ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah59n08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PYRC_METKA (Q8TXX9) Dihydroorotase (EC 3.5.2.3) (DHOase) 30 1.6
2I18BP_MOUSE (Q9Z0M9) Interleukin-18-binding protein precursor (I... 30 2.1
3ACON_SCHPO (O13966) Aconitate hydratase, mitochondrial precursor... 28 4.7
4SCRA_LIMPO (Q25390) Alpha-scruin 28 6.1
5ADRO_HUMAN (P22570) NADPH:adrenodoxin oxidoreductase, mitochondr... 28 6.1
6IF4B_YEAST (P34167) Eukaryotic translation initiation factor 4B ... 28 7.9
7VL1_HPV05 (P06917) Major capsid protein L1 28 7.9

>PYRC_METKA (Q8TXX9) Dihydroorotase (EC 3.5.2.3) (DHOase)|
          Length = 426

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 187 DVNAMPWECVPVIVQYWMPDGPM*ICHKQ 101
           D  A+PW  +P I +   PDGP+ I H +
Sbjct: 154 DAPAVPWSTLPEIFRELSPDGPLTIFHPE 182



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>I18BP_MOUSE (Q9Z0M9) Interleukin-18-binding protein precursor (IL-18BP)|
           (Interferon gamma-inducing factor-binding protein)
          Length = 191

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -2

Query: 197 SSDRCECNAMGVRTRYCPVLDAGWPDVNLP*AIEPFFLHHFLTRNCTA 54
           S D C   +  V T+  P LD  WP+  +P       L+  LT +CTA
Sbjct: 41  SKDPCSSWSPAVPTKQYPALDVIWPEKEVP-------LNGTLTLSCTA 81



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>ACON_SCHPO (O13966) Aconitate hydratase, mitochondrial precursor (EC 4.2.1.3)|
           (Citrate hydro-lyase) (Aconitase)
          Length = 778

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -2

Query: 239 PVNSDIYPR-TYIKISSDRCECNAMGVRTRYCPVLDAGWPDVNLP 108
           PVN DI    +Y+K+  DR  C     +      + AG P+V +P
Sbjct: 73  PVNQDIERGVSYLKLRPDRVACQDATAQMAILQFMSAGMPEVAVP 117



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>SCRA_LIMPO (Q25390) Alpha-scruin|
          Length = 918

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = -3

Query: 211 HISRYRPI--DVNAMPWECVPVIVQYWMPD 128
           +IS YRP+  D + +  E VPV + +W PD
Sbjct: 478 YISGYRPLPPDQDDLSKELVPVSIPFWPPD 507



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>ADRO_HUMAN (P22570) NADPH:adrenodoxin oxidoreductase, mitochondrial precursor|
           (EC 1.18.1.2) (Adrenodoxin reductase) (AR) (Ferredoxin
           reductase) (Ferredoxin--NADP(+) reductase)
          Length = 491

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = -2

Query: 134 AGWPDVNLP*A-IEPFFLHHFLTRNCTAM*CII 39
           + WP   LP A   P F HHF T+  T   C++
Sbjct: 12  SAWPRTRLPPAGSTPSFCHHFSTQEKTPQICVV 44



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>IF4B_YEAST (P34167) Eukaryotic translation initiation factor 4B (eIF-4B)|
          Length = 436

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 199 YRPIDVNAMPWECVPVIVQYWMPDG 125
           YR + +N +PW+  P  VQ W+ DG
Sbjct: 101 YRAV-INNIPWDITPEGVQAWVEDG 124



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>VL1_HPV05 (P06917) Major capsid protein L1|
          Length = 516

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 59  YNSSSENGEEKKVLLLMANSHRAIRHPVLDNNGYALP 169
           +N  + NG++ +V  +  N HR  R  + D N +ALP
Sbjct: 51  FNVYNINGDKLEVPKVSGNQHRVFRLKLPDPNRFALP 87


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,278,021
Number of Sequences: 219361
Number of extensions: 790103
Number of successful extensions: 2603
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2603
length of database: 80,573,946
effective HSP length: 67
effective length of database: 65,876,759
effective search space used: 1581042216
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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