ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah59n16 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_507580.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0011E04.125 mRNA Length = 1513 Score = 135 bits (68), Expect = 9e-29 Identities = 148/177 (83%) Strand = Plus / Minus Query: 117 tctcatggaacaggcgaaatgaccactttgccggcggctcttcctgtctcgaggtaggaa 176 |||||||||| || || ||||| ||||| |||| |||||| ||||||||||||||||| Sbjct: 1346 tctcatggaatgggtgagatgacaactttcccggtggctctccctgtctcgaggtaggag 1287 Query: 177 aacgcctccacgacctgggnganggggaaaggccccttggngtcgaccaccggcttcacc 236 || |||||||| ||||| | || || ||| |||||||||| ||| |||| |||||||||| Sbjct: 1286 aaggcctccacaacctgtgagaaggcgaatggccccttggggtccaccagcggcttcacc 1227 Query: 237 ttcccggactcgaggtaagggntgagcttngccaggacggacccgtnngaggtgacc 293 ||||||||||| ||||| ||| ||||||| ||| || ||||||| ||||||||| Sbjct: 1226 ttcccggactccaggtatgggttgagcttctccaacaccgacccgtcggaggtgacc 1170
>ref|XM_482105.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1392 Score = 135 bits (68), Expect = 9e-29 Identities = 148/177 (83%) Strand = Plus / Minus Query: 117 tctcatggaacaggcgaaatgaccactttgccggcggctcttcctgtctcgaggtaggaa 176 |||||||||| || || ||||| ||||| |||| |||||| ||||||||||||||||| Sbjct: 1189 tctcatggaatgggtgagatgacaactttcccggtggctctccctgtctcgaggtaggag 1130 Query: 177 aacgcctccacgacctgggnganggggaaaggccccttggngtcgaccaccggcttcacc 236 || |||||||| ||||| | || || ||| |||||||||| ||| |||| |||||||||| Sbjct: 1129 aaggcctccacaacctgtgagaaggcgaatggccccttggggtccaccagcggcttcacc 1070 Query: 237 ttcccggactcgaggtaagggntgagcttngccaggacggacccgtnngaggtgacc 293 ||||||||||| ||||| ||| ||||||| ||| || ||||||| ||||||||| Sbjct: 1069 ttcccggactccaggtatgggttgagcttctccaacaccgacccgtcggaggtgacc 1013
>ref|XM_507214.2| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBb0011E04.125 mRNA Length = 1510 Score = 135 bits (68), Expect = 9e-29 Identities = 148/177 (83%) Strand = Plus / Minus Query: 117 tctcatggaacaggcgaaatgaccactttgccggcggctcttcctgtctcgaggtaggaa 176 |||||||||| || || ||||| ||||| |||| |||||| ||||||||||||||||| Sbjct: 1234 tctcatggaatgggtgagatgacaactttcccggtggctctccctgtctcgaggtaggag 1175 Query: 177 aacgcctccacgacctgggnganggggaaaggccccttggngtcgaccaccggcttcacc 236 || |||||||| ||||| | || || ||| |||||||||| ||| |||| |||||||||| Sbjct: 1174 aaggcctccacaacctgtgagaaggcgaatggccccttggggtccaccagcggcttcacc 1115 Query: 237 ttcccggactcgaggtaagggntgagcttngccaggacggacccgtnngaggtgacc 293 ||||||||||| ||||| ||| ||||||| ||| || ||||||| ||||||||| Sbjct: 1114 ttcccggactccaggtatgggttgagcttctccaacaccgacccgtcggaggtgacc 1058
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 135 bits (68), Expect = 9e-29 Identities = 148/177 (83%) Strand = Plus / Plus Query: 117 tctcatggaacaggcgaaatgaccactttgccggcggctcttcctgtctcgaggtaggaa 176 |||||||||| || || ||||| ||||| |||| |||||| ||||||||||||||||| Sbjct: 17848737 tctcatggaatgggtgagatgacaactttcccggtggctctccctgtctcgaggtaggag 17848796 Query: 177 aacgcctccacgacctgggnganggggaaaggccccttggngtcgaccaccggcttcacc 236 || |||||||| ||||| | || || ||| |||||||||| ||| |||| |||||||||| Sbjct: 17848797 aaggcctccacaacctgtgagaaggcgaatggccccttggggtccaccagcggcttcacc 17848856 Query: 237 ttcccggactcgaggtaagggntgagcttngccaggacggacccgtnngaggtgacc 293 ||||||||||| ||||| ||| ||||||| ||| || ||||||| ||||||||| Sbjct: 17848857 ttcccggactccaggtatgggttgagcttctccaacaccgacccgtcggaggtgacc 17848913
>dbj|AP004675.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0709D11 Length = 146856 Score = 135 bits (68), Expect = 9e-29 Identities = 148/177 (83%) Strand = Plus / Plus Query: 117 tctcatggaacaggcgaaatgaccactttgccggcggctcttcctgtctcgaggtaggaa 176 |||||||||| || || ||||| ||||| |||| |||||| ||||||||||||||||| Sbjct: 70243 tctcatggaatgggtgagatgacaactttcccggtggctctccctgtctcgaggtaggag 70302 Query: 177 aacgcctccacgacctgggnganggggaaaggccccttggngtcgaccaccggcttcacc 236 || |||||||| ||||| | || || ||| |||||||||| ||| |||| |||||||||| Sbjct: 70303 aaggcctccacaacctgtgagaaggcgaatggccccttggggtccaccagcggcttcacc 70362 Query: 237 ttcccggactcgaggtaagggntgagcttngccaggacggacccgtnngaggtgacc 293 ||||||||||| ||||| ||| ||||||| ||| || ||||||| ||||||||| Sbjct: 70363 ttcccggactccaggtatgggttgagcttctccaacaccgacccgtcggaggtgacc 70419
>dbj|AK109433.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-C06, full insert sequence Length = 1503 Score = 135 bits (68), Expect = 9e-29 Identities = 148/177 (83%) Strand = Plus / Minus Query: 117 tctcatggaacaggcgaaatgaccactttgccggcggctcttcctgtctcgaggtaggaa 176 |||||||||| || || ||||| ||||| |||| |||||| ||||||||||||||||| Sbjct: 1340 tctcatggaatgggtgagatgacaactttcccggtggctctccctgtctcgaggtaggag 1281 Query: 177 aacgcctccacgacctgggnganggggaaaggccccttggngtcgaccaccggcttcacc 236 || |||||||| ||||| | || || ||| |||||||||| ||| |||| |||||||||| Sbjct: 1280 aaggcctccacaacctgtgagaaggcgaatggccccttggggtccaccagcggcttcacc 1221 Query: 237 ttcccggactcgaggtaagggntgagcttngccaggacggacccgtnngaggtgacc 293 ||||||||||| ||||| ||| ||||||| ||| || ||||||| ||||||||| Sbjct: 1220 ttcccggactccaggtatgggttgagcttctccaacaccgacccgtcggaggtgacc 1164
>dbj|AP005443.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0011E04 Length = 136767 Score = 135 bits (68), Expect = 9e-29 Identities = 148/177 (83%) Strand = Plus / Plus Query: 117 tctcatggaacaggcgaaatgaccactttgccggcggctcttcctgtctcgaggtaggaa 176 |||||||||| || || ||||| ||||| |||| |||||| ||||||||||||||||| Sbjct: 123131 tctcatggaatgggtgagatgacaactttcccggtggctctccctgtctcgaggtaggag 123190 Query: 177 aacgcctccacgacctgggnganggggaaaggccccttggngtcgaccaccggcttcacc 236 || |||||||| ||||| | || || ||| |||||||||| ||| |||| |||||||||| Sbjct: 123191 aaggcctccacaacctgtgagaaggcgaatggccccttggggtccaccagcggcttcacc 123250 Query: 237 ttcccggactcgaggtaagggntgagcttngccaggacggacccgtnngaggtgacc 293 ||||||||||| ||||| ||| ||||||| ||| || ||||||| ||||||||| Sbjct: 123251 ttcccggactccaggtatgggttgagcttctccaacaccgacccgtcggaggtgacc 123307
>dbj|AK119345.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-131-E02, full insert sequence Length = 2944 Score = 135 bits (68), Expect = 9e-29 Identities = 148/177 (83%) Strand = Plus / Plus Query: 117 tctcatggaacaggcgaaatgaccactttgccggcggctcttcctgtctcgaggtaggaa 176 |||||||||| || || ||||| ||||| |||| |||||| ||||||||||||||||| Sbjct: 1197 tctcatggaatgggtgagatgacaactttcccggtggctctccctgtctcgaggtaggag 1256 Query: 177 aacgcctccacgacctgggnganggggaaaggccccttggngtcgaccaccggcttcacc 236 || |||||||| ||||| | || || ||| |||||||||| ||| |||| |||||||||| Sbjct: 1257 aaggcctccacaacctgtgagaaggcgaatggccccttggggtccaccagcggcttcacc 1316 Query: 237 ttcccggactcgaggtaagggntgagcttngccaggacggacccgtnngaggtgacc 293 ||||||||||| ||||| ||| ||||||| ||| || ||||||| ||||||||| Sbjct: 1317 ttcccggactccaggtatgggttgagcttctccaacaccgacccgtcggaggtgacc 1373
>dbj|AK112013.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-C09, full insert sequence Length = 980 Score = 135 bits (68), Expect = 9e-29 Identities = 148/177 (83%) Strand = Plus / Minus Query: 117 tctcatggaacaggcgaaatgaccactttgccggcggctcttcctgtctcgaggtaggaa 176 |||||||||| || || ||||| ||||| |||| |||||| ||||||||||||||||| Sbjct: 682 tctcatggaatgggtgagatgacaactttcccggtggctctccctgtctcgaggtaggag 623 Query: 177 aacgcctccacgacctgggnganggggaaaggccccttggngtcgaccaccggcttcacc 236 || |||||||| ||||| | || || ||| |||||||||| ||| |||| |||||||||| Sbjct: 622 aaggcctccacaacctgtgagaaggcgaatggccccttggggtccaccagcggcttcacc 563 Query: 237 ttcccggactcgaggtaagggntgagcttngccaggacggacccgtnngaggtgacc 293 ||||||||||| ||||| ||| ||||||| ||| || ||||||| ||||||||| Sbjct: 562 ttcccggactccaggtatgggttgagcttctccaacaccgacccgtcggaggtgacc 506
>dbj|AK104318.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-D02, full insert sequence Length = 1392 Score = 135 bits (68), Expect = 9e-29 Identities = 148/177 (83%) Strand = Plus / Minus Query: 117 tctcatggaacaggcgaaatgaccactttgccggcggctcttcctgtctcgaggtaggaa 176 |||||||||| || || ||||| ||||| |||| |||||| ||||||||||||||||| Sbjct: 1189 tctcatggaatgggtgagatgacaactttcccggtggctctccctgtctcgaggtaggag 1130 Query: 177 aacgcctccacgacctgggnganggggaaaggccccttggngtcgaccaccggcttcacc 236 || |||||||| ||||| | || || ||| |||||||||| ||| |||| |||||||||| Sbjct: 1129 aaggcctccacaacctgtgagaaggcgaatggccccttggggtccaccagcggcttcacc 1070 Query: 237 ttcccggactcgaggtaagggntgagcttngccaggacggacccgtnngaggtgacc 293 ||||||||||| ||||| ||| ||||||| ||| || ||||||| ||||||||| Sbjct: 1069 ttcccggactccaggtatgggttgagcttctccaacaccgacccgtcggaggtgacc 1013
>dbj|AK069608.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019N13, full insert sequence Length = 1510 Score = 135 bits (68), Expect = 9e-29 Identities = 148/177 (83%) Strand = Plus / Minus Query: 117 tctcatggaacaggcgaaatgaccactttgccggcggctcttcctgtctcgaggtaggaa 176 |||||||||| || || ||||| ||||| |||| |||||| ||||||||||||||||| Sbjct: 1234 tctcatggaatgggtgagatgacaactttcccggtggctctccctgtctcgaggtaggag 1175 Query: 177 aacgcctccacgacctgggnganggggaaaggccccttggngtcgaccaccggcttcacc 236 || |||||||| ||||| | || || ||| |||||||||| ||| |||| |||||||||| Sbjct: 1174 aaggcctccacaacctgtgagaaggcgaatggccccttggggtccaccagcggcttcacc 1115 Query: 237 ttcccggactcgaggtaagggntgagcttngccaggacggacccgtnngaggtgacc 293 ||||||||||| ||||| ||| ||||||| ||| || ||||||| ||||||||| Sbjct: 1114 ttcccggactccaggtatgggttgagcttctccaacaccgacccgtcggaggtgacc 1058
>emb|AL670256.6| Mouse DNA sequence from clone RP23-300H22 on chromosome 4, complete sequence Length = 237318 Score = 42.1 bits (21), Expect = 0.97 Identities = 21/21 (100%) Strand = Plus / Minus Query: 42 caacaaatattttgctcagta 62 ||||||||||||||||||||| Sbjct: 120555 caacaaatattttgctcagta 120535 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,612,873 Number of Sequences: 3902068 Number of extensions: 1612873 Number of successful extensions: 36826 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 36800 Number of HSP's gapped (non-prelim): 26 length of query: 293 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 271 effective length of database: 17,147,199,772 effective search space: 4646891138212 effective search space used: 4646891138212 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
