ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah59o11 |
|---|---|
| Clone Library Name | barley_pub |
>PSBS_SOLSG (Q9FPP4) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 276 Score = 77.4 bits (189), Expect = 8e-15 Identities = 40/61 (65%), Positives = 44/61 (72%) Frame = -3 Query: 308 GIAFSIIGEIITGKGALAQLNIETGVPISEIXPXXXXXXXXXXXXXXNPGTGKFISGEDD 129 GIAFSIIGEIITGKGALAQLN ETGVPI+EI P NPGTGKFI+ E++ Sbjct: 216 GIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINPGTGKFITDEEE 275 Query: 128 D 126 D Sbjct: 276 D 276 Score = 48.5 bits (114), Expect = 4e-06 Identities = 22/33 (66%), Positives = 26/33 (78%) Frame = -3 Query: 308 GIAFSIIGEIITGKGALAQLNIETGVPISEIXP 210 G A S++GE ITGKG LAQLN+ETG+PI E P Sbjct: 110 GFAASLLGEAITGKGILAQLNLETGIPIYEAEP 142
>PSBS_LYCES (P54773) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 276 Score = 77.4 bits (189), Expect = 8e-15 Identities = 40/61 (65%), Positives = 44/61 (72%) Frame = -3 Query: 308 GIAFSIIGEIITGKGALAQLNIETGVPISEIXPXXXXXXXXXXXXXXNPGTGKFISGEDD 129 GIAFSIIGEIITGKGALAQLN ETGVPI+EI P NPGTGKFI+ E++ Sbjct: 216 GIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINPGTGKFITDEEE 275 Query: 128 D 126 D Sbjct: 276 D 276 Score = 48.5 bits (114), Expect = 4e-06 Identities = 22/33 (66%), Positives = 26/33 (78%) Frame = -3 Query: 308 GIAFSIIGEIITGKGALAQLNIETGVPISEIXP 210 G A S++GE ITGKG LAQLN+ETG+PI E P Sbjct: 110 GFAASLLGEAITGKGILAQLNLETGIPIYEAEP 142
>PSBS_TOBAC (Q9SMB4) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 274 Score = 75.1 bits (183), Expect = 4e-14 Identities = 38/61 (62%), Positives = 44/61 (72%) Frame = -3 Query: 308 GIAFSIIGEIITGKGALAQLNIETGVPISEIXPXXXXXXXXXXXXXXNPGTGKFISGEDD 129 GIAFSIIGEIITGKGALAQLN ETGVPI+EI P NPGTGKF++ E++ Sbjct: 214 GIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIVFFFVAAINPGTGKFVTDEEE 273 Query: 128 D 126 + Sbjct: 274 E 274 Score = 48.5 bits (114), Expect = 4e-06 Identities = 22/33 (66%), Positives = 26/33 (78%) Frame = -3 Query: 308 GIAFSIIGEIITGKGALAQLNIETGVPISEIXP 210 G A S++GE ITGKG LAQLN+ETG+PI E P Sbjct: 108 GFAASLLGEAITGKGILAQLNLETGIPIYEAEP 140
>PSBS_SPIOL (Q02060) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 274 Score = 73.6 bits (179), Expect = 1e-13 Identities = 37/61 (60%), Positives = 44/61 (72%) Frame = -3 Query: 308 GIAFSIIGEIITGKGALAQLNIETGVPISEIXPXXXXXXXXXXXXXXNPGTGKFISGEDD 129 G AFS+IGEIITGKGALAQLNIETGVPI+EI P NPGTGKFI+ +++ Sbjct: 213 GFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAINPGTGKFITDDEE 272 Query: 128 D 126 + Sbjct: 273 E 273 Score = 46.2 bits (108), Expect = 2e-05 Identities = 21/33 (63%), Positives = 26/33 (78%) Frame = -3 Query: 308 GIAFSIIGEIITGKGALAQLNIETGVPISEIXP 210 G A S++GE ITGKG L+QLN+ETG+PI E P Sbjct: 109 GFAASLLGEGITGKGILSQLNLETGIPIYEAEP 141
>PSBS_ARATH (Q9XF91) Photosystem II 22 kDa protein, chloroplast precursor| (CP22) Length = 265 Score = 70.5 bits (171), Expect = 1e-12 Identities = 35/61 (57%), Positives = 42/61 (68%) Frame = -3 Query: 308 GIAFSIIGEIITGKGALAQLNIETGVPISEIXPXXXXXXXXXXXXXXNPGTGKFISGEDD 129 GIAFS+IGEIITGKGALAQLNIETG+PI +I P NPG GKFI+ + + Sbjct: 204 GIAFSLIGEIITGKGALAQLNIETGIPIQDIEPLVLLNVAFFFFAAINPGNGKFITDDGE 263 Query: 128 D 126 + Sbjct: 264 E 264 Score = 47.8 bits (112), Expect = 7e-06 Identities = 21/33 (63%), Positives = 26/33 (78%) Frame = -3 Query: 308 GIAFSIIGEIITGKGALAQLNIETGVPISEIXP 210 G A S++GE +TGKG LAQLN+ETG+PI E P Sbjct: 100 GFAASLLGEALTGKGILAQLNLETGIPIYEAEP 132
>ARNT2_MOUSE (Q61324) Aryl hydrocarbon receptor nuclear translocator 2 (ARNT| protein 2) Length = 712 Score = 28.5 bits (62), Expect = 4.5 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = -3 Query: 164 PGTGKFISGEDDD*IGTGTRECFLAINCTYVRALPVC 54 P G I ED D +G G++ C +AI V + PVC Sbjct: 290 PPAGMTIPEEDAD-VGQGSKYCLVAIGRLQVTSSPVC 325
>ARNT2_HUMAN (Q9HBZ2) Aryl hydrocarbon receptor nuclear translocator 2 (ARNT| protein 2) Length = 706 Score = 28.5 bits (62), Expect = 4.5 Identities = 15/37 (40%), Positives = 20/37 (54%) Frame = -3 Query: 164 PGTGKFISGEDDD*IGTGTRECFLAINCTYVRALPVC 54 P G I ED D +G G++ C +AI V + PVC Sbjct: 279 PPAGMTIPEEDAD-VGQGSKYCLVAIGRLQVTSSPVC 314
>CCNL1_MOUSE (Q52KE7) Cyclin-L1 (Cyclin-L) (Cyclin Ania-6a)| Length = 532 Score = 27.3 bits (59), Expect = 10.0 Identities = 9/17 (52%), Positives = 12/17 (70%) Frame = -2 Query: 291 HRGDHHGQGRAGAAQHR 241 H+G HHG R+G +HR Sbjct: 515 HKGKHHGGSRSGHGRHR 531
>CCNL1_RAT (Q9R1Q2) Cyclin-L1 (Cyclin-L) (Cyclin Ania-6a)| Length = 527 Score = 27.3 bits (59), Expect = 10.0 Identities = 9/17 (52%), Positives = 12/17 (70%) Frame = -2 Query: 291 HRGDHHGQGRAGAAQHR 241 H+G HHG R+G +HR Sbjct: 510 HKGKHHGGSRSGHGRHR 526 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 26,992,490 Number of Sequences: 219361 Number of extensions: 313527 Number of successful extensions: 984 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 966 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 983 length of database: 80,573,946 effective HSP length: 79 effective length of database: 63,244,427 effective search space used: 1517866248 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
