ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah59n22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC154655.2| Mus musculus BAC clone RP24-263O11 from chromosom... 40 3.3
2gb|AC117678.16| Mus musculus chromosome 6, clone RP23-421M9, com... 40 3.3
3gb|AF336378.1| Mus musculus Kel blood group protein (Kel), epith... 40 3.3
4gb|AC017091.8| Homo sapiens BAC clone RP11-506N2 from 4, complet... 40 3.3
5gb|AF443185.2| Paracoccidioides brasiliensis transcriptional rep... 40 3.3

>gb|AC154655.2| Mus musculus BAC clone RP24-263O11 from chromosome 14, complete
             sequence
          Length = 196744

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 124   tcaggcaaaggggagagatg 143
             ||||||||||||||||||||
Sbjct: 75945 tcaggcaaaggggagagatg 75926



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>gb|AC117678.16| Mus musculus chromosome 6, clone RP23-421M9, complete sequence
          Length = 204437

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 34     cacaatacatatggcacacc 53
              ||||||||||||||||||||
Sbjct: 160284 cacaatacatatggcacacc 160265



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>gb|AF336378.1| Mus musculus Kel blood group protein (Kel), epithelial calcium channel
             1 (Ecac1), epithelial calcium channel 2 (Ecac2), and
             ephrin type A receptor (Mep) genes, complete cds; and T
             cell receptor beta chain (Tcr) gene, partial cds
          Length = 169781

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 34    cacaatacatatggcacacc 53
             ||||||||||||||||||||
Sbjct: 78405 cacaatacatatggcacacc 78424



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>gb|AC017091.8| Homo sapiens BAC clone RP11-506N2 from 4, complete sequence
          Length = 201536

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   caaaggggagagatgtcacc 148
             ||||||||||||||||||||
Sbjct: 39527 caaaggggagagatgtcacc 39546



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>gb|AF443185.2| Paracoccidioides brasiliensis transcriptional repressor Sin3p (SIN3)
            gene, complete cds
          Length = 11093

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 127  ggcaaaggggagagatgtca 146
            ||||||||||||||||||||
Sbjct: 2340 ggcaaaggggagagatgtca 2321


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,462,691
Number of Sequences: 3902068
Number of extensions: 1462691
Number of successful extensions: 22326
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22319
Number of HSP's gapped (non-prelim): 7
length of query: 254
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 232
effective length of database: 17,147,199,772
effective search space: 3978150347104
effective search space used: 3978150347104
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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