| Clone Name | rbah60a02 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | HAP1_HAEIN (P44596) Adhesion and penetration protein precursor (... | 34 | 0.30 | 2 | STE3_YEAST (P06783) Pheromone a factor receptor | 31 | 2.6 | 3 | MDH2_AQUAE (O67581) Malate dehydrogenase 2 (EC 1.1.1.37) | 30 | 4.4 | 4 | BORG4_MOUSE (Q9JM96) Cdc42 effector protein 4 (Binder of Rho GTP... | 29 | 7.5 |
|---|
>HAP1_HAEIN (P44596) Adhesion and penetration protein precursor (EC 3.4.21.-)| Length = 1409 Score = 33.9 bits (76), Expect = 0.30 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 2/81 (2%) Frame = +1 Query: 73 GVQPSCLSTDC-RGEKAAMELCLTIVLRSTR*TNYFP*KWAQ-KINNRNRATVKVINALA 246 GV P+ +T C R + + C T+ L T+ N P IN N ATV + Sbjct: 705 GVVPNXQNTICTRSDWTGLTTCKTVNLTDTKVINSIPITQINGSINLTNNATVNIHGLAK 764 Query: 247 TRTHVTAPDHSSSSMKQNSEE 309 +VT DHS ++ N+ + Sbjct: 765 LNGNVTLIDHSQFTLSNNATQ 785
>STE3_YEAST (P06783) Pheromone a factor receptor| Length = 470 Score = 30.8 bits (68), Expect = 2.6 Identities = 11/27 (40%), Positives = 19/27 (70%) Frame = +3 Query: 12 EIFNYCLSRFSSALNLLTAAWRTTVLF 92 ++F Y ++R++ NLL+ W TTVL+ Sbjct: 135 QVFRYGIARYNGCQNLLSPTWITTVLY 161
>MDH2_AQUAE (O67581) Malate dehydrogenase 2 (EC 1.1.1.37)| Length = 334 Score = 30.0 bits (66), Expect = 4.4 Identities = 11/36 (30%), Positives = 24/36 (66%) Frame = -3 Query: 533 REEILATSVKDFKEFADAVETINDNGVVVAVASPDD 426 RE++L ++K K+F DA++ + +++ V++P D Sbjct: 106 REDLLYENLKILKKFTDAIKEYAKDSIIIVVSNPVD 141
>BORG4_MOUSE (Q9JM96) Cdc42 effector protein 4 (Binder of Rho GTPases 4)| Length = 349 Score = 29.3 bits (64), Expect = 7.5 Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 5/70 (7%) Frame = -3 Query: 470 INDNGVVVAVASPDDVEAANKE-----KSLFSDIKKCL*GLSIPIPAGFQSGPAPSRRGS 306 + D+G V SP + SL S L S + AP R+ Sbjct: 274 VEDDGWAVVAPSPSSARSVGSHTTRDSSSLSSYTSGVLEERSPAFRGPDRVAAAPPRQPD 333 Query: 305 SEFCFIDEEE 276 EFCF+DEEE Sbjct: 334 KEFCFMDEEE 343 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,033,284 Number of Sequences: 219361 Number of extensions: 1433432 Number of successful extensions: 3439 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 3322 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3437 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4315578075 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)