| Clone Name | rbah60b06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_197608.1| Oryza sativa (japonica cultivar-group) putative CorA-like Mg2+ transporter protein (OSJNBa0001O14.11), mRNA Length = 1002 Score = 337 bits (170), Expect = 3e-89 Identities = 325/377 (86%) Strand = Plus / Minus Query: 359 atgttcatcgcaaatgccccaactatgaaggtattgatagctatgccaaacgatgcgatg 418 |||||||||||||| |||||| |||||||||| |||| ||||||||| || ||||| || Sbjct: 869 atgttcatcgcaaaagccccagctatgaaggtgttgacagctatgccgaaggatgcaata 810 Query: 419 gtcagcgtaagctgaagctggatcagttcatttcgctggttgtcgagttgaatgttgacg 478 ||||| |||||||||||||| || |||||||| ||||||||||| |||||||| ||||| Sbjct: 809 gtcagtgtaagctgaagctgaataagttcattacgctggttgtcaagttgaatattgaca 750 Query: 479 tagtcttctgtgtcatcaatatactctcggaccgataaaattctgttgcgaattccatcc 538 ||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct: 749 tagtcttctgtatcatcaatatactctcgaaccgacaaaattctgttgcgaattccatcc 690 Query: 539 agctgcatgaagtaggcctcaagcaacatctctaggtcttccacatcgttatccaaatat 598 | ||||||||||| |||||||||||||| |||||||||||||| || |||||||||| Sbjct: 689 aattgcatgaagtaagcctcaagcaacatttctaggtcttccacgtcattatccaaatgc 630 Query: 599 atactggtagcaatgctcacactacgtcgaaaactggagttcagcctcggcagacttgct 658 || || ||||| |||||||| || || |||||||| ||||| ||| | |||||||| | Sbjct: 629 atgcttgtagcgatgctcacgctgcgccgaaaactattgttcaacctggacagacttgtt 570 Query: 659 cctacaggaacaatgctattggaagcagcagacgtcattatagcttcaacctgctgattc 718 ||| ||||||||||||||||||||||||| || | |||| ||| ||||| ||||| || Sbjct: 569 cctccaggaacaatgctattggaagcagccgatgatattaaagcctcaacttgctggttt 510 Query: 719 tgngcttgcttccttgt 735 || |||||||||||| Sbjct: 509 tgtaattgcttccttgt 493 Score = 87.7 bits (44), Expect = 5e-14 Identities = 89/104 (85%) Strand = Plus / Minus Query: 230 ggaccgagcaacttcttccaccaggcgtaccctaacaaaatgacggagatcacaaagcag 289 |||||||||||||||||||||| ||| |||| ||| || | || | |||||| |||||| Sbjct: 998 ggaccgagcaacttcttccaccgggcataccataataagacgatgcagatcatgaagcag 939 Query: 290 cccgacgaggtacctcccacaaatggccaaaagaagctgccatc 333 ||||| ||||| || || |||||||||||||||||||| ||||| Sbjct: 938 cccgatgaggtgcccccaacaaatggccaaaagaagctaccatc 895
>dbj|AK069472.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019C12, full insert sequence Length = 1714 Score = 337 bits (170), Expect = 3e-89 Identities = 325/377 (86%) Strand = Plus / Minus Query: 359 atgttcatcgcaaatgccccaactatgaaggtattgatagctatgccaaacgatgcgatg 418 |||||||||||||| |||||| |||||||||| |||| ||||||||| || ||||| || Sbjct: 1406 atgttcatcgcaaaagccccagctatgaaggtgttgacagctatgccgaaggatgcaata 1347 Query: 419 gtcagcgtaagctgaagctggatcagttcatttcgctggttgtcgagttgaatgttgacg 478 ||||| |||||||||||||| || |||||||| ||||||||||| |||||||| ||||| Sbjct: 1346 gtcagtgtaagctgaagctgaataagttcattacgctggttgtcaagttgaatattgaca 1287 Query: 479 tagtcttctgtgtcatcaatatactctcggaccgataaaattctgttgcgaattccatcc 538 ||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct: 1286 tagtcttctgtatcatcaatatactctcgaaccgacaaaattctgttgcgaattccatcc 1227 Query: 539 agctgcatgaagtaggcctcaagcaacatctctaggtcttccacatcgttatccaaatat 598 | ||||||||||| |||||||||||||| |||||||||||||| || |||||||||| Sbjct: 1226 aattgcatgaagtaagcctcaagcaacatttctaggtcttccacgtcattatccaaatgc 1167 Query: 599 atactggtagcaatgctcacactacgtcgaaaactggagttcagcctcggcagacttgct 658 || || ||||| |||||||| || || |||||||| ||||| ||| | |||||||| | Sbjct: 1166 atgcttgtagcgatgctcacgctgcgccgaaaactattgttcaacctggacagacttgtt 1107 Query: 659 cctacaggaacaatgctattggaagcagcagacgtcattatagcttcaacctgctgattc 718 ||| ||||||||||||||||||||||||| || | |||| ||| ||||| ||||| || Sbjct: 1106 cctccaggaacaatgctattggaagcagccgatgatattaaagcctcaacttgctggttt 1047 Query: 719 tgngcttgcttccttgt 735 || |||||||||||| Sbjct: 1046 tgtaattgcttccttgt 1030 Score = 91.7 bits (46), Expect = 3e-15 Identities = 94/110 (85%) Strand = Plus / Minus Query: 224 gttcagggaccgagcaacttcttccaccaggcgtaccctaacaaaatgacggagatcaca 283 ||||| |||||||||||||||||||||| ||| |||| ||| || | || | |||||| Sbjct: 1541 gttcaaggaccgagcaacttcttccaccgggcataccataataagacgatgcagatcatg 1482 Query: 284 aagcagcccgacgaggtacctcccacaaatggccaaaagaagctgccatc 333 ||||||||||| ||||| || || |||||||||||||||||||| ||||| Sbjct: 1481 aagcagcccgatgaggtgcccccaacaaatggccaaaagaagctaccatc 1432
>gb|AC025783.10| Oryza sativa chromosome 10 BAC OSJNBa0001O14 genomic sequence, complete sequence Length = 178022 Score = 174 bits (88), Expect = 3e-40 Identities = 192/227 (84%) Strand = Plus / Plus Query: 509 accgataaaattctgttgcgaattccatccagctgcatgaagtaggcctcaagcaacatc 568 ||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct: 42925 accgacaaaattctgttgcgaattccatccaattgcatgaagtaagcctcaagcaacatt 42984 Query: 569 tctaggtcttccacatcgttatccaaatatatactggtagcaatgctcacactacgtcga 628 |||||||||||||| || |||||||||| || || ||||| |||||||| || || ||| Sbjct: 42985 tctaggtcttccacgtcattatccaaatgcatgcttgtagcgatgctcacgctgcgccga 43044 Query: 629 aaactggagttcagcctcggcagacttgctcctacaggaacaatgctattggaagcagca 688 ||||| ||||| ||| | |||||||| |||| ||||||||||||||||||||||||| Sbjct: 43045 aaactattgttcaacctggacagacttgttcctccaggaacaatgctattggaagcagcc 43104 Query: 689 gacgtcattatagcttcaacctgctgattctgngcttgcttccttgt 735 || | |||| ||| ||||| ||||| || || |||||||||||| Sbjct: 43105 gatgatattaaagcctcaacttgctggttttgtaattgcttccttgt 43151 Score = 168 bits (85), Expect = 2e-38 Identities = 133/149 (89%) Strand = Plus / Plus Query: 359 atgttcatcgcaaatgccccaactatgaaggtattgatagctatgccaaacgatgcgatg 418 |||||||||||||| |||||| |||||||||| |||| ||||||||| || ||||| || Sbjct: 42278 atgttcatcgcaaaagccccagctatgaaggtgttgacagctatgccgaaggatgcaata 42337 Query: 419 gtcagcgtaagctgaagctggatcagttcatttcgctggttgtcgagttgaatgttgacg 478 ||||| |||||||||||||| || |||||||| ||||||||||| |||||||| ||||| Sbjct: 42338 gtcagtgtaagctgaagctgaataagttcattacgctggttgtcaagttgaatattgaca 42397 Query: 479 tagtcttctgtgtcatcaatatactctcg 507 ||||||||||| ||||||||||||||||| Sbjct: 42398 tagtcttctgtatcatcaatatactctcg 42426 Score = 91.7 bits (46), Expect = 3e-15 Identities = 94/110 (85%) Strand = Plus / Plus Query: 224 gttcagggaccgagcaacttcttccaccaggcgtaccctaacaaaatgacggagatcaca 283 ||||| |||||||||||||||||||||| ||| |||| ||| || | || | |||||| Sbjct: 42143 gttcaaggaccgagcaacttcttccaccgggcataccataataagacgatgcagatcatg 42202 Query: 284 aagcagcccgacgaggtacctcccacaaatggccaaaagaagctgccatc 333 ||||||||||| ||||| || || |||||||||||||||||||| ||||| Sbjct: 42203 aagcagcccgatgaggtgcccccaacaaatggccaaaagaagctaccatc 42252
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 174 bits (88), Expect = 3e-40 Identities = 192/227 (84%) Strand = Plus / Plus Query: 509 accgataaaattctgttgcgaattccatccagctgcatgaagtaggcctcaagcaacatc 568 ||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct: 20780526 accgacaaaattctgttgcgaattccatccaattgcatgaagtaagcctcaagcaacatt 20780585 Query: 569 tctaggtcttccacatcgttatccaaatatatactggtagcaatgctcacactacgtcga 628 |||||||||||||| || |||||||||| || || ||||| |||||||| || || ||| Sbjct: 20780586 tctaggtcttccacgtcattatccaaatgcatgcttgtagcgatgctcacgctgcgccga 20780645 Query: 629 aaactggagttcagcctcggcagacttgctcctacaggaacaatgctattggaagcagca 688 ||||| ||||| ||| | |||||||| |||| ||||||||||||||||||||||||| Sbjct: 20780646 aaactattgttcaacctggacagacttgttcctccaggaacaatgctattggaagcagcc 20780705 Query: 689 gacgtcattatagcttcaacctgctgattctgngcttgcttccttgt 735 || | |||| ||| ||||| ||||| || || |||||||||||| Sbjct: 20780706 gatgatattaaagcctcaacttgctggttttgtaattgcttccttgt 20780752 Score = 168 bits (85), Expect = 2e-38 Identities = 133/149 (89%) Strand = Plus / Plus Query: 359 atgttcatcgcaaatgccccaactatgaaggtattgatagctatgccaaacgatgcgatg 418 |||||||||||||| |||||| |||||||||| |||| ||||||||| || ||||| || Sbjct: 20779879 atgttcatcgcaaaagccccagctatgaaggtgttgacagctatgccgaaggatgcaata 20779938 Query: 419 gtcagcgtaagctgaagctggatcagttcatttcgctggttgtcgagttgaatgttgacg 478 ||||| |||||||||||||| || |||||||| ||||||||||| |||||||| ||||| Sbjct: 20779939 gtcagtgtaagctgaagctgaataagttcattacgctggttgtcaagttgaatattgaca 20779998 Query: 479 tagtcttctgtgtcatcaatatactctcg 507 ||||||||||| ||||||||||||||||| Sbjct: 20779999 tagtcttctgtatcatcaatatactctcg 20780027 Score = 91.7 bits (46), Expect = 3e-15 Identities = 94/110 (85%) Strand = Plus / Plus Query: 224 gttcagggaccgagcaacttcttccaccaggcgtaccctaacaaaatgacggagatcaca 283 ||||| |||||||||||||||||||||| ||| |||| ||| || | || | |||||| Sbjct: 20779744 gttcaaggaccgagcaacttcttccaccgggcataccataataagacgatgcagatcatg 20779803 Query: 284 aagcagcccgacgaggtacctcccacaaatggccaaaagaagctgccatc 333 ||||||||||| ||||| || || |||||||||||||||||||| ||||| Sbjct: 20779804 aagcagcccgatgaggtgcccccaacaaatggccaaaagaagctaccatc 20779853
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 174 bits (88), Expect = 3e-40 Identities = 192/227 (84%) Strand = Plus / Plus Query: 509 accgataaaattctgttgcgaattccatccagctgcatgaagtaggcctcaagcaacatc 568 ||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct: 20791790 accgacaaaattctgttgcgaattccatccaattgcatgaagtaagcctcaagcaacatt 20791849 Query: 569 tctaggtcttccacatcgttatccaaatatatactggtagcaatgctcacactacgtcga 628 |||||||||||||| || |||||||||| || || ||||| |||||||| || || ||| Sbjct: 20791850 tctaggtcttccacgtcattatccaaatgcatgcttgtagcgatgctcacgctgcgccga 20791909 Query: 629 aaactggagttcagcctcggcagacttgctcctacaggaacaatgctattggaagcagca 688 ||||| ||||| ||| | |||||||| |||| ||||||||||||||||||||||||| Sbjct: 20791910 aaactattgttcaacctggacagacttgttcctccaggaacaatgctattggaagcagcc 20791969 Query: 689 gacgtcattatagcttcaacctgctgattctgngcttgcttccttgt 735 || | |||| ||| ||||| ||||| || || |||||||||||| Sbjct: 20791970 gatgatattaaagcctcaacttgctggttttgtaattgcttccttgt 20792016 Score = 168 bits (85), Expect = 2e-38 Identities = 133/149 (89%) Strand = Plus / Plus Query: 359 atgttcatcgcaaatgccccaactatgaaggtattgatagctatgccaaacgatgcgatg 418 |||||||||||||| |||||| |||||||||| |||| ||||||||| || ||||| || Sbjct: 20791143 atgttcatcgcaaaagccccagctatgaaggtgttgacagctatgccgaaggatgcaata 20791202 Query: 419 gtcagcgtaagctgaagctggatcagttcatttcgctggttgtcgagttgaatgttgacg 478 ||||| |||||||||||||| || |||||||| ||||||||||| |||||||| ||||| Sbjct: 20791203 gtcagtgtaagctgaagctgaataagttcattacgctggttgtcaagttgaatattgaca 20791262 Query: 479 tagtcttctgtgtcatcaatatactctcg 507 ||||||||||| ||||||||||||||||| Sbjct: 20791263 tagtcttctgtatcatcaatatactctcg 20791291 Score = 91.7 bits (46), Expect = 3e-15 Identities = 94/110 (85%) Strand = Plus / Plus Query: 224 gttcagggaccgagcaacttcttccaccaggcgtaccctaacaaaatgacggagatcaca 283 ||||| |||||||||||||||||||||| ||| |||| ||| || | || | |||||| Sbjct: 20791008 gttcaaggaccgagcaacttcttccaccgggcataccataataagacgatgcagatcatg 20791067 Query: 284 aagcagcccgacgaggtacctcccacaaatggccaaaagaagctgccatc 333 ||||||||||| ||||| || || |||||||||||||||||||| ||||| Sbjct: 20791068 aagcagcccgatgaggtgcccccaacaaatggccaaaagaagctaccatc 20791117
>dbj|AK069498.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022F21, full insert sequence Length = 1764 Score = 129 bits (65), Expect = 1e-26 Identities = 164/197 (83%) Strand = Plus / Minus Query: 359 atgttcatcgcaaatgccccaactatgaaggtattgatagctatgccaaacgatgcgatg 418 |||||||||||||| ||| || |||||||||| ||||| ||||||||||| ||||||||| Sbjct: 1386 atgttcatcgcaaaagccgcagctatgaaggtgttgatggctatgccaaaggatgcgatg 1327 Query: 419 gtcagcgtaagctgaagctggatcagttcatttcgctggttgtcgagttgaatgttgacg 478 |||| |||||||| ||| | |||||||| || | |||||| ||||| ||| ||| Sbjct: 1326 atcagggtaagctggagccctaggagttcattccgtttgttgtcaagttggatgctgata 1267 Query: 479 tagtcttctgtgtcatcaatatactctcggaccgataaaattctgttgcgaattccatcc 538 || |||||||||||| ||||||||| || ||| | ||||||||||||||||| ||||| Sbjct: 1266 taatcttctgtgtcaacaatatactgccgaaccaagaaaattctgttgcgaatcccatca 1207 Query: 539 agctgcatgaagtaggc 555 |||||| |||| ||||| Sbjct: 1206 agctgcttgaaataggc 1190
>gb|DQ294637.1| Rorippa sylvestris clone RS 101 microsatellite sequence Length = 583 Score = 123 bits (62), Expect = 9e-25 Identities = 143/170 (84%) Strand = Plus / Minus Query: 416 atggtcagcgtaagctgaagctggatcagttcatttcgctggttgtcgagttgaatgttg 475 ||||||||||| ||||| ||||||||||||||||| || || ||||| ||||| ||||| Sbjct: 325 atggtcagcgtcagctgcagctggatcagttcattacgttgattgtctagttgtatgttc 266 Query: 476 acgtagtcttctgtgtcatcaatatactctcggaccgataaaattctgttgcgaattcca 535 ||||||||||||||||| ||||| ||||| | ||||| | ||| |||| || ||||| Sbjct: 265 acgtagtcttctgtgtcgtcaatgtactccctcaccgaaagaatcttgttccgcattcct 206 Query: 536 tccagctgcatgaagtaggcctcaagcaacatctctaggtcttccacatc 585 ||||| ||||||||||| ||||| | ||||||||| || || |||||||| Sbjct: 205 tccagttgcatgaagtatgcctccaacaacatctccagatcctccacatc 156
>ref|NM_115759.2| Arabidopsis thaliana metal ion transporter AT3G58970 mRNA, complete cds Length = 1652 Score = 115 bits (58), Expect = 2e-22 Identities = 139/166 (83%) Strand = Plus / Minus Query: 405 caaacgatgcgatggtcagcgtaagctgaagctggatcagttcatttcgctggttgtcga 464 ||||||| || ||||||||||| ||||| |||||||||||||| ||||| || || || | Sbjct: 1334 caaacgaggctatggtcagcgtcagctgcagctggatcagttcgtttcgttgattatcca 1275 Query: 465 gttgaatgttgacgtagtcttctgtgtcatcaatatactctcggaccgataaaattctgt 524 |||||||||| ||||||||||||||||| ||||| ||||| | || | | ||| ||| Sbjct: 1274 gttgaatgttcacgtagtcttctgtgtcgtcaatgtactccctcactgtaagaatcttgt 1215 Query: 525 tgcgaattccatccagctgcatgaagtaggcctcaagcaacatctc 570 | || ||||||||||| ||||||||||| ||||| | ||||||||| Sbjct: 1214 tccgcattccatccagttgcatgaagtatgcctccaacaacatctc 1169
>emb|AL353032.1|ATT20N10 Arabidopsis thaliana DNA chromosome 3, BAC clone T20N10 Length = 90273 Score = 115 bits (58), Expect = 2e-22 Identities = 139/166 (83%) Strand = Plus / Plus Query: 405 caaacgatgcgatggtcagcgtaagctgaagctggatcagttcatttcgctggttgtcga 464 ||||||| || ||||||||||| ||||| |||||||||||||| ||||| || || || | Sbjct: 89687 caaacgaggctatggtcagcgtcagctgcagctggatcagttcgtttcgttgattatcca 89746 Query: 465 gttgaatgttgacgtagtcttctgtgtcatcaatatactctcggaccgataaaattctgt 524 |||||||||| ||||||||||||||||| ||||| ||||| | || | | ||| ||| Sbjct: 89747 gttgaatgttcacgtagtcttctgtgtcgtcaatgtactccctcactgtaagaatcttgt 89806 Query: 525 tgcgaattccatccagctgcatgaagtaggcctcaagcaacatctc 570 | || ||||||||||| ||||||||||| ||||| | ||||||||| Sbjct: 89807 tccgcattccatccagttgcatgaagtatgcctccaacaacatctc 89852
>emb|AL163527.1|ATF17J16 Arabidopsis thaliana DNA chromosome 3, BAC clone F17J16 Length = 89517 Score = 115 bits (58), Expect = 2e-22 Identities = 139/166 (83%) Strand = Plus / Plus Query: 405 caaacgatgcgatggtcagcgtaagctgaagctggatcagttcatttcgctggttgtcga 464 ||||||| || ||||||||||| ||||| |||||||||||||| ||||| || || || | Sbjct: 3063 caaacgaggctatggtcagcgtcagctgcagctggatcagttcgtttcgttgattatcca 3122 Query: 465 gttgaatgttgacgtagtcttctgtgtcatcaatatactctcggaccgataaaattctgt 524 |||||||||| ||||||||||||||||| ||||| ||||| | || | | ||| ||| Sbjct: 3123 gttgaatgttcacgtagtcttctgtgtcgtcaatgtactccctcactgtaagaatcttgt 3182 Query: 525 tgcgaattccatccagctgcatgaagtaggcctcaagcaacatctc 570 | || ||||||||||| ||||||||||| ||||| | ||||||||| Sbjct: 3183 tccgcattccatccagttgcatgaagtatgcctccaacaacatctc 3228
>gb|AY057613.1| Arabidopsis thaliana AT3g58970/F17J16_20 mRNA, complete cds Length = 1654 Score = 115 bits (58), Expect = 2e-22 Identities = 139/166 (83%) Strand = Plus / Minus Query: 405 caaacgatgcgatggtcagcgtaagctgaagctggatcagttcatttcgctggttgtcga 464 ||||||| || ||||||||||| ||||| |||||||||||||| ||||| || || || | Sbjct: 1317 caaacgaggctatggtcagcgtcagctgcagctggatcagttcgtttcgttgattatcca 1258 Query: 465 gttgaatgttgacgtagtcttctgtgtcatcaatatactctcggaccgataaaattctgt 524 |||||||||| ||||||||||||||||| ||||| ||||| | || | | ||| ||| Sbjct: 1257 gttgaatgttcacgtagtcttctgtgtcgtcaatgtactccctcactgtaagaatcttgt 1198 Query: 525 tgcgaattccatccagctgcatgaagtaggcctcaagcaacatctc 570 | || ||||||||||| ||||||||||| ||||| | ||||||||| Sbjct: 1197 tccgcattccatccagttgcatgaagtatgcctccaacaacatctc 1152
>gb|AY150289.1| Arabidopsis thaliana MRS2-4 (MRS2-4) mRNA, complete cds Length = 1699 Score = 115 bits (58), Expect = 2e-22 Identities = 139/166 (83%) Strand = Plus / Minus Query: 405 caaacgatgcgatggtcagcgtaagctgaagctggatcagttcatttcgctggttgtcga 464 ||||||| || ||||||||||| ||||| |||||||||||||| ||||| || || || | Sbjct: 1199 caaacgaggctatggtcagcgtcagctgcagctggatcagttcgtttcgttgattatcca 1140 Query: 465 gttgaatgttgacgtagtcttctgtgtcatcaatatactctcggaccgataaaattctgt 524 |||||||||| ||||||||||||||||| ||||| ||||| | || | | ||| ||| Sbjct: 1139 gttgaatgttcacgtagtcttctgtgtcgtcaatgtactccctcactgtaagaatcttgt 1080 Query: 525 tgcgaattccatccagctgcatgaagtaggcctcaagcaacatctc 570 | || ||||||||||| ||||||||||| ||||| | ||||||||| Sbjct: 1079 tccgcattccatccagttgcatgaagtatgcctccaacaacatctc 1034
>gb|BT002266.1| Arabidopsis thaliana At3g58970/F17J16_20 mRNA, complete cds Length = 1311 Score = 115 bits (58), Expect = 2e-22 Identities = 139/166 (83%) Strand = Plus / Minus Query: 405 caaacgatgcgatggtcagcgtaagctgaagctggatcagttcatttcgctggttgtcga 464 ||||||| || ||||||||||| ||||| |||||||||||||| ||||| || || || | Sbjct: 1138 caaacgaggctatggtcagcgtcagctgcagctggatcagttcgtttcgttgattatcca 1079 Query: 465 gttgaatgttgacgtagtcttctgtgtcatcaatatactctcggaccgataaaattctgt 524 |||||||||| ||||||||||||||||| ||||| ||||| | || | | ||| ||| Sbjct: 1078 gttgaatgttcacgtagtcttctgtgtcgtcaatgtactccctcactgtaagaatcttgt 1019 Query: 525 tgcgaattccatccagctgcatgaagtaggcctcaagcaacatctc 570 | || ||||||||||| ||||||||||| ||||| | ||||||||| Sbjct: 1018 tccgcattccatccagttgcatgaagtatgcctccaacaacatctc 973
>gb|AC118132.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0003A09, complete sequence Length = 167222 Score = 97.6 bits (49), Expect = 5e-17 Identities = 121/145 (83%) Strand = Plus / Plus Query: 359 atgttcatcgcaaatgccccaactatgaaggtattgatagctatgccaaacgatgcgatg 418 |||||||||||||| ||| || |||||||||| ||||| ||||||||||| ||||||||| Sbjct: 94898 atgttcatcgcaaaagccgcagctatgaaggtgttgatggctatgccaaaggatgcgatg 94957 Query: 419 gtcagcgtaagctgaagctggatcagttcatttcgctggttgtcgagttgaatgttgacg 478 |||| |||||||| ||| | |||||||| || | |||||| ||||| ||| ||| Sbjct: 94958 atcagggtaagctggagccctaggagttcattccgtttgttgtcaagttggatgctgata 95017 Query: 479 tagtcttctgtgtcatcaatatact 503 || |||||||||||| ||||||||| Sbjct: 95018 taatcttctgtgtcaacaatatact 95042 Score = 50.1 bits (25), Expect = 0.010 Identities = 37/41 (90%) Strand = Plus / Plus Query: 515 aaaattctgttgcgaattccatccagctgcatgaagtaggc 555 ||||||||||||||||| ||||| |||||| |||| ||||| Sbjct: 95177 aaaattctgttgcgaatcccatcaagctgcttgaaataggc 95217
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 97.6 bits (49), Expect = 5e-17 Identities = 121/145 (83%) Strand = Plus / Plus Query: 359 atgttcatcgcaaatgccccaactatgaaggtattgatagctatgccaaacgatgcgatg 418 |||||||||||||| ||| || |||||||||| ||||| ||||||||||| ||||||||| Sbjct: 2057475 atgttcatcgcaaaagccgcagctatgaaggtgttgatggctatgccaaaggatgcgatg 2057534 Query: 419 gtcagcgtaagctgaagctggatcagttcatttcgctggttgtcgagttgaatgttgacg 478 |||| |||||||| ||| | |||||||| || | |||||| ||||| ||| ||| Sbjct: 2057535 atcagggtaagctggagccctaggagttcattccgtttgttgtcaagttggatgctgata 2057594 Query: 479 tagtcttctgtgtcatcaatatact 503 || |||||||||||| ||||||||| Sbjct: 2057595 taatcttctgtgtcaacaatatact 2057619 Score = 50.1 bits (25), Expect = 0.010 Identities = 37/41 (90%) Strand = Plus / Plus Query: 515 aaaattctgttgcgaattccatccagctgcatgaagtaggc 555 ||||||||||||||||| ||||| |||||| |||| ||||| Sbjct: 2057754 aaaattctgttgcgaatcccatcaagctgcttgaaataggc 2057794 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 482 tcttctgtgtcatcaatatactctc 506 ||||||||||||||||| ||||||| Sbjct: 30162202 tcttctgtgtcatcaatgtactctc 30162226
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 97.6 bits (49), Expect = 5e-17 Identities = 121/145 (83%) Strand = Plus / Plus Query: 359 atgttcatcgcaaatgccccaactatgaaggtattgatagctatgccaaacgatgcgatg 418 |||||||||||||| ||| || |||||||||| ||||| ||||||||||| ||||||||| Sbjct: 2057487 atgttcatcgcaaaagccgcagctatgaaggtgttgatggctatgccaaaggatgcgatg 2057546 Query: 419 gtcagcgtaagctgaagctggatcagttcatttcgctggttgtcgagttgaatgttgacg 478 |||| |||||||| ||| | |||||||| || | |||||| ||||| ||| ||| Sbjct: 2057547 atcagggtaagctggagccctaggagttcattccgtttgttgtcaagttggatgctgata 2057606 Query: 479 tagtcttctgtgtcatcaatatact 503 || |||||||||||| ||||||||| Sbjct: 2057607 taatcttctgtgtcaacaatatact 2057631 Score = 50.1 bits (25), Expect = 0.010 Identities = 37/41 (90%) Strand = Plus / Plus Query: 515 aaaattctgttgcgaattccatccagctgcatgaagtaggc 555 ||||||||||||||||| ||||| |||||| |||| ||||| Sbjct: 2057766 aaaattctgttgcgaatcccatcaagctgcttgaaataggc 2057806 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 482 tcttctgtgtcatcaatatactctc 506 ||||||||||||||||| ||||||| Sbjct: 30253624 tcttctgtgtcatcaatgtactctc 30253648
>emb|BX823663.1|CNS0A6JB Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS63ZF09 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1621 Score = 89.7 bits (45), Expect = 1e-14 Identities = 114/137 (83%) Strand = Plus / Minus Query: 434 agctggatcagttcatttcgctggttgtcgagttgaatgttgacgtagtcttctgtgtca 493 |||||||||||||| ||||| || || || ||||||||||| ||||||||||||||||| Sbjct: 1265 agctggatcagttcgtttcgttgattatccagttgaatgttcacgtagtcttctgtgtcg 1206 Query: 494 tcaatatactctcggaccgataaaattctgttgcgaattccatccagctgcatgaagtag 553 ||||| ||||| | || | | ||| |||| || ||||||||||| ||||||||||| Sbjct: 1205 tcaatgtactccctcactgtaagaatcttgttccgcattccatccagttgcatgaagtat 1146 Query: 554 gcctcaagcaacatctc 570 ||||| | ||||||||| Sbjct: 1145 gcctccaacaacatctc 1129
>emb|BX823382.1|CNS0A6MI Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS30ZC02 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1646 Score = 89.7 bits (45), Expect = 1e-14 Identities = 114/137 (83%) Strand = Plus / Minus Query: 434 agctggatcagttcatttcgctggttgtcgagttgaatgttgacgtagtcttctgtgtca 493 |||||||||||||| ||||| || || || ||||||||||| ||||||||||||||||| Sbjct: 1304 agctggatcagttcgtttcgttgattatccagttgaatgttcacgtagtcttctgtgtcg 1245 Query: 494 tcaatatactctcggaccgataaaattctgttgcgaattccatccagctgcatgaagtag 553 ||||| ||||| | || | | ||| |||| || ||||||||||| ||||||||||| Sbjct: 1244 tcaatgtactccctcactgtaagaatcttgttccgcattccatccagttgcatgaagtat 1185 Query: 554 gcctcaagcaacatctc 570 ||||| | ||||||||| Sbjct: 1184 gcctccaacaacatctc 1168
>gb|DQ459071.1| Sorghum bicolor cultivar BTx623 clone BAC c0156b06, complete sequence Length = 112592 Score = 81.8 bits (41), Expect = 3e-12 Identities = 56/61 (91%) Strand = Plus / Minus Query: 517 aattctgttgcgaattccatccagctgcatgaagtaggcctcaagcaacatctctaggtc 576 ||||||||||||||||||||||||||||||||| || | ||||| |||||||||||||| Sbjct: 32108 aattctgttgcgaattccatccagctgcatgaaataagattcaagtaacatctctaggtc 32049 Query: 577 t 577 | Sbjct: 32048 t 32048 Score = 56.0 bits (28), Expect = 2e-04 Identities = 49/56 (87%) Strand = Plus / Minus Query: 456 ggttgtcgagttgaatgttgacgtagtcttctgtgtcatcaatatactctcggacc 511 ||||||| ||||| ||||||| |||||||||||||||| | ||||| |||||||| Sbjct: 32291 ggttgtcaagttggatgttgatgtagtcttctgtgtcaacgatatatcctcggacc 32236
>ref|NM_119000.2| Arabidopsis thaliana metal ion transporter AT4G28580 mRNA, complete cds Length = 1276 Score = 52.0 bits (26), Expect = 0.003 Identities = 47/54 (87%) Strand = Plus / Minus Query: 517 aattctgttgcgaattccatccagctgcatgaagtaggcctcaagcaacatctc 570 |||| |||| || ||||| || || ||||||||||| ||||||||||||||||| Sbjct: 945 aattttgttccgcattccctctagttgcatgaagtatgcctcaagcaacatctc 892
>gb|DQ446879.1| Arabidopsis thaliana clone pENTR221-At4g28580 magnesium transporter CorA-like family protein (At4g28580) mRNA, complete cds Length = 1227 Score = 52.0 bits (26), Expect = 0.003 Identities = 47/54 (87%) Strand = Plus / Minus Query: 517 aattctgttgcgaattccatccagctgcatgaagtaggcctcaagcaacatctc 570 |||| |||| || ||||| || || ||||||||||| ||||||||||||||||| Sbjct: 945 aattttgttccgcattccctctagttgcatgaagtatgcctcaagcaacatctc 892
>emb|AL161573.2|ATCHRIV69 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 69 Length = 197655 Score = 52.0 bits (26), Expect = 0.003 Identities = 47/54 (87%) Strand = Plus / Minus Query: 517 aattctgttgcgaattccatccagctgcatgaagtaggcctcaagcaacatctc 570 |||| |||| || ||||| || || ||||||||||| ||||||||||||||||| Sbjct: 45327 aattttgttccgcattccctctagttgcatgaagtatgcctcaagcaacatctc 45274
>gb|AY150291.1| Arabidopsis thaliana MRS2-6 (MRS2-6) mRNA, complete cds Length = 1276 Score = 52.0 bits (26), Expect = 0.003 Identities = 47/54 (87%) Strand = Plus / Minus Query: 517 aattctgttgcgaattccatccagctgcatgaagtaggcctcaagcaacatctc 570 |||| |||| || ||||| || || ||||||||||| ||||||||||||||||| Sbjct: 945 aattttgttccgcattccctctagttgcatgaagtatgcctcaagcaacatctc 892
>gb|AY150292.1| Arabidopsis thaliana MRS2-7 (MRS2-7) mRNA, complete cds Length = 1248 Score = 50.1 bits (25), Expect = 0.010 Identities = 40/45 (88%) Strand = Plus / Minus Query: 542 tgcatgaagtaggcctcaagcaacatctctaggtcttccacatcg 586 ||||||||||| |||||||||||||| || || ||||| |||||| Sbjct: 849 tgcatgaagtatgcctcaagcaacatttcaagctcttcaacatcg 805
>ref|NM_121006.3| Arabidopsis thaliana metal ion transporter AT5G09690 transcript variant AT5G09690.1 mRNA, complete cds Length = 1495 Score = 48.1 bits (24), Expect = 0.041 Identities = 39/44 (88%) Strand = Plus / Minus Query: 542 tgcatgaagtaggcctcaagcaacatctctaggtcttccacatc 585 ||||||||||| |||||||||||||| || || ||||| ||||| Sbjct: 1022 tgcatgaagtatgcctcaagcaacatttcaagctcttcaacatc 979
>ref|NM_180471.2| Arabidopsis thaliana metal ion transporter AT5G09690 transcript variant AT5G09690.2 mRNA, complete cds Length = 1455 Score = 48.1 bits (24), Expect = 0.041 Identities = 39/44 (88%) Strand = Plus / Minus Query: 542 tgcatgaagtaggcctcaagcaacatctctaggtcttccacatc 585 ||||||||||| |||||||||||||| || || ||||| ||||| Sbjct: 966 tgcatgaagtatgcctcaagcaacatttcaagctcttcaacatc 923
>ref|NM_203028.1| Arabidopsis thaliana metal ion transporter AT5G09690 transcript variant AT5G09690.3 mRNA, complete cds Length = 1438 Score = 48.1 bits (24), Expect = 0.041 Identities = 39/44 (88%) Strand = Plus / Minus Query: 542 tgcatgaagtaggcctcaagcaacatctctaggtcttccacatc 585 ||||||||||| |||||||||||||| || || ||||| ||||| Sbjct: 966 tgcatgaagtatgcctcaagcaacatttcaagctcttcaacatc 923
>ref|XM_469680.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1263 Score = 48.1 bits (24), Expect = 0.041 Identities = 39/44 (88%) Strand = Plus / Minus Query: 542 tgcatgaagtaggcctcaagcaacatctctaggtcttccacatc 585 ||||||||||| ||||| | |||||||||||| ||||| ||||| Sbjct: 812 tgcatgaagtatgcctccaacaacatctctagctcttcaacatc 769 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 482 tcttctgtgtcatcaatatactctc 506 ||||||||||||||||| ||||||| Sbjct: 872 tcttctgtgtcatcaatgtactctc 848
>gb|DQ408372.2| Arabidopsis thaliana Mg2+ transporter protein MGT7 (MGT7) mRNA, complete cds, alternatively spliced Length = 1161 Score = 48.1 bits (24), Expect = 0.041 Identities = 39/44 (88%) Strand = Plus / Minus Query: 542 tgcatgaagtaggcctcaagcaacatctctaggtcttccacatc 585 ||||||||||| |||||||||||||| || || ||||| ||||| Sbjct: 848 tgcatgaagtatgcctcaagcaacatttcaagctcttcaacatc 805
>emb|BX832680.1|CNS0A16V Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH8ZC02 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1491 Score = 48.1 bits (24), Expect = 0.041 Identities = 39/44 (88%) Strand = Plus / Minus Query: 542 tgcatgaagtaggcctcaagcaacatctctaggtcttccacatc 585 ||||||||||| |||||||||||||| || || ||||| ||||| Sbjct: 1023 tgcatgaagtatgcctcaagcaacatttcaagctcttcaacatc 980
>dbj|AK060249.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-004-A11, full insert sequence Length = 889 Score = 48.1 bits (24), Expect = 0.041 Identities = 39/44 (88%) Strand = Plus / Minus Query: 542 tgcatgaagtaggcctcaagcaacatctctaggtcttccacatc 585 ||||||||||| ||||| | |||||||||||| ||||| ||||| Sbjct: 439 tgcatgaagtatgcctccaacaacatctctagctcttcaacatc 396
>gb|AY110718.1| Zea mays CL34393_1 mRNA sequence Length = 823 Score = 48.1 bits (24), Expect = 0.041 Identities = 42/48 (87%) Strand = Plus / Minus Query: 458 ttgtcgagttgaatgttgacgtagtcttctgtgtcatcaatatactct 505 ||||| || |||||||||| | ||||||| ||||||||||| |||||| Sbjct: 586 ttgtccagctgaatgttgatgaagtcttcagtgtcatcaatgtactct 539
>ref|NM_125852.2| Arabidopsis thaliana metal ion transporter AT5G64560 transcript variant AT5G64560.2 mRNA, complete cds Length = 1299 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Minus Query: 478 gtagtcttctgtgtcatcaatatactc 504 |||||| |||||||||||||||||||| Sbjct: 1056 gtagtcctctgtgtcatcaatatactc 1030
>ref|NM_180938.2| Arabidopsis thaliana metal ion transporter AT5G64560 transcript variant AT5G64560.1 mRNA, complete cds Length = 1607 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Minus Query: 478 gtagtcttctgtgtcatcaatatactc 504 |||||| |||||||||||||||||||| Sbjct: 1102 gtagtcctctgtgtcatcaatatactc 1076
>gb|AY096449.1| Arabidopsis thaliana unknown protein (At5g64560) mRNA, complete cds Length = 1216 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Minus Query: 478 gtagtcttctgtgtcatcaatatactc 504 |||||| |||||||||||||||||||| Sbjct: 936 gtagtcctctgtgtcatcaatatactc 910
>gb|AY065449.1| Arabidopsis thaliana unknown protein (At5g64560) mRNA, complete cds Length = 1574 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Minus Query: 478 gtagtcttctgtgtcatcaatatactc 504 |||||| |||||||||||||||||||| Sbjct: 1052 gtagtcctctgtgtcatcaatatactc 1026
>emb|BX830196.1|CNS0A1F4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB65ZE05 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1411 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Minus Query: 478 gtagtcttctgtgtcatcaatatactc 504 |||||| |||||||||||||||||||| Sbjct: 1018 gtagtcctctgtgtcatcaatatactc 992
>gb|AY084382.1| Arabidopsis thaliana clone 106187 mRNA, complete sequence Length = 1478 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Minus Query: 478 gtagtcttctgtgtcatcaatatactc 504 |||||| |||||||||||||||||||| Sbjct: 1056 gtagtcctctgtgtcatcaatatactc 1030
>gb|AY150287.1| Arabidopsis thaliana MRS2-2 (MRS2-2) mRNA, complete cds Length = 1226 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Minus Query: 478 gtagtcttctgtgtcatcaatatactc 504 |||||| |||||||||||||||||||| Sbjct: 937 gtagtcctctgtgtcatcaatatactc 911
>dbj|AB010076.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUB3 Length = 82188 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Plus Query: 478 gtagtcttctgtgtcatcaatatactc 504 |||||| |||||||||||||||||||| Sbjct: 26705 gtagtcctctgtgtcatcaatatactc 26731
>emb|AJ297817.1|ATH297817 Arabidopsis thaliana mRNA for putative magnesium transporter (mrs2-2 gene) Length = 1194 Score = 46.1 bits (23), Expect = 0.16 Identities = 26/27 (96%) Strand = Plus / Minus Query: 478 gtagtcttctgtgtcatcaatatactc 504 |||||| |||||||||||||||||||| Sbjct: 951 gtagtcctctgtgtcatcaatatactc 925
>gb|AC096855.5| Oryza sativa chromosome 3 BAC OJ1365_D05 genomic sequence, complete sequence Length = 163972 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 482 tcttctgtgtcatcaatatactctc 506 ||||||||||||||||| ||||||| Sbjct: 61693 tcttctgtgtcatcaatgtactctc 61669
>gb|AC120035.6| Homo sapiens chromosome 8, clone RP11-1116K10, complete sequence Length = 151045 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 679 ggaagcagcagacgtcattat 699 ||||||||||||||||||||| Sbjct: 77256 ggaagcagcagacgtcattat 77276
>gb|AC015674.12| Homo sapiens chromosome 17, clone RP11-138C9, complete sequence Length = 187822 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 180 atgatgagctctctcaccatc 200 ||||||||||||||||||||| Sbjct: 32940 atgatgagctctctcaccatc 32920
>ref|XM_695027.1| PREDICTED: Danio rerio similar to T-cell lymphoma invasion and metastasis 2 isoform a (LOC571439), mRNA Length = 2202 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 117 ctgtccttcaagcccttgctc 137 ||||||||||||||||||||| Sbjct: 1486 ctgtccttcaagcccttgctc 1506
>gb|AC003665.1|AC003665 Homo sapiens chromosome 17, clone hCIT.211_P_7, complete sequence Length = 145528 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 180 atgatgagctctctcaccatc 200 ||||||||||||||||||||| Sbjct: 91757 atgatgagctctctcaccatc 91737 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,638,264 Number of Sequences: 3902068 Number of extensions: 5638264 Number of successful extensions: 94579 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 94295 Number of HSP's gapped (non-prelim): 280 length of query: 736 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 713 effective length of database: 17,143,297,704 effective search space: 12223171262952 effective search space used: 12223171262952 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)