| Clone Name | rbah60a10 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK069075.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007K10, full insert sequence Length = 1789 Score = 430 bits (217), Expect = e-117 Identities = 361/409 (88%) Strand = Plus / Minus Query: 331 ctcacttgtatagctgcttcagtcttcttgcagcttcaataatgttctctctgtggccaa 390 |||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct: 1444 ctcatttgtacagctgcttcagtcttctcgcagcttcaataatgttctctctgtgcccaa 1385 Query: 391 atgcactgaccctcacaaagccctcaccgccaggcccaaacccactgccaggagtagtaa 450 ||||||||||||| || ||||| ||||| || |||||||| || || ||||||||||||| Sbjct: 1384 atgcactgacccttacgaagccttcaccaccgggcccaaatccgctaccaggagtagtaa 1325 Query: 451 ccacatgcgccttctcaaggatctcagcaaagacatcccaagaattgcggccagggaagt 510 ||||||| ||||||||||| || || || ||||||||||||||||| ||||||||||||| Sbjct: 1324 ccacatgtgccttctcaagaatttcggcgaagacatcccaagaattacggccagggaagt 1265 Query: 511 gcacccacacatagggggcattcttggcaccatagacgttgaatccaagcgacgtaaacg 570 ||||||||||||| || |||||||||||||| ||||||||||||||||| || ||||| | Sbjct: 1264 gcacccacacatatggagcattcttggcaccgtagacgttgaatccaagtgatgtaaatg 1205 Query: 571 tgtcaacgacgattttagtgttctccttgtagaatccaacaacctcttgcatagccttta 630 ||||||| | |||||||| || ||||||||||| || ||||| || ||| ||||||| Sbjct: 1204 tgtcaacaataattttagtattttccttgtagaagccgacaacgtcactcatggccttta 1145 Query: 631 gaccctctgcagagaggcagcctaaaccaccggcctgagagattgtcgatgcgccattga 690 ||||||||| ||| || || |||||||||||||| ||||| || | ||||| ||||||| Sbjct: 1144 gaccctctggagatagacaacctaaaccaccggcttgagaaatgtttgatgcaccattga 1085 Query: 691 aggaagtgcagactatgcggttgaaatctttagcaactggatgcccatc 739 || |||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 1084 agcaagtgcagactatgcggttgaaatctttagcaacaggatgcccatc 1036
>gb|AY338235.1| Oryza sativa (japonica cultivar-group) putative aminotransferase AGD2 (AGD2) mRNA, complete cds Length = 1395 Score = 420 bits (212), Expect = e-114 Identities = 356/404 (88%) Strand = Plus / Minus Query: 336 ttgtatagctgcttcagtcttcttgcagcttcaataatgttctctctgtggccaaatgca 395 ||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct: 1391 ttgtacagctgcttcagtcttctcgcagcttcaataatgttctctctgtgcccaaatgca 1332 Query: 396 ctgaccctcacaaagccctcaccgccaggcccaaacccactgccaggagtagtaaccaca 455 |||||||| || ||||| ||||| || |||||||| || || |||||||||||||||||| Sbjct: 1331 ctgacccttacgaagccttcaccaccgggcccaaatccgctaccaggagtagtaaccaca 1272 Query: 456 tgcgccttctcaaggatctcagcaaagacatcccaagaattgcggccagggaagtgcacc 515 || ||||||||||| || || || ||||||||||||||||| |||||||||||||||||| Sbjct: 1271 tgtgccttctcaagaatttcggcgaagacatcccaagaattacggccagggaagtgcacc 1212 Query: 516 cacacatagggggcattcttggcaccatagacgttgaatccaagcgacgtaaacgtgtca 575 |||||||| || |||||||||||||| ||||||||||||||||| || ||||| |||||| Sbjct: 1211 cacacatatggagcattcttggcaccgtagacgttgaatccaagtgatgtaaatgtgtca 1152 Query: 576 acgacgattttagtgttctccttgtagaatccaacaacctcttgcatagcctttagaccc 635 || | |||||||| || ||||||||||| || ||||| || ||| ||||||| |||| Sbjct: 1151 acaataattttagtattttccttgtagaagccgacaacgtcactcatggcctttaaaccc 1092 Query: 636 tctgcagagaggcagcctaaaccaccggcctgagagattgtcgatgcgccattgaaggaa 695 |||| ||| || || |||||||||||||| ||||| || | ||||| ||||||||| || Sbjct: 1091 tctggagatagacaacctaaaccaccggcttgagaaatgtttgatgcaccattgaagcaa 1032 Query: 696 gtgcagactatgcggttgaaatctttagcaactggatgcccatc 739 |||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 1031 gtgcagactatgcggttgaaatctttagcaacaggatgcccatc 988
>gb|AY109180.1| Zea mays PCO110223 mRNA sequence Length = 1001 Score = 343 bits (173), Expect = 5e-91 Identities = 350/409 (85%) Strand = Plus / Minus Query: 331 ctcacttgtatagctgcttcagtcttcttgcagcttcaataatgttctctctgtggccaa 390 ||||||| || |||||||| | || ||||| |||||||| |||||||||||||| || | Sbjct: 747 ctcacttatacagctgctttaacctccttgcggcttcaatgatgttctctctgtgcccga 688 Query: 391 atgcactgaccctcacaaagccctcaccgccaggcccaaacccactgccaggagtagtaa 450 | || ||||||||||||||||| || || || || ||||| ||| ||||||||||||| | Sbjct: 687 acgcgctgaccctcacaaagccttcgccacccggtccaaatccagtgccaggagtagtga 628 Query: 451 ccacatgcgccttctcaaggatctcagcaaagacatcccaagaattgcggccagggaagt 510 |||||| |||||||| ||||||||||| || |||||||| ||||||||||||||||||| Sbjct: 627 ccacattggccttctccaggatctcagcgaacacatcccacgaattgcggccagggaagt 568 Query: 511 gcacccacacatagggggcattcttggcaccatagacgttgaatccaagcgacgtaaacg 570 ||||||| || || || || |||||||| ||||| ||||||||||| || || ||||| | Sbjct: 567 gcacccatacgtatggagcgttcttggcgccataaacgttgaatccgagtgatgtaaatg 508 Query: 571 tgtcaacgacgattttagtgttctccttgtagaatccaacaacctcttgcatagccttta 630 | ||||||| |||| |||||||||||||||||| |||||||| |||||||||||||||| Sbjct: 507 tctcaacgattatttcagtgttctccttgtagaagccaacaacatcttgcatagccttta 448 Query: 631 gaccctctgcagagaggcagcctaaaccaccggcctgagagattgtcgatgcgccattga 690 |||| |||| |||||||||| |||||||||| || || | || | ||||| ||||||| Sbjct: 447 gaccgtctggagagaggcaggctaaaccaccagcttgcgcaatgtttgatgcaccattga 388 Query: 691 aggaagtgcagactatgcggttgaaatctttagcaactggatgcccatc 739 || ||||||| |||||||| ||||||||||||||||||||||| ||||| Sbjct: 387 agcaagtgcaaactatgcgattgaaatctttagcaactggatgtccatc 339
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 315 bits (159), Expect = 1e-82 Identities = 252/283 (89%) Strand = Plus / Minus Query: 331 ctcacttgtatagctgcttcagtcttcttgcagcttcaataatgttctctctgtggccaa 390 |||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct: 10517901 ctcatttgtacagctgcttcagtcttctcgcagcttcaataatgttctctctgtgcccaa 10517842 Query: 391 atgcactgaccctcacaaagccctcaccgccaggcccaaacccactgccaggagtagtaa 450 ||||||||||||| || ||||| ||||| || |||||||| || || ||||||||||||| Sbjct: 10517841 atgcactgacccttacgaagccttcaccaccgggcccaaatccgctaccaggagtagtaa 10517782 Query: 451 ccacatgcgccttctcaaggatctcagcaaagacatcccaagaattgcggccagggaagt 510 ||||||| ||||||||||| || || || ||||||||||||||||| ||||||||||||| Sbjct: 10517781 ccacatgtgccttctcaagaatttcggcgaagacatcccaagaattacggccagggaagt 10517722 Query: 511 gcacccacacatagggggcattcttggcaccatagacgttgaatccaagcgacgtaaacg 570 ||||||||||||| || |||||||||||||| ||||||||||||||||| || ||||| | Sbjct: 10517721 gcacccacacatatggagcattcttggcaccgtagacgttgaatccaagtgatgtaaatg 10517662 Query: 571 tgtcaacgacgattttagtgttctccttgtagaatccaacaac 613 ||||||| | |||||||| || ||||||||||| || ||||| Sbjct: 10517661 tgtcaacaataattttagtattttccttgtagaagccgacaac 10517619 Score = 133 bits (67), Expect = 9e-28 Identities = 103/115 (89%) Strand = Plus / Minus Query: 625 cctttagaccctctgcagagaggcagcctaaaccaccggcctgagagattgtcgatgcgc 684 ||||||||||||||| ||| || || |||||||||||||| ||||| || | ||||| | Sbjct: 10517529 cctttagaccctctggagatagacaacctaaaccaccggcttgagaaatgtttgatgcac 10517470 Query: 685 cattgaaggaagtgcagactatgcggttgaaatctttagcaactggatgcccatc 739 |||||||| |||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 10517469 cattgaagcaagtgcagactatgcggttgaaatctttagcaacaggatgcccatc 10517415
>gb|AC118668.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0036G02, from chromosome 3, complete sequence Length = 153308 Score = 315 bits (159), Expect = 1e-82 Identities = 252/283 (89%) Strand = Plus / Minus Query: 331 ctcacttgtatagctgcttcagtcttcttgcagcttcaataatgttctctctgtggccaa 390 |||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct: 73714 ctcatttgtacagctgcttcagtcttctcgcagcttcaataatgttctctctgtgcccaa 73655 Query: 391 atgcactgaccctcacaaagccctcaccgccaggcccaaacccactgccaggagtagtaa 450 ||||||||||||| || ||||| ||||| || |||||||| || || ||||||||||||| Sbjct: 73654 atgcactgacccttacgaagccttcaccaccgggcccaaatccgctaccaggagtagtaa 73595 Query: 451 ccacatgcgccttctcaaggatctcagcaaagacatcccaagaattgcggccagggaagt 510 ||||||| ||||||||||| || || || ||||||||||||||||| ||||||||||||| Sbjct: 73594 ccacatgtgccttctcaagaatttcggcgaagacatcccaagaattacggccagggaagt 73535 Query: 511 gcacccacacatagggggcattcttggcaccatagacgttgaatccaagcgacgtaaacg 570 ||||||||||||| || |||||||||||||| ||||||||||||||||| || ||||| | Sbjct: 73534 gcacccacacatatggagcattcttggcaccgtagacgttgaatccaagtgatgtaaatg 73475 Query: 571 tgtcaacgacgattttagtgttctccttgtagaatccaacaac 613 ||||||| | |||||||| || ||||||||||| || ||||| Sbjct: 73474 tgtcaacaataattttagtattttccttgtagaagccgacaac 73432 Score = 133 bits (67), Expect = 9e-28 Identities = 103/115 (89%) Strand = Plus / Minus Query: 625 cctttagaccctctgcagagaggcagcctaaaccaccggcctgagagattgtcgatgcgc 684 ||||||||||||||| ||| || || |||||||||||||| ||||| || | ||||| | Sbjct: 73342 cctttagaccctctggagatagacaacctaaaccaccggcttgagaaatgtttgatgcac 73283 Query: 685 cattgaaggaagtgcagactatgcggttgaaatctttagcaactggatgcccatc 739 |||||||| |||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 73282 cattgaagcaagtgcagactatgcggttgaaatctttagcaacaggatgcccatc 73228
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 315 bits (159), Expect = 1e-82 Identities = 252/283 (89%) Strand = Plus / Minus Query: 331 ctcacttgtatagctgcttcagtcttcttgcagcttcaataatgttctctctgtggccaa 390 |||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| |||| Sbjct: 10516002 ctcatttgtacagctgcttcagtcttctcgcagcttcaataatgttctctctgtgcccaa 10515943 Query: 391 atgcactgaccctcacaaagccctcaccgccaggcccaaacccactgccaggagtagtaa 450 ||||||||||||| || ||||| ||||| || |||||||| || || ||||||||||||| Sbjct: 10515942 atgcactgacccttacgaagccttcaccaccgggcccaaatccgctaccaggagtagtaa 10515883 Query: 451 ccacatgcgccttctcaaggatctcagcaaagacatcccaagaattgcggccagggaagt 510 ||||||| ||||||||||| || || || ||||||||||||||||| ||||||||||||| Sbjct: 10515882 ccacatgtgccttctcaagaatttcggcgaagacatcccaagaattacggccagggaagt 10515823 Query: 511 gcacccacacatagggggcattcttggcaccatagacgttgaatccaagcgacgtaaacg 570 ||||||||||||| || |||||||||||||| ||||||||||||||||| || ||||| | Sbjct: 10515822 gcacccacacatatggagcattcttggcaccgtagacgttgaatccaagtgatgtaaatg 10515763 Query: 571 tgtcaacgacgattttagtgttctccttgtagaatccaacaac 613 ||||||| | |||||||| || ||||||||||| || ||||| Sbjct: 10515762 tgtcaacaataattttagtattttccttgtagaagccgacaac 10515720 Score = 133 bits (67), Expect = 9e-28 Identities = 103/115 (89%) Strand = Plus / Minus Query: 625 cctttagaccctctgcagagaggcagcctaaaccaccggcctgagagattgtcgatgcgc 684 ||||||||||||||| ||| || || |||||||||||||| ||||| || | ||||| | Sbjct: 10515630 cctttagaccctctggagatagacaacctaaaccaccggcttgagaaatgtttgatgcac 10515571 Query: 685 cattgaaggaagtgcagactatgcggttgaaatctttagcaactggatgcccatc 739 |||||||| |||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 10515570 cattgaagcaagtgcagactatgcggttgaaatctttagcaacaggatgcccatc 10515516
>gb|AC159872.12| Medicago truncatula clone mth2-29k12, complete sequence Length = 117971 Score = 95.6 bits (48), Expect = 2e-16 Identities = 117/140 (83%) Strand = Plus / Minus Query: 381 ctgtggccaaatgcactgaccctcacaaagccctcaccgccaggcccaaacccactgcca 440 ||||| ||||| ||||||||||| ||||| || ||||| ||||| ||||| ||||| ||| Sbjct: 113456 ctgtgaccaaaggcactgaccctgacaaaaccttcaccaccaggtccaaaaccactccca 113397 Query: 441 ggagtagtaaccacatgcgccttctcaaggatctcagcaaagacatcccaagaattgcgg 500 || || ||||||||||| | ||||||||| |||||| || |||||||| ||||| || Sbjct: 113396 ggtgttgtaaccacatgtgtcttctcaagaatctcactgaatacatcccatgaattttgg 113337 Query: 501 ccagggaagtgcacccacac 520 || |||||||| |||||||| Sbjct: 113336 cctgggaagtggacccacac 113317
>gb|AC124214.8| Medicago truncatula clone mth2-36a23, complete sequence Length = 118803 Score = 95.6 bits (48), Expect = 2e-16 Identities = 117/140 (83%) Strand = Plus / Plus Query: 381 ctgtggccaaatgcactgaccctcacaaagccctcaccgccaggcccaaacccactgcca 440 ||||| ||||| ||||||||||| ||||| || ||||| ||||| ||||| ||||| ||| Sbjct: 105452 ctgtgaccaaaggcactgaccctgacaaaaccttcaccaccaggtccaaaaccactccca 105511 Query: 441 ggagtagtaaccacatgcgccttctcaaggatctcagcaaagacatcccaagaattgcgg 500 || || ||||||||||| | ||||||||| |||||| || |||||||| ||||| || Sbjct: 105512 ggtgttgtaaccacatgtgtcttctcaagaatctcactgaatacatcccatgaattttgg 105571 Query: 501 ccagggaagtgcacccacac 520 || |||||||| |||||||| Sbjct: 105572 cctgggaagtggacccacac 105591
>ref|NM_119526.2| Arabidopsis thaliana AGD2 (ABERRANT GROWTH AND DEATH 2); transaminase AT4G33680 (AGD2) mRNA, complete cds Length = 1587 Score = 85.7 bits (43), Expect = 2e-13 Identities = 100/119 (84%) Strand = Plus / Minus Query: 372 atgttctctctgtggccaaatgcactgaccctcacaaagccctcaccgccaggcccaaac 431 |||||||||||||| ||||| |||||||| | || || || ||||| || || |||||| Sbjct: 1394 atgttctctctgtgaccaaaggcactgacacgaacgaacccttcaccccctggtccaaac 1335 Query: 432 ccactgccaggagtagtaaccacatgcgccttctcaaggatctcagcaaagacatccca 490 ||||| || ||||| ||||||||||| | |||||| || ||||||||||| |||||||| Sbjct: 1334 ccacttcctggagttgtaaccacatgagtcttctccagaatctcagcaaacacatccca 1276
>gb|AY518701.1| Arabidopsis thaliana aminotransferase AGD2 mRNA, complete cds Length = 1386 Score = 85.7 bits (43), Expect = 2e-13 Identities = 100/119 (84%) Strand = Plus / Minus Query: 372 atgttctctctgtggccaaatgcactgaccctcacaaagccctcaccgccaggcccaaac 431 |||||||||||||| ||||| |||||||| | || || || ||||| || || |||||| Sbjct: 1346 atgttctctctgtgaccaaaggcactgacacgaacgaacccttcaccccctggtccaaac 1287 Query: 432 ccactgccaggagtagtaaccacatgcgccttctcaaggatctcagcaaagacatccca 490 ||||| || ||||| ||||||||||| | |||||| || ||||||||||| |||||||| Sbjct: 1286 ccacttcctggagttgtaaccacatgagtcttctccagaatctcagcaaacacatccca 1228
>gb|AY117246.1| Arabidopsis thaliana unknown protein (At4g33680) mRNA, complete cds Length = 1417 Score = 85.7 bits (43), Expect = 2e-13 Identities = 100/119 (84%) Strand = Plus / Minus Query: 372 atgttctctctgtggccaaatgcactgaccctcacaaagccctcaccgccaggcccaaac 431 |||||||||||||| ||||| |||||||| | || || || ||||| || || |||||| Sbjct: 1346 atgttctctctgtgaccaaaggcactgacacgaacgaacccttcaccccctggtccaaac 1287 Query: 432 ccactgccaggagtagtaaccacatgcgccttctcaaggatctcagcaaagacatccca 490 ||||| || ||||| ||||||||||| | |||||| || ||||||||||| |||||||| Sbjct: 1286 ccacttcctggagttgtaaccacatgagtcttctccagaatctcagcaaacacatccca 1228
>gb|AY065256.1| Arabidopsis thaliana unknown protein (At4g33680) mRNA, complete cds Length = 1562 Score = 85.7 bits (43), Expect = 2e-13 Identities = 100/119 (84%) Strand = Plus / Minus Query: 372 atgttctctctgtggccaaatgcactgaccctcacaaagccctcaccgccaggcccaaac 431 |||||||||||||| ||||| |||||||| | || || || ||||| || || |||||| Sbjct: 1391 atgttctctctgtgaccaaaggcactgacacgaacgaacccttcaccccctggtccaaac 1332 Query: 432 ccactgccaggagtagtaaccacatgcgccttctcaaggatctcagcaaagacatccca 490 ||||| || ||||| ||||||||||| | |||||| || ||||||||||| |||||||| Sbjct: 1331 ccacttcctggagttgtaaccacatgagtcttctccagaatctcagcaaacacatccca 1273
>emb|AL161584.2|ATCHRIV80 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 80 Length = 192861 Score = 85.7 bits (43), Expect = 2e-13 Identities = 100/119 (84%) Strand = Plus / Plus Query: 372 atgttctctctgtggccaaatgcactgaccctcacaaagccctcaccgccaggcccaaac 431 |||||||||||||| ||||| |||||||| | || || || ||||| || || |||||| Sbjct: 5441 atgttctctctgtgaccaaaggcactgacacgaacgaacccttcaccccctggtccaaac 5500 Query: 432 ccactgccaggagtagtaaccacatgcgccttctcaaggatctcagcaaagacatccca 490 ||||| || ||||| ||||||||||| | |||||| || ||||||||||| |||||||| Sbjct: 5501 ccacttcctggagttgtaaccacatgagtcttctccagaatctcagcaaacacatccca 5559
>emb|AL031394.1|ATT16L1 Arabidopsis thaliana DNA chromosome 4, BAC clone T16L1 (ESSAII project) Length = 98124 Score = 85.7 bits (43), Expect = 2e-13 Identities = 100/119 (84%) Strand = Plus / Plus Query: 372 atgttctctctgtggccaaatgcactgaccctcacaaagccctcaccgccaggcccaaac 431 |||||||||||||| ||||| |||||||| | || || || ||||| || || |||||| Sbjct: 52659 atgttctctctgtgaccaaaggcactgacacgaacgaacccttcaccccctggtccaaac 52718 Query: 432 ccactgccaggagtagtaaccacatgcgccttctcaaggatctcagcaaagacatccca 490 ||||| || ||||| ||||||||||| | |||||| || ||||||||||| |||||||| Sbjct: 52719 ccacttcctggagttgtaaccacatgagtcttctccagaatctcagcaaacacatccca 52777
>gb|AY056423.1| Arabidopsis thaliana AT4g33680/T16L1_170 mRNA, complete cds Length = 1589 Score = 85.7 bits (43), Expect = 2e-13 Identities = 100/119 (84%) Strand = Plus / Minus Query: 372 atgttctctctgtggccaaatgcactgaccctcacaaagccctcaccgccaggcccaaac 431 |||||||||||||| ||||| |||||||| | || || || ||||| || || |||||| Sbjct: 1397 atgttctctctgtgaccaaaggcactgacacgaacgaacccttcaccccctggtccaaac 1338 Query: 432 ccactgccaggagtagtaaccacatgcgccttctcaaggatctcagcaaagacatccca 490 ||||| || ||||| ||||||||||| | |||||| || ||||||||||| |||||||| Sbjct: 1337 ccacttcctggagttgtaaccacatgagtcttctccagaatctcagcaaacacatccca 1279
>gb|BT013469.1| Lycopersicon esculentum clone 132129F, mRNA sequence Length = 1711 Score = 83.8 bits (42), Expect = 8e-13 Identities = 96/114 (84%) Strand = Plus / Minus Query: 362 agcttcaataatgttctctctgtggccaaatgcactgaccctcacaaagccctcaccgcc 421 ||||||||| | ||| || ||||| ||||| ||||| || |||||||| || ||||| || Sbjct: 1453 agcttcaatgacgttttccctgtgcccaaaagcactcactctcacaaaaccttcaccacc 1394 Query: 422 aggcccaaacccactgccaggagtagtaaccacatgcgccttctcaaggatctc 475 |||||| || |||||||| ||||||||||| ||||| | ||||||||| ||||| Sbjct: 1393 aggcccgaaaccactgcctggagtagtaacgacatgagtcttctcaagtatctc 1340
>gb|DQ226577.1| Boechera divaricarpa isolate SLW-2-C10 mRNA sequence Length = 373 Score = 77.8 bits (39), Expect = 5e-11 Identities = 99/119 (83%) Strand = Plus / Plus Query: 372 atgttctctctgtggccaaatgcactgaccctcacaaagccctcaccgccaggcccaaac 431 |||||||||||||| ||||| ||||| || | ||||| || ||||| || || |||||| Sbjct: 193 atgttctctctgtgaccaaaggcactaacacgaacaaacccttcaccacctggtccaaac 252 Query: 432 ccactgccaggagtagtaaccacatgcgccttctcaaggatctcagcaaagacatccca 490 ||||| || ||||| ||||||||||| | |||||| || |||||||||| |||||||| Sbjct: 253 ccacttcctggagttgtaaccacatgagtcttctctagaatctcagcaagcacatccca 311
>dbj|AP006424.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT13E04, TM0314, complete sequence Length = 126349 Score = 48.1 bits (24), Expect = 0.042 Identities = 33/36 (91%) Strand = Plus / Minus Query: 461 cttctcaaggatctcagcaaagacatcccaagaatt 496 ||||||||| || ||||| ||||||||||||||||| Sbjct: 52144 cttctcaagaatttcagcgaagacatcccaagaatt 52109 Score = 44.1 bits (22), Expect = 0.65 Identities = 52/62 (83%) Strand = Plus / Minus Query: 657 ccaccggcctgagagattgtcgatgcgccattgaaggaagtgcagactatgcggttgaaa 716 ||||||||||||| || | ||||| ||||||||| | ||||| | ||||||||||||| Sbjct: 51801 ccaccggcctgagctatgttggatgctccattgaagcatgtgcacattatgcggttgaaa 51742 Query: 717 tc 718 || Sbjct: 51741 tc 51740
>gb|AC116758.11| Mus musculus chromosome 8, clone RP23-383A10, complete sequence Length = 190294 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 11 aatagatatatagatatatagg 32 |||||||||||||||||||||| Sbjct: 137751 aatagatatatagatatatagg 137772
>gb|AC157693.2| Xenopus tropicalis clone ISB1-181F7, complete sequence Length = 103707 Score = 44.1 bits (22), Expect = 0.65 Identities = 25/26 (96%) Strand = Plus / Minus Query: 12 atagatatatagatatataggagaga 37 ||||||||||||||||||| |||||| Sbjct: 67443 atagatatatagatatataagagaga 67418
>gb|AC137901.7| Mus musculus chromosome 6, clone RP23-81E17, complete sequence Length = 158419 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Minus Query: 464 ctcaaggatctcagcaaagaca 485 |||||||||||||||||||||| Sbjct: 56764 ctcaaggatctcagcaaagaca 56743
>gb|AC130841.4| Mus musculus BAC clone RP24-445L16 from chromosome 8, complete sequence Length = 174384 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 11 aatagatatatagatatatagg 32 |||||||||||||||||||||| Sbjct: 37512 aatagatatatagatatatagg 37533
>gb|AC164563.4| Mus musculus BAC clone RP23-130D15 from chromosome 6, complete sequence Length = 202948 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 464 ctcaaggatctcagcaaagaca 485 |||||||||||||||||||||| Sbjct: 69664 ctcaaggatctcagcaaagaca 69685
>emb|CR954167.21| Zebrafish DNA sequence from clone CH211-122N14 in linkage group 8, complete sequence Length = 160594 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 12 atagatatatagatatatagga 33 |||||||||||||||||||||| Sbjct: 5730 atagatatatagatatatagga 5751
>gb|AF088189.1|AF088189 Mus musculus CD4 antigen (Cd4) gene, partial sequence Length = 23108 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Minus Query: 464 ctcaaggatctcagcaaagaca 485 |||||||||||||||||||||| Sbjct: 9379 ctcaaggatctcagcaaagaca 9358
>dbj|AP000763.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-809N8, complete sequence Length = 189920 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Plus Query: 12 atagatatatagatatatagga 33 |||||||||||||||||||||| Sbjct: 106220 atagatatatagatatatagga 106241
>gb|AC002397.1|AC002397 Mouse chromosome 6 BAC-284H12 (Research Genetics mouse BAC library) complete sequence Length = 227538 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Minus Query: 464 ctcaaggatctcagcaaagaca 485 |||||||||||||||||||||| Sbjct: 3468 ctcaaggatctcagcaaagaca 3447
>gb|AC142254.4| Mus musculus BAC clone RP24-545G7 from 6, complete sequence Length = 159818 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Minus Query: 464 ctcaaggatctcagcaaagaca 485 |||||||||||||||||||||| Sbjct: 40643 ctcaaggatctcagcaaagaca 40622
>gb|AY842970.1| Entamoeba dispar strain SAW 760 array unit [RT], between tRNA-ThrAGT and tRNA-ArgCCT genomic sequence Length = 337 Score = 44.1 bits (22), Expect = 0.65 Identities = 22/22 (100%) Strand = Plus / Minus Query: 10 taatagatatatagatatatag 31 |||||||||||||||||||||| Sbjct: 231 taatagatatatagatatatag 210
>ref|NM_126187.2| Arabidopsis thaliana unknown protein AT2G01260 transcript variant AT2G01260.1 mRNA, complete cds Length = 1659 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 atagatatatagatatatagg 32 ||||||||||||||||||||| Sbjct: 252 atagatatatagatatatagg 272
>ref|NM_201662.1| Arabidopsis thaliana unknown protein AT2G01260 transcript variant AT2G01260.2 mRNA, complete cds Length = 1937 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 atagatatatagatatatagg 32 ||||||||||||||||||||| Sbjct: 252 atagatatatagatatatagg 272
>ref|NM_001035858.1| Arabidopsis thaliana unknown protein AT2G01260 transcript variant AT2G01260.3 mRNA, complete cds Length = 1573 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 atagatatatagatatatagg 32 ||||||||||||||||||||| Sbjct: 252 atagatatatagatatatagg 272
>gb|AC102908.11| Mus musculus chromosome 16, clone RP24-288K2, complete sequence Length = 174803 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 11 aatagatatatagatatatag 31 ||||||||||||||||||||| Sbjct: 126823 aatagatatatagatatatag 126843
>gb|AC166340.4| Mus musculus chromosome 1, clone RP24-234I17, complete sequence Length = 172530 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 11 aatagatatatagatatatag 31 ||||||||||||||||||||| Sbjct: 120305 aatagatatatagatatatag 120285
>gb|AC130666.9| Mus musculus chromosome 5, clone RP24-79O7, complete sequence Length = 172995 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 atagatatatagatatatagg 32 ||||||||||||||||||||| Sbjct: 85551 atagatatatagatatatagg 85531
>gb|AC124614.11| Mus musculus chromosome 10, clone RP24-417L12, complete sequence Length = 173306 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 279 ggctggctccctccccagcaa 299 ||||||||||||||||||||| Sbjct: 80552 ggctggctccctccccagcaa 80572
>gb|AC135962.4| Mus musculus BAC clone RP23-342H15 from chromosome 16, complete sequence Length = 202525 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 11 aatagatatatagatatatag 31 ||||||||||||||||||||| Sbjct: 71143 aatagatatatagatatatag 71123
>gb|BC065126.1| Mus musculus T-cell lymphoma invasion and metastasis 1, mRNA (cDNA clone MGC:86168 IMAGE:30534934), complete cds Length = 5225 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 11 aatagatatatagatatatag 31 ||||||||||||||||||||| Sbjct: 4603 aatagatatatagatatatag 4583
>gb|BC040748.1| Mus musculus T-cell lymphoma invasion and metastasis 1, mRNA (cDNA clone IMAGE:4035894), partial cds Length = 3030 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 11 aatagatatatagatatatag 31 ||||||||||||||||||||| Sbjct: 2410 aatagatatatagatatatag 2390
>gb|AC139569.3| Mus musculus BAC clone RP24-340F13 from chromosome 14, complete sequence Length = 173736 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 279 ggctggctccctccccagcaa 299 ||||||||||||||||||||| Sbjct: 148790 ggctggctccctccccagcaa 148810
>gb|AC108117.2| Homo sapiens chromosome 5 clone RP11-348K15, complete sequence Length = 159501 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 275 tattggctggctccctccccagcaa 299 |||||||||||| |||||||||||| Sbjct: 55366 tattggctggctgcctccccagcaa 55390
>gb|AC122439.4| Mus musculus BAC clone RP24-222B4 from chromosome 3, complete sequence Length = 159703 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 cagttcccagaagcccaggag 242 ||||||||||||||||||||| Sbjct: 125932 cagttcccagaagcccaggag 125952
>gb|AC093693.4| Homo sapiens BAC clone RP11-761E14 from 7, complete sequence Length = 47886 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 10 taatagatatatagatatata 30 ||||||||||||||||||||| Sbjct: 32605 taatagatatatagatatata 32625
>gb|AC145985.2| Pan troglodytes BAC clone RP43-17I24 from 7, complete sequence Length = 162953 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 10 taatagatatatagatatata 30 ||||||||||||||||||||| Sbjct: 63905 taatagatatatagatatata 63885
>gb|AC162183.4| Mus musculus BAC clone RP23-27I10 from chromosome 14, complete sequence Length = 225212 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 279 ggctggctccctccccagcaa 299 ||||||||||||||||||||| Sbjct: 31613 ggctggctccctccccagcaa 31633
>emb|AL663086.6| Mouse DNA sequence from clone RP23-64N1 on chromosome 11, complete sequence Length = 161810 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 atagatatatagatatatagg 32 ||||||||||||||||||||| Sbjct: 80113 atagatatatagatatatagg 80133
>gb|AC122700.2| Homo sapiens chromosome 5 clone CTD-3136I2, complete sequence Length = 118238 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 275 tattggctggctccctccccagcaa 299 |||||||||||| |||||||||||| Sbjct: 5408 tattggctggctgcctccccagcaa 5384
>gb|AC091694.9| Mus musculus Strain C57BL6/J chromosome 11 BAC, RP23-316F3, Complete Sequence, complete sequence Length = 213119 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 atagatatatagatatatagg 32 ||||||||||||||||||||| Sbjct: 175352 atagatatatagatatatagg 175372
>gb|AC006200.3| Arabidopsis thaliana chromosome 2 clone F10A8 map rga, complete sequence Length = 94029 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 atagatatatagatatatagg 32 ||||||||||||||||||||| Sbjct: 47148 atagatatatagatatatagg 47128
>dbj|AK147392.1| Mus musculus cDNA, RIKEN full-length enriched library, clone:M5C1028H05 product:T-cell lymphoma invasion and metastasis 1, full insert sequence Length = 7279 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 11 aatagatatatagatatatag 31 ||||||||||||||||||||| Sbjct: 6657 aatagatatatagatatatag 6637
>ref|NM_009384.1| Mus musculus T-cell lymphoma invasion and metastasis 1 (Tiam1), mRNA Length = 7292 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 11 aatagatatatagatatatag 31 ||||||||||||||||||||| Sbjct: 6693 aatagatatatagatatatag 6673
>gb|L80120.1|DRO56DC4Z Drosophila melanogaster (subclone D56 2_e10 from P1 DS04217) DNA sequence Length = 3279 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 8 tttaatagatatatagatata 28 ||||||||||||||||||||| Sbjct: 2197 tttaatagatatatagatata 2217
>gb|AY058661.1| Drosophila melanogaster LD36721 full length cDNA Length = 1705 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 6 tttttaatagatatatagatatata 30 ||||||||||||||||| ||||||| Sbjct: 1688 tttttaatagatatatatatatata 1664
>gb|AC161454.3| Mus musculus BAC clone RP23-332F10 from chromosome 3, complete sequence Length = 228486 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 cagttcccagaagcccaggag 242 ||||||||||||||||||||| Sbjct: 141551 cagttcccagaagcccaggag 141571
>emb|BX649547.7| Zebrafish DNA sequence from clone DKEY-19E10 in linkage group 3, complete sequence Length = 237569 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 7 ttttaatagatatatagatat 27 ||||||||||||||||||||| Sbjct: 228052 ttttaatagatatatagatat 228072
>dbj|AK079591.1| Mus musculus adult male spinal cord cDNA, RIKEN full-length enriched library, clone:A330040F01 product:unclassifiable, full insert sequence Length = 2264 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 11 aatagatatatagatatatag 31 ||||||||||||||||||||| Sbjct: 457 aatagatatatagatatatag 477
>gb|AC007467.4|AC007467 Drosophila melanogaster, chromosome 2L, region 38E-38F, BAC clone BACR07D17, complete sequence Length = 173422 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 8 tttaatagatatatagatata 28 ||||||||||||||||||||| Sbjct: 29185 tttaatagatatatagatata 29165
>emb|BX820932.1|CNS0A9OM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH82ZG05 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1601 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 atagatatatagatatatagg 32 ||||||||||||||||||||| Sbjct: 247 atagatatatagatatatagg 267
>emb|BX820926.1|CNS0A9MW Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH82ZD01 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1581 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 atagatatatagatatatagg 32 ||||||||||||||||||||| Sbjct: 231 atagatatatagatatatagg 251
>emb|BX820744.1|CNS0A9NK Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH65ZG03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1865 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 atagatatatagatatatagg 32 ||||||||||||||||||||| Sbjct: 247 atagatatatagatatatagg 267
>emb|BX820505.1|CNS0A9O2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH41ZE08 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1570 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 atagatatatagatatatagg 32 ||||||||||||||||||||| Sbjct: 239 atagatatatagatatatagg 259
>gb|AC157494.2| Mus musculus BAC clone RP23-2F1 from chromosome 12, complete sequence Length = 189996 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 11 aatagatatatagatatatag 31 ||||||||||||||||||||| Sbjct: 163737 aatagatatatagatatatag 163717
>gb|AY089198.1| Arabidopsis thaliana clone 8949 mRNA, complete sequence Length = 1591 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 atagatatatagatatatagg 32 ||||||||||||||||||||| Sbjct: 247 atagatatatagatatatagg 267
>gb|AC116162.5| Homo sapiens chromosome 15, clone RP11-268L17, complete sequence Length = 160580 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 atagatatatagatatatagg 32 ||||||||||||||||||||| Sbjct: 84640 atagatatatagatatatagg 84620
>gb|AE003668.5| Drosophila melanogaster chromosome 2L, section 77 of 83 of the complete sequence Length = 270158 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 8 tttaatagatatatagatata 28 ||||||||||||||||||||| Sbjct: 18999 tttaatagatatatagatata 18979
>emb|CT025577.11| Mouse DNA sequence from clone RP24-172I18 on chromosome 12, complete sequence Length = 143997 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 11 aatagatatatagatatatag 31 ||||||||||||||||||||| Sbjct: 132491 aatagatatatagatatatag 132511
>emb|AL512308.19| Human DNA sequence from clone RP11-164H16 on chromosome 6, complete sequence Length = 107455 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 11 aatagatatatagatatatag 31 ||||||||||||||||||||| Sbjct: 93208 aatagatatatagatatatag 93188
>gb|AC004759.1|AC004759 Drosophila melanogaster DNA sequence (P1s DS04217 (D56) and DS00582 (D85)), complete sequence Length = 142799 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 8 tttaatagatatatagatata 28 ||||||||||||||||||||| Sbjct: 60350 tttaatagatatatagatata 60370
>gb|AC087840.16| Mus musculus strain C57BL/6J chromosome 16 clone rp23-240k10, complete sequence Length = 190761 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 11 aatagatatatagatatatag 31 ||||||||||||||||||||| Sbjct: 78395 aatagatatatagatatatag 78415
>gb|AC158169.2| Mus musculus BAC clone RP23-210A16 from chromosome 5, complete sequence Length = 223006 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 11 aatagatatatagatatatag 31 ||||||||||||||||||||| Sbjct: 131461 aatagatatatagatatatag 131481
>emb|AL645542.13| Mouse DNA sequence from clone RP23-468A19 on chromosome 11, complete sequence Length = 166100 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 12 atagatatatagatatatagg 32 ||||||||||||||||||||| Sbjct: 54398 atagatatatagatatatagg 54378
>emb|AL606756.17| Mouse DNA sequence from clone RP23-265O19 on chromosome 3, complete sequence Length = 193976 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 11 aatagatatatagatatatag 31 ||||||||||||||||||||| Sbjct: 132336 aatagatatatagatatatag 132356
>gb|U05245.1|MMU05245 Mus musculus BALB/c invasion inducing protein (Tiam-1) mRNA, complete cds Length = 7292 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 11 aatagatatatagatatatag 31 ||||||||||||||||||||| Sbjct: 6693 aatagatatatagatatatag 6673 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,385,535 Number of Sequences: 3902068 Number of extensions: 7385535 Number of successful extensions: 175480 Number of sequences better than 10.0: 74 Number of HSP's better than 10.0 without gapping: 74 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 174846 Number of HSP's gapped (non-prelim): 634 length of query: 740 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 717 effective length of database: 17,143,297,704 effective search space: 12291744453768 effective search space used: 12291744453768 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)