ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah59n22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DRP1A_ARATH (P42697) Dynamin-related protein 1A (Dynamin-like pr... 32 0.56
2DRP1B_ARATH (Q84XF3) Dynamin-related protein 1B (Dynamin-like pr... 30 2.1
3YCF1_OENBE (P31563) Hypothetical protein ycf1 (ORF 1005) (Fragment) 29 2.8
4PIGF_MOUSE (O09101) Phosphatidylinositol-glycan biosynthesis, cl... 28 6.2

>DRP1A_ARATH (P42697) Dynamin-related protein 1A (Dynamin-like protein A)|
           (Dynamin-like protein 1)
          Length = 610

 Score = 31.6 bits (70), Expect = 0.56
 Identities = 13/16 (81%), Positives = 15/16 (93%)
 Frame = -3

Query: 252 LYRSAQAEIDTVAWSK 205
           LYR+AQ+EID VAWSK
Sbjct: 595 LYRAAQSEIDAVAWSK 610



to top

>DRP1B_ARATH (Q84XF3) Dynamin-related protein 1B (Dynamin-like protein B)|
          Length = 610

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = -3

Query: 252 LYRSAQAEIDTVAWSK 205
           LYRSAQ +I+ VAWSK
Sbjct: 595 LYRSAQTDIEAVAWSK 610



to top

>YCF1_OENBE (P31563) Hypothetical protein ycf1 (ORF 1005) (Fragment)|
          Length = 1005

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +2

Query: 104 ESAIYDPQAKGRDVTKQGVKVN-THXGXISPHXFIFDHATVSISAWALRYS 253
           +S + + + K  ++  +GVK N T    I+PH   FD AT+   ++A  YS
Sbjct: 837 KSKLNEVKRKQNEIYPKGVKFNATPKTEINPHGIRFDAATIEKYSFATGYS 887



to top

>PIGF_MOUSE (O09101) Phosphatidylinositol-glycan biosynthesis, class F protein|
           (PIG-F)
          Length = 219

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 78  SH*MTXALRCAICIVTXCYLV 16
           SH +T AL+C +C +  C+L+
Sbjct: 74  SHKVTRALKCCVCFLMSCFLL 94


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,857,974
Number of Sequences: 219361
Number of extensions: 551142
Number of successful extensions: 711
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 709
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 80,573,946
effective HSP length: 60
effective length of database: 67,412,286
effective search space used: 1617894864
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top