| Clone Name | rbah59m09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF109194.1|AF109194 Hordeum vulgare glutathione-S-transferase mRNA, complete cds Length = 1092 Score = 95.6 bits (48), Expect = 3e-17 Identities = 60/65 (92%) Strand = Plus / Minus Query: 19 aaatggngtcncaggnggcaactcggtgctgcccccaccgaagaccagggttgacacttg 78 |||||| || |||| ||||||||||||||||||||||||||||||||||||||||| || Sbjct: 1002 aaatggaatcgcaggtggcaactcggtgctgcccccaccgaagaccagggttgacacatg 943 Query: 79 acaca 83 ||||| Sbjct: 942 acaca 938
>emb|AJ414697.1|TAE414697 Triticum aestivum mRNA for glutathione transferase (gstu1A gene) Length = 1085 Score = 87.7 bits (44), Expect = 7e-15 Identities = 53/55 (96%), Gaps = 1/55 (1%) Strand = Plus / Minus Query: 30 caggnggcaactcggtgctgcccccaccgaagaccagggttgacac-ttgacaca 83 |||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1011 caggtggcaactcggtgctgcccccaccgaagaccagggttgacacattgacaca 957
>gb|BT009437.1| Triticum aestivum clone wlmk4.pk0012.c2:fis, full insert mRNA sequence Length = 1966 Score = 46.1 bits (23), Expect = 0.023 Identities = 36/39 (92%), Gaps = 1/39 (2%) Strand = Plus / Minus Query: 46 gctgcccccaccgaagaccagggttgacac-ttgacaca 83 |||||| |||| |||||||||||||||||| |||||||| Sbjct: 990 gctgccaccactgaagaccagggttgacacattgacaca 952
>gb|AY550532.1| Salmo salar clone Hae459R microsatellite sequence Length = 463 Score = 42.1 bits (21), Expect = 0.36 Identities = 21/21 (100%) Strand = Plus / Plus Query: 37 caactcggtgctgcccccacc 57 ||||||||||||||||||||| Sbjct: 76 caactcggtgctgcccccacc 96
>gb|AC121781.3| Mus musculus BAC clone RP23-363D24 from chromosome X, complete sequence Length = 174187 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 acacatgacacacacagaga 98 |||||||||||||||||||| Sbjct: 77184 acacatgacacacacagaga 77203
>emb|BX294154.1| Pirellula sp. strain 1 complete genome; segment 22/24 Length = 299050 Score = 40.1 bits (20), Expect = 1.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 36 gcaactcggtgctgcccccaccga 59 |||||||||||||||| ||||||| Sbjct: 157810 gcaactcggtgctgcctccaccga 157833
>gb|AC023686.4| Drosophila melanogaster X BAC RP98-30C1 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 170626 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 tgacacttgacacatgacac 89 |||||||||||||||||||| Sbjct: 52019 tgacacttgacacatgacac 52000
>gb|AC025262.27|AC025262 Homo sapiens 12 BAC RP11-629N8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 167276 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 aagaccagggttgacacttg 78 |||||||||||||||||||| Sbjct: 163453 aagaccagggttgacacttg 163434
>gb|AC023701.4| Drosophila melanogaster X BAC RP98-29B16 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 198245 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 70 tgacacttgacacatgacac 89 |||||||||||||||||||| Sbjct: 73990 tgacacttgacacatgacac 74009
>gb|AC167565.1| Mus musculus BAC clone RP24-84D8 from chromosome 14, complete sequence Length = 199101 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 ttgacacttgacacatgaca 88 |||||||||||||||||||| Sbjct: 159355 ttgacacttgacacatgaca 159336
>gb|AC105300.24| Mus musculus strain C57BL/6J clone rp23-291e5 map 17, complete sequence Length = 168882 Score = 40.1 bits (20), Expect = 1.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 72 acacttgacacatgacacacacag 95 |||| ||||||||||||||||||| Sbjct: 141260 acacatgacacatgacacacacag 141283
>gb|AC154412.3| Mus musculus BAC clone RP24-225G4 from 14, complete sequence Length = 182048 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 ttgacacttgacacatgaca 88 |||||||||||||||||||| Sbjct: 13049 ttgacacttgacacatgaca 13030
>gb|AE003432.5| Drosophila melanogaster chromosome X, section 16 of 74 of the complete sequence Length = 319328 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 70 tgacacttgacacatgacac 89 |||||||||||||||||||| Sbjct: 287607 tgacacttgacacatgacac 287588
>dbj|AP002342.3| Homo sapiens genomic DNA, chromosome 11q clone:CTD-2258N2, complete sequences Length = 174548 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 caactcggtgctgcccccac 56 |||||||||||||||||||| Sbjct: 75707 caactcggtgctgcccccac 75688
>gb|AC154579.3| Mus musculus BAC clone RP23-376B1 from chromosome 17, complete sequence Length = 193686 Score = 40.1 bits (20), Expect = 1.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 acacttgacacatgacacacacag 95 |||| ||||||||||||||||||| Sbjct: 190977 acacatgacacatgacacacacag 190954
>emb|AL845264.18| Mouse DNA sequence from clone RP23-116F18 on chromosome 2, complete sequence Length = 207724 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 79 acacatgacacacacagaga 98 |||||||||||||||||||| Sbjct: 183852 acacatgacacacacagaga 183871
>emb|BX005240.7| Mouse DNA sequence from clone RP23-185M16 on chromosome X, complete sequence Length = 197310 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 79 acacatgacacacacagaga 98 |||||||||||||||||||| Sbjct: 59239 acacatgacacacacagaga 59220
>gb|AY244454.1| Halichondria panicea microsatellite Hapa37 sequence Length = 443 Score = 38.2 bits (19), Expect = 5.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 72 acacttgacacatgacacacaca 94 |||| |||||||||||||||||| Sbjct: 178 acacatgacacatgacacacaca 200
>emb|AL603913.14| Mouse DNA sequence from clone RP23-103H9 on chromosome 11 Contains the gene for a novel protein (3732413I11Rik), a novel gene (4930597A21Rik), the 5' end of the Ebf1 gene for early B-cell factor 1, a novel gene and a CpG island, complete sequence Length = 215524 Score = 38.2 bits (19), Expect = 5.6 Identities = 26/27 (96%), Gaps = 1/27 (3%) Strand = Plus / Plus Query: 72 acacttgacacatgacacacacagaga 98 ||||||||||||| ||||||||||||| Sbjct: 32638 acacttgacacat-acacacacagaga 32663
>gb|AC010433.9| Homo sapiens chromosome 5 clone CTD-2202L20, complete sequence Length = 258929 Score = 38.2 bits (19), Expect = 5.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 70 tgacacttgacacatgacacaca 92 |||||| |||||||||||||||| Sbjct: 217167 tgacacatgacacatgacacaca 217189
>gb|AC023748.4| Drosophila melanogaster X BAC RP98-36F8 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 156096 Score = 38.2 bits (19), Expect = 5.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 71 gacacttgacacatgacacacac 93 |||||||||||| |||||||||| Sbjct: 70790 gacacttgacacttgacacacac 70768
>gb|AC023724.5| Drosophila melanogaster X BAC RP98-14B2 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 181974 Score = 38.2 bits (19), Expect = 5.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 71 gacacttgacacatgacacacac 93 |||||||||||| |||||||||| Sbjct: 38725 gacacttgacacttgacacacac 38703
>gb|AC154727.2| Mus musculus BAC clone RP24-375I15 from 14, complete sequence Length = 189907 Score = 38.2 bits (19), Expect = 5.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 79 acacatgacacacacagag 97 ||||||||||||||||||| Sbjct: 144336 acacatgacacacacagag 144318
>gb|AE003445.2| Drosophila melanogaster chromosome X, section 29 of 74 of the complete sequence Length = 334222 Score = 38.2 bits (19), Expect = 5.6 Identities = 22/23 (95%) Strand = Plus / Plus Query: 71 gacacttgacacatgacacacac 93 |||||||||||| |||||||||| Sbjct: 115598 gacacttgacacttgacacacac 115620 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 752,516 Number of Sequences: 3902068 Number of extensions: 752516 Number of successful extensions: 91129 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 91064 Number of HSP's gapped (non-prelim): 72 length of query: 121 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 100 effective length of database: 17,151,101,840 effective search space: 1715110184000 effective search space used: 1715110184000 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)