for MD-1,RP105-associated, part of a putative novel gene and three putative CpG islands, complete sequence Length = 193731 Score = 40.1 bits (20), Expect = 7.9 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 483 ctctctgtcaatcagctgcttctcctcc 510 |||||||||| ||||||||||||||||| Sbjct: 117673 ctctctgtca-tcagctgcttctcctcc 117647
>gb|AC083905.20| Homo sapiens 3 BAC RP11-124N24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 109471 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 attaaaaccttgcaaccaaa 124 |||||||||||||||||||| Sbjct: 87431 attaaaaccttgcaaccaaa 87412
>emb|AL731601.3|OSJN00245 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0044M19, complete sequence Length = 188317 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 tcgatcgatcgatcgatatc 288 |||||||||||||||||||| Sbjct: 183266 tcgatcgatcgatcgatatc 183247
>gb|BC038846.1| Homo sapiens lymphocyte antigen 86, mRNA (cDNA clone MGC:47723 IMAGE:6015123), complete cds Length = 905 Score = 40.1 bits (20), Expect = 7.9 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 483 ctctctgtcaatcagctgcttctcctcc 510 |||||||||| ||||||||||||||||| Sbjct: 635 ctctctgtca-tcagctgcttctcctcc 609
>emb|AL606691.4|OSJN00081 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060N03, complete sequence Length = 179798 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 504 ctcctcctccaccgcctggc 523 |||||||||||||||||||| Sbjct: 43808 ctcctcctccaccgcctggc 43827
>gb|AF064861.5| Homo sapiens chromosome 21 clone RP1-128M19 map q22.2, complete sequence Length = 135578 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 agaaagaacacccctccctc 144 |||||||||||||||||||| Sbjct: 24168 agaaagaacacccctccctc 24149
>gb|AC112673.7| Homo sapiens chromosome 8, clone RP11-212F11, complete sequence Length = 167547 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 aacacccctccctccccaac 150 |||||||||||||||||||| Sbjct: 77523 aacacccctccctccccaac 77542
>gb|AC006432.15| Homo sapiens 12p13 PAC RPCI11-726G1 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 180685 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 cccaacctgcctgcacctga 164 |||||||||||||||||||| Sbjct: 94752 cccaacctgcctgcacctga 94733
>gb|AC016780.6| Genomic Sequence For Oryza sativa (japonica cultivar-group) cultivar Nipponbare Clone OSJNBa0061K21 From Chromosome 10, complete sequence Length = 112721 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 atcgatcgatcgatatcgat 291 |||||||||||||||||||| Sbjct: 4922 atcgatcgatcgatatcgat 4941
>gb|AC090599.4| Homo sapiens chromosome 11, clone RP11-674E24, complete sequence Length = 165287 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 acattcaaacttgagttgca 48 |||||||||||||||||||| Sbjct: 97623 acattcaaacttgagttgca 97604
>gb|AC079890.13| Oryza sativa chromosome 10 BAC OSJNBb0089A17 genomic sequence, complete sequence Length = 132927 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 aactcgatcgatcgatcgat 285 |||||||||||||||||||| Sbjct: 58726 aactcgatcgatcgatcgat 58745
>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI, complete sequence Length = 1813164 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 122 aaaagaaagaacacccctccctcc 145 |||||||||||| ||||||||||| Sbjct: 857742 aaaagaaagaacccccctccctcc 857719
>gb|AY958432.1| Homo sapiens methionine sulfoxide reductase gene, complete cds, alternatively spliced Length = 379048 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 aacacccctccctccccaac 150 |||||||||||||||||||| Sbjct: 305931 aacacccctccctccccaac 305912
>gb|BC064602.1| Homo sapiens bromodomain and WD repeat domain containing 1, transcript variant 3, mRNA (cDNA clone IMAGE:5785347), complete cds Length = 2488 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 agaaagaacacccctccctc 144 |||||||||||||||||||| Sbjct: 1226 agaaagaacacccctccctc 1245
>dbj|AB232169.1| Tragulus javanicus DNA, SINE like sequence, clone: LMD-RTE-00806 Length = 296 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 cccctccctccccaacctgc 154 |||||||||||||||||||| Sbjct: 37 cccctccctccccaacctgc 18
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 tcgatcgatcgatcgatatc 288 |||||||||||||||||||| Sbjct: 25348748 tcgatcgatcgatcgatatc 25348767 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 494 tcagctgcttctcctcctcc 513 |||||||||||||||||||| Sbjct: 17980664 tcagctgcttctcctcctcc 17980683
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 aactcgatcgatcgatcgat 285 |||||||||||||||||||| Sbjct: 21626822 aactcgatcgatcgatcgat 21626841 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 atcgatcgatcgatatcgat 291 |||||||||||||||||||| Sbjct: 14065284 atcgatcgatcgatatcgat 14065303
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 269 tcgatcgatcgatcgatatcgatg 292 ||||||||||||||||| |||||| Sbjct: 13919391 tcgatcgatcgatcgatctcgatg 13919368
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 aactcgatcgatcgatcgat 285 |||||||||||||||||||| Sbjct: 27412150 aactcgatcgatcgatcgat 27412169
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 264 tgaactcgatcgatcgatcgatatcgat 291 |||| ||||||||||||||||| ||||| Sbjct: 28772090 tgaagtcgatcgatcgatcgatctcgat 28772063
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 gatcgatcgatcgatatcga 290 |||||||||||||||||||| Sbjct: 28624930 gatcgatcgatcgatatcga 28624949 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 aactcgatcgatcgatcgat 285 |||||||||||||||||||| Sbjct: 27181796 aactcgatcgatcgatcgat 27181815 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 tcgatcgatcgatcgatatc 288 |||||||||||||||||||| Sbjct: 18165732 tcgatcgatcgatcgatatc 18165751
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 262 catgaactcgatcgatcgatcgat 285 ||||| |||||||||||||||||| Sbjct: 15541666 catgagctcgatcgatcgatcgat 15541689
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 aactcgatcgatcgatcgat 285 |||||||||||||||||||| Sbjct: 39901071 aactcgatcgatcgatcgat 39901052
>gb|AC092821.11| Homo sapiens 12 BAC RP11-525E9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 121181 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 cccaacctgcctgcacctga 164 |||||||||||||||||||| Sbjct: 98900 cccaacctgcctgcacctga 98919
>emb|BX470242.10| Zebrafish DNA sequence from clone CH211-195I24 in linkage group 16, complete sequence Length = 114149 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 477 ctccacctctctgtcaatca 496 |||||||||||||||||||| Sbjct: 8898 ctccacctctctgtcaatca 8917
>dbj|AB186411.1| Arenicola brasiliensis mRNA for taurocyamine kinase, complete cds Length = 1811 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 493 atcagctgcttctcctcctc 512 |||||||||||||||||||| Sbjct: 542 atcagctgcttctcctcctc 523
>dbj|AB036825.1| Chlorella vulgaris trx mRNA for thioredoxin, partial cds Length = 803 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 caagttcttcctcaagaacg 385 |||||||||||||||||||| Sbjct: 136 caagttcttcctcaagaacg 155
>gb|AC153986.8| Mus musculus 6 BAC RP24-105F24 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 162415 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 tgtacatacagagaaagtgg 97 |||||||||||||||||||| Sbjct: 54405 tgtacatacagagaaagtgg 54424
>ref|NM_001007246.1| Homo sapiens bromodomain and WD repeat domain containing 1 (BRWD1), transcript variant 3, mRNA Length = 2488 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 agaaagaacacccctccctc 144 |||||||||||||||||||| Sbjct: 1234 agaaagaacacccctccctc 1253
>dbj|AP003433.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0004D12 Length = 138136 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 aactcgatcgatcgatcgat 285 |||||||||||||||||||| Sbjct: 81779 aactcgatcgatcgatcgat 81760
>gb|AF129408.4| Homo sapiens chromosome 21 clone RP1-31K18 map q22.2, complete sequence Length = 141843 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 agaaagaacacccctccctc 144 |||||||||||||||||||| Sbjct: 134961 agaaagaacacccctccctc 134942
>dbj|AP005243.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1205_F02 Length = 112862 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 264 tgaactcgatcgatcgatcgatatcgat 291 |||| ||||||||||||||||| ||||| Sbjct: 79651 tgaagtcgatcgatcgatcgatctcgat 79624
>dbj|AP005099.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0008J01 Length = 159900 Score = 40.1 bits (20), Expect = 7.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 264 tgaactcgatcgatcgatcgatatcgat 291 |||| ||||||||||||||||| ||||| Sbjct: 29776 tgaagtcgatcgatcgatcgatctcgat 29749
>dbj|AP007257.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0019L07 Length = 131650 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 497 gctgcttctcctcctccacc 516 |||||||||||||||||||| Sbjct: 50848 gctgcttctcctcctccacc 50829
>dbj|AP003019.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0035I03 Length = 153749 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 497 gctgcttctcctcctccacc 516 |||||||||||||||||||| Sbjct: 113069 gctgcttctcctcctccacc 113050
>dbj|AP007223.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0046E09 Length = 146776 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 gaactcgatcgatcgatcga 284 |||||||||||||||||||| Sbjct: 73856 gaactcgatcgatcgatcga 73837
>dbj|AP005828.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0702F05 Length = 145018 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 gaactcgatcgatcgatcga 284 |||||||||||||||||||| Sbjct: 1659 gaactcgatcgatcgatcga 1640
>dbj|AP004843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1103G11 Length = 182931 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 agaaagtggaaaatgcatta 108 |||||||||||||||||||| Sbjct: 93579 agaaagtggaaaatgcatta 93560
>dbj|AP005421.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0435D08 Length = 148912 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 269 tcgatcgatcgatcgatatcgatg 292 ||||||||||||||||| |||||| Sbjct: 73068 tcgatcgatcgatcgatctcgatg 73045
>dbj|AP005321.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0650H04 Length = 134533 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 269 tcgatcgatcgatcgatatcgatg 292 ||||||||||||||||| |||||| Sbjct: 21865 tcgatcgatcgatcgatctcgatg 21842
>gb|AC153382.1| Mus musculus 10 BAC RP23-9F3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 206125 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 tagatgtacatacagagaaa 93 |||||||||||||||||||| Sbjct: 95777 tagatgtacatacagagaaa 95758
>dbj|AP005803.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0060K08 Length = 159626 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 269 tcgatcgatcgatcgatatcgatg 292 |||||||||||||||| ||||||| Sbjct: 26645 tcgatcgatcgatcgagatcgatg 26668
>dbj|AP005284.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1121A12 Length = 138796 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 268 ctcgatcgatcgatcgatatcgat 291 |||||||||||||||||| ||||| Sbjct: 32087 ctcgatcgatcgatcgatctcgat 32110
>gb|AF229187.1|AF229187 Oryza sativa subsp. japonica BAC clone nbxb0032I20, complete sequence Length = 144651 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 atcgatcgatcgatatcgat 291 |||||||||||||||||||| Sbjct: 81413 atcgatcgatcgatatcgat 81432
>dbj|AP004704.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0544G09 Length = 137481 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 aactcgatcgatcgatcgat 285 |||||||||||||||||||| Sbjct: 38945 aactcgatcgatcgatcgat 38964
>ref|XM_555863.1| Anopheles gambiae str. PEST ENSANGP00000027426 (ENSANGG00000023416), partial mRNA Length = 667 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 403 acgatcttcttcaagatggaggac 426 ||||||||||||||||| |||||| Sbjct: 371 acgatcttcttcaagatcgaggac 394
>dbj|AK109550.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-121-H12, full insert sequence Length = 2509 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 agaaagtggaaaatgcatta 108 |||||||||||||||||||| Sbjct: 2035 agaaagtggaaaatgcatta 2054
>gb|AC005659.3|AC005659 citb_161_g_12, complete sequence Length = 116058 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 agaacacccctccctcccca 148 |||||||||||||||||||| Sbjct: 16173 agaacacccctccctcccca 16154
>dbj|AK063212.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-112-D08, full insert sequence Length = 762 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 tcgatcgatcgatcgatatc 288 |||||||||||||||||||| Sbjct: 184 tcgatcgatcgatcgatatc 165
>emb|AL844171.13| Zebrafish DNA sequence from clone DKEY-237G17, complete sequence Length = 172321 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 477 ctccacctctctgtcaatca 496 |||||||||||||||||||| Sbjct: 166662 ctccacctctctgtcaatca 166681
>emb|AL109786.1|IRO814975 Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 814975 Length = 1882 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 agaaagaacacccctccctc 144 |||||||||||||||||||| Sbjct: 657 agaaagaacacccctccctc 676
>emb|AL109785.1|IRO273140 Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 273140 Length = 1173 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 agaaagaacacccctccctc 144 |||||||||||||||||||| Sbjct: 242 agaaagaacacccctccctc 261
>emb|CT030655.7| Mouse DNA sequence from clone RP23-259C9 on chromosome 13, complete sequence Length = 120944 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 494 tcagctgcttctcctcctcc 513 |||||||||||||||||||| Sbjct: 75916 tcagctgcttctcctcctcc 75897
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 aactcgatcgatcgatcgat 285 |||||||||||||||||||| Sbjct: 21638485 aactcgatcgatcgatcgat 21638504 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 atcgatcgatcgatatcgat 291 |||||||||||||||||||| Sbjct: 14073526 atcgatcgatcgatatcgat 14073545
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 tcgatcgatcgatcgatatc 288 |||||||||||||||||||| Sbjct: 25276924 tcgatcgatcgatcgatatc 25276943 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 494 tcagctgcttctcctcctcc 513 |||||||||||||||||||| Sbjct: 17906985 tcagctgcttctcctcctcc 17907004
>emb|AL831798.3|CNS08CAB Oryza sativa chromosome 12, . BAC OSJNBb0031E19 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 124294 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 494 tcagctgcttctcctcctcc 513 |||||||||||||||||||| Sbjct: 105028 tcagctgcttctcctcctcc 105009
>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21, complete sequence Length = 151936 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 tcgatcgatcgatcgatatc 288 |||||||||||||||||||| Sbjct: 24862 tcgatcgatcgatcgatatc 24843
>emb|AL837528.5|CNS08CAR Oryza sativa chromosome 12, . BAC OSJNBb0062H20 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 152914 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 tcgatcgatcgatcgatatc 288 |||||||||||||||||||| Sbjct: 15558 tcgatcgatcgatcgatatc 15577
>emb|AL928744.3|CNS08CBH Oryza sativa chromosome 12, . BAC OSJNBa0041B10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 147543 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 494 tcagctgcttctcctcctcc 513 |||||||||||||||||||| Sbjct: 17892 tcagctgcttctcctcctcc 17873
>gb|AC141471.4| Mus musculus BAC clone RP24-326K11 from 18, complete sequence Length = 216048 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 543 ccctgaggctgagtggctgc 562 |||||||||||||||||||| Sbjct: 101357 ccctgaggctgagtggctgc 101338
>gb|AC134566.5| Mus musculus BAC clone RP24-196G8 from 3, complete sequence Length = 147839 Score = 40.1 bits (20), Expect = 7.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 467 ccatccctcgctccacctctctgt 490 ||||||||| |||||||||||||| Sbjct: 16316 ccatccctctctccacctctctgt 16293
>emb|AL845492.10| Mouse DNA sequence from clone RP23-222P7 on chromosome 2, complete sequence Length = 225684 Score = 40.1 bits (20), Expect = 7.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 agaaagtggaaaatgcatta 108 |||||||||||||||||||| Sbjct: 189613 agaaagtggaaaatgcatta 189594
>dbj|AB020499.1| Homo sapiens BCG-regulated mRNA for MD-1 homologue, complete cds Length = 725 Score = 40.1 bits (20), Expect = 7.9 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 483 ctctctgtcaatcagctgcttctcctcc 510 |||||||||| ||||||||||||||||| Sbjct: 461 ctctctgtca-tcagctgcttctcctcc 435 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,515,930 Number of Sequences: 3902068 Number of extensions: 6515930 Number of successful extensions: 147944 Number of sequences better than 10.0: 124 Number of HSP's better than 10.0 without gapping: 130 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 144757 Number of HSP's gapped (non-prelim): 3174 length of query: 584 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 561 effective length of database: 17,143,297,704 effective search space: 9617390011944 effective search space used: 9617390011944 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
