>QORL_ARATH (Q9ZUC1) Quinone oxidoreductase-like protein At1g23740, chloroplast|
           precursor (EC 1.-.-.-)
          Length = 386

 Score = 85.5 bits (210), Expect = 3e-17
 Identities = 40/57 (70%), Positives = 45/57 (78%)
 Frame = -2

Query: 292 VTSXGSVLAKLXPYLESGKVKPVVDXKGPFPXXQVVEAFSYLETGRAAGKVVISPVP 122
           VTS G VL KL PY+ESGKVKPVVD KGPFP  +V +AFSYLET  A GKVV+ P+P
Sbjct: 330 VTSNGDVLKKLNPYIESGKVKPVVDPKGPFPFSRVADAFSYLETNHATGKVVVYPIP 386

>RT4I1_BRARE (Q7T3C7) Reticulon-4-interacting protein 1 homolog, mitochondrial|
           precursor
          Length = 387

 Score = 40.8 bits (94), Expect = 9e-04
 Identities = 22/50 (44%), Positives = 31/50 (62%)
 Frame = -2

Query: 280 GSVLAKLXPYLESGKVKPVVDXKGPFPXXQVVEAFSYLETGRAAGKVVIS 131
           GS L ++   +++GKV+PVV+    F   QV EAF  +E G A GK V+S
Sbjct: 333 GSALDEVSEMVDAGKVRPVVEE--VFSFAQVPEAFQKVEQGHARGKTVVS 380

>RT4I1_MOUSE (Q924D0) Reticulon-4-interacting protein 1, mitochondrial precursor|
           (NOGO-interacting mitochondrial protein)
          Length = 396

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 19/54 (35%), Positives = 33/54 (61%)
 Frame = -2

Query: 286 SXGSVLAKLXPYLESGKVKPVVDXKGPFPXXQVVEAFSYLETGRAAGKVVISPV 125
           + G  L ++   +++GK++PV++    FP  +V EAF  +E G A GK V++ V
Sbjct: 345 ASGPYLDEIAELVDAGKIRPVIERT--FPFSEVPEAFLKVERGHARGKTVVNVV 396

>RT4I1_HUMAN (Q8WWV3) Reticulon-4-interacting protein 1, mitochondrial precursor|
           (NOGO-interacting mitochondrial protein)
          Length = 396

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 20/54 (37%), Positives = 32/54 (59%)
 Frame = -2

Query: 286 SXGSVLAKLXPYLESGKVKPVVDXKGPFPXXQVVEAFSYLETGRAAGKVVISPV 125
           + G  L  +   +++GK++PV++    FP  +V EAF  +E G A GK VI+ V
Sbjct: 345 ASGPCLDDIAELVDAGKIRPVIEQT--FPFSKVPEAFLKVERGHARGKTVINVV 396

>VAT1_HUMAN (Q99536) Synaptic vesicle membrane protein VAT-1 homolog (EC|
           1.-.-.-)
          Length = 393

 Score = 31.6 bits (70), Expect = 0.54
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -2

Query: 274 VLAKLXPYLESGKVKPVVDXKGPFPXXQVVEAFSYLETGRAAGKVVISPVP 122
           V+A+L      G +KP +D   PF   +V +A   ++  +  GKV++ P P
Sbjct: 341 VVARLLALYNQGHIKPHIDSVWPF--EKVADAMKQMQEKKNVGKVLLVPGP 389

>QOR_LEIAM (P42865) Probable quinone oxidoreductase (EC 1.6.5.5)|
           (NADPH:quinone reductase) (P36)
          Length = 340

 Score = 31.6 bits (70), Expect = 0.54
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = -2

Query: 271 LAKLXPYLESGKVKPVVDXKGPFPXXQVVEAFSYLETGRAAGKVVI 134
           +A L  YL++G+VK  VD K       V +A  +L +G   GKV++
Sbjct: 292 MANLLQYLKAGQVKLFVDKKVFHGLSSVADAVDHLYSGANYGKVLV 337

>VAT1_MOUSE (Q62465) Synaptic vesicle membrane protein VAT-1 homolog (EC|
           1.-.-.-)
          Length = 406

 Score = 31.2 bits (69), Expect = 0.70
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = -2

Query: 277 SVLAKLXPYLESGKVKPVVDXKGPFPXXQVVEAFSYLETGRAAGKVVISPVP 122
           SV+ +L      G +KP +D   PF   +V +A   ++  +  GKV++ P P
Sbjct: 353 SVVTRLVALYNQGHIKPRIDSVWPF--EKVADAMKQMQEKKNIGKVLLVPGP 402

>LIPB1_HUMAN (Q86W92) Liprin-beta-1 (Protein tyrosine phosphatase receptor type|
           f polypeptide-interacting protein-binding protein 1)
           (PTPRF-interacting protein-binding protein 1) (hSGT2)
          Length = 1011

 Score = 31.2 bits (69), Expect = 0.70
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = +2

Query: 68  WQKHTTCAWLLAIYSGVSWNRRNDHFAGGSSCLEVGKRLHDLGXGERPLGVDHRLHLPGL 247
           W K   C WL+    G   N      A G + L+  ++  DL   E+ LG+ H LH   L
Sbjct: 647 WTKEQVCNWLMEQGLGSYLNSGKHWIASGQTLLQASQQ--DL---EKELGIKHSLHRKKL 701

Query: 248 EV 253
           ++
Sbjct: 702 QL 703

>AST1_YEAST (P35183) Protein AST1|
          Length = 429

 Score = 30.8 bits (68), Expect = 0.92
 Identities = 17/41 (41%), Positives = 27/41 (65%)
 Frame = -2

Query: 253 YLESGKVKPVVDXKGPFPXXQVVEAFSYLETGRAAGKVVIS 131
           +L++G VK VVD    +   +  EAFSY+ T RA GK++++
Sbjct: 387 FLKNGTVKCVVDKVYDWKDHK--EAFSYMATQRAQGKLIMN 425

>FAS_MOUSE (P19096) Fatty acid synthase (EC 2.3.1.85) [Includes:|
            [Acyl-carrier-protein] S-acetyltransferase (EC 2.3.1.38);
            [Acyl-carrier-protein] S-malonyltransferase (EC
            2.3.1.39); 3-oxoacyl-[acyl-carrier-protein] synthase (EC
            2.3.1.41); 3-oxoacyl-[acyl-
          Length = 2504

 Score = 30.8 bits (68), Expect = 0.92
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = -2

Query: 274  VLAKLXPYLESGKVKPVVDXKGPFPXXQVVEAFSYLETGRAAGKVVI 134
            V A L   +  G VKP+      FP  QV +AF Y+  G+  GKV++
Sbjct: 1803 VAALLKAGIRDGVVKPLKCTV--FPKAQVEDAFRYMAQGKHIGKVLV 1847

>QORH_ARATH (Q9SV68) Putative chloroplastic quinone-oxidoreductase homolog (EC|
           1.-.-.-)
          Length = 329

 Score = 30.8 bits (68), Expect = 0.92
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -2

Query: 250 LESGKVKPVVDXKGPFPXXQVVEAFSYLETGRAAGKVVISP 128
           ++ GKVK V+D K P    +  +A++    G A GK+++ P
Sbjct: 291 VKEGKVKTVIDSKHPLSKAE--DAWAKSIDGHATGKIIVEP 329

>FAS_RAT (P12785) Fatty acid synthase (EC 2.3.1.85) [Includes:|
            [Acyl-carrier-protein] S-acetyltransferase (EC 2.3.1.38);
            [Acyl-carrier-protein] S-malonyltransferase (EC
            2.3.1.39); 3-oxoacyl-[acyl-carrier-protein] synthase (EC
            2.3.1.41); 3-oxoacyl-[acyl-ca
          Length = 2505

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 250  LESGKVKPVVDXKGPFPXXQVVEAFSYLETGRAAGKVVI 134
            +  G VKP+      FP  QV +AF Y+  G+  GKV++
Sbjct: 1812 IRDGVVKPLKCTV--FPKAQVEDAFRYMAQGKHIGKVLV 1848

>FAS_BOVIN (Q71SP7) Fatty acid synthase (EC 2.3.1.85) [Includes:|
            [Acyl-carrier-protein] S-acetyltransferase (EC 2.3.1.38);
            [Acyl-carrier-protein] S-malonyltransferase (EC
            2.3.1.39); 3-oxoacyl-[acyl-carrier-protein] synthase (EC
            2.3.1.41); 3-oxoacyl-[acyl-
          Length = 2513

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 250  LESGKVKPVVDXKGPFPXXQVVEAFSYLETGRAAGKVVI 134
            +  G V+P+   +  FP  Q  +AF Y+  G+  GKVVI
Sbjct: 1820 IRKGVVQPL--KRTVFPRTQAEDAFRYMAQGKHIGKVVI 1856

>ASPM_MOUSE (Q8CJ27) Abnormal spindle-like microcephaly-associated protein|
            homolog (Calmodulin-binding protein 1) (Spindle and
            hydroxyurea checkpoint abnormal protein)
            (Calmodulin-binding protein Sha1)
          Length = 3122

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 53   LLSNPWQKHTTCAWLL-AIYSGVSWNRRNDH 142
            LL    +K T+CA  + A++ G SW ++NDH
Sbjct: 2841 LLCRRQEKITSCATRIQALWRGYSWRKKNDH 2871

>POLG_FMDVI (P03310) Genome polyprotein [Contains: Coat protein VP1; Core|
           protein P52] (Fragment)
          Length = 234

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 111 AVSHGTGEMTTLPAALPVSR*ENASTTWXXGKGPL 215
           AV+H TG++T +P   PVS  +N +      KGPL
Sbjct: 89  AVTH-TGKLTWVPNGAPVSALDNTANPTAYHKGPL 122

>POLG_FMDVT (P15072) Genome polyprotein [Contains: Leader protease (EC|
           3.4.22.46) (P20A); Coat protein VP4; Coat protein VP2;
           Coat protein VP3; Coat protein VP1; Core protein P12]
           (Fragment)
          Length = 1011

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 111 AVSHGTGEMTTLPAALPVSR*ENASTTWXXGKGPL 215
           AV+H TG++T +P   PVS  +N +      KGPL
Sbjct: 802 AVTH-TGKLTWVPNGAPVSALDNTTNPTAYHKGPL 835

>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22|
          Length = 1010

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 228 RWSTPRGLSPSPRSWRRFPTSRQEEPPAK 142
           R S+PR  SP PR   R P  R + PP +
Sbjct: 114 RSSSPRARSPPPRRHSRSPPLRGQPPPPR 142

>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 222 STPRGLSPSPRSWRRFPTSRQEEPP 148
           S PR  SPSP   RR P+ R+  PP
Sbjct: 568 SLPRRRSPSPPPRRRSPSPRRYSPP 592


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,124,764
Number of Sequences: 219361
Number of extensions: 747544
Number of successful extensions: 2039
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2037
length of database: 80,573,946
effective HSP length: 73
effective length of database: 64,560,593
effective search space used: 1549454232
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)