ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah59m01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR... 482 e-133
2gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5... 369 4e-99
3gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR... 327 1e-86
4gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for... 252 6e-64
5gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carbo... 214 1e-52
6gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA 214 1e-52
7gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form... 170 2e-39
8emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putat... 147 2e-32
9gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome... 127 2e-26
10gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome... 127 2e-26
11gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb... 127 2e-26
12dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ... 127 2e-26
13dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 127 2e-26
14dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 2e-26
15dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 2e-26
16dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 2e-26
17dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 2e-26
18gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 127 2e-26
19dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s... 127 2e-26
20dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l... 127 2e-26
21gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplas... 115 9e-23
22dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 1e-21
23gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tet... 96 8e-17
24dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 72 1e-09
25dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic D... 72 1e-09
26gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ... 64 3e-07
27gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ... 64 3e-07
28gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase ... 64 3e-07
29gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ... 64 3e-07
30gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/ox... 48 0.017
31gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/ox... 48 0.017
32gb|AY110044.1| Zea mays CL1146_1 mRNA sequence 48 0.017
33dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.0
34gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.0
35emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa... 42 1.0
36gb|AY312576.1| Larrea tridentata Rubisco activase beta form prec... 40 4.1
37gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complet... 40 4.1
38gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete... 40 4.1
39gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, comp... 40 4.1
40gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, compl... 40 4.1
41gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone... 40 4.1 
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  482 bits (243), Expect = e-133
 Identities = 283/297 (95%), Gaps = 2/297 (0%)
 Strand = Plus / Minus

                                                                        
Query: 15   atatattaacanancatgcccagcaatacgcttggatgcgatgcggacttaggtaggtaa 74
            ||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1366 atatattaacaaaacatgcccagcaat-cgcttggatgcgatgcggacttaggtaggtaa 1308

                                                                        
Query: 75   aacatcagatattaaaagtggcatgcttaaaaggtgtnaaggcagctgccgtcgtcgctc 134
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1307 aacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctc 1248

                                                                        
Query: 135  cttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaa 194
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1247 cttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaa 1188

                                                                        
Query: 195  gtaccttgctgtgctcctttaccgtnttnntgaaccagtcttcatcgcatcctggttagc 254
            |||||||||||||||||||||||||      |||||||||||||||||||||||||||||
Sbjct: 1187 gtaccttgctgtgctcctttaccgta-gaaggaaccagtcttcatcgcatcctggttagc 1129

                                                                     
Query: 255  atcacccagagctgcctggntcatgtangtgtcancangctgcacacgcttgacatt 311
            ||||||||||||||||||| ||||||| |||||| || |||||||||||||||||||
Sbjct: 1128 atcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacatt 1072
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>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  369 bits (186), Expect = 4e-99
 Identities = 199/203 (98%), Gaps = 1/203 (0%)
 Strand = Plus / Minus

                                                                        
Query: 15   atatattaacanancatgcccagcaatacgcttggatgcgatgcggacttaggtaggtaa 74
            ||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 7726 atatattaacaaaacatgcccagcaat-cgcttggatgcgatgcggacttaggtaggtaa 7668

                                                                        
Query: 75   aacatcagatattaaaagtggcatgcttaaaaggtgtnaaggcagctgccgtcgtcgctc 134
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 7667 aacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctc 7608

                                                                        
Query: 135  cttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaa 194
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7607 cttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaa 7548

                                   
Query: 195  gtaccttgctgtgctcctttacc 217
            |||||||||||||||||||||||
Sbjct: 7547 gtaccttgctgtgctcctttacc 7525



 Score =  147 bits (74), Expect = 2e-32
 Identities = 82/86 (95%)
 Strand = Plus / Minus

                                                                        
Query: 226  gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggntcatgtangtg 285
            |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 7295 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 7236

                                      
Query: 286  tcancangctgcacacgcttgacatt 311
            ||| || |||||||||||||||||||
Sbjct: 7235 tcagcaagctgcacacgcttgacatt 7210
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>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  327 bits (165), Expect = 1e-86
 Identities = 199/206 (96%), Gaps = 4/206 (1%)
 Strand = Plus / Minus

                                                                        
Query: 15   atatattaacanancatgcccagcaatacgcttggatgcgatgcggacttag-gtaggta 73
            ||||||||||| | ||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 1675 atatattaacaaaacatgcccagcaat-cgcttggatgcgatgcggacttagtgtaggta 1617

                                                                        
Query: 74   aaacatcagatattaaaagtggcatgcttaaaaggtgtnaaggcagctgccgt-cgtcgc 132
            |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 1616 aaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgttcgtcgc 1557

                                                                        
Query: 133  tccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggca-cgggc 191
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1556 tccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcatcgggc 1497

                                      
Query: 192  aaagtaccttgctgtgctcctttacc 217
            ||||||||||||||||||||||||||
Sbjct: 1496 aaagtaccttgctgtgctcctttacc 1471



 Score =  147 bits (74), Expect = 2e-32
 Identities = 82/86 (95%)
 Strand = Plus / Minus

                                                                        
Query: 226  gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggntcatgtangtg 285
            |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 1412 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 1353

                                      
Query: 286  tcancangctgcacacgcttgacatt 311
            ||| || |||||||||||||||||||
Sbjct: 1352 tcagcaagctgcacacgcttgacatt 1327
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>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  252 bits (127), Expect = 6e-64
 Identities = 198/223 (88%), Gaps = 1/223 (0%)
 Strand = Plus / Minus

                                                                        
Query: 89   aaagtggcatgcttaaaaggtgtnaaggcagctgccgtcgtcgctccttgccgttgggtc 148
            ||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||
Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430

                                                                        
Query: 149  gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 208
            | ||||||||||||   ||||||| |||||||||||||| |||||||| ||||| |||||
Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370

                                                                        
Query: 209  tcctttaccgtnttnntgaaccagtcttcatcgcatcctggttagcatcacccagagctg 268
            |||||||||||      |||||||||||||| ||||||| ||| ||||||||||||||||
Sbjct: 1369 tcctttaccgta-gaaggaaccagtcttcatggcatccttgttcgcatcacccagagctg 1311

                                                       
Query: 269  cctggntcatgtangtgtcancangctgcacacgcttgacatt 311
            ||||| ||||||| |||||  || |||||||||||||||||||
Sbjct: 1310 cctggctcatgtaagtgtccgcaagctgcacacgcttgacatt 1268
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>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase
           precursor RNA, partial cds; nuclear gene for chloroplast
           product
          Length = 850

 Score =  214 bits (108), Expect = 1e-52
 Identities = 186/209 (88%), Gaps = 8/209 (3%)
 Strand = Plus / Minus

                                                                       
Query: 15  atatattaacanancatgcccagcaatacgcttggatgcgatgcgg-acttaggta---- 69
           ||||||||||| | ||||||||||||| |||||||||||||||||| |||||||||    
Sbjct: 746 atatattaacaaaacatgcccagcaat-cgcttggatgcgatgcggtacttaggtacaaa 688

                                                                       
Query: 70  -ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtnaaggcagctgccgtcg 128
            | |||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||
Sbjct: 687 ggataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcg 629

                                                                       
Query: 129 tcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacg 188
           || ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || 
Sbjct: 628 tcactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtaca 569

                                        
Query: 189 ggcaaagtaccttgctgtgctcctttacc 217
           |||||||||||||||||||| ||||||||
Sbjct: 568 ggcaaagtaccttgctgtgcccctttacc 540



 Score =  143 bits (72), Expect = 4e-31
 Identities = 80/84 (95%)
 Strand = Plus / Minus

                                                                       
Query: 228 accagtcttcatcgcatcctggttagcatcacccagagctgcctggntcatgtangtgtc 287
           |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 480 accagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtc 421

                                   
Query: 288 ancangctgcacacgcttgacatt 311
           | || |||||||||||||||||||
Sbjct: 420 agcaagctgcacacgcttgacatt 397
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>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  214 bits (108), Expect = 1e-52
 Identities = 186/209 (88%), Gaps = 8/209 (3%)
 Strand = Plus / Minus

                                                                        
Query: 15   atatattaacanancatgcccagcaatacgcttggatgcgatgcgg-acttaggta---- 69
            ||||||||||| | ||||||||||||| |||||||||||||||||| |||||||||    
Sbjct: 1596 atatattaacaaaacatgcccagcaat-cgcttggatgcgatgcggtacttaggtacaaa 1538

                                                                        
Query: 70   -ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtnaaggcagctgccgtcg 128
             | |||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||
Sbjct: 1537 ggataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcg 1479

                                                                        
Query: 129  tcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacg 188
            || ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || 
Sbjct: 1478 tcactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtaca 1419

                                         
Query: 189  ggcaaagtaccttgctgtgctcctttacc 217
            |||||||||||||||||||| ||||||||
Sbjct: 1418 ggcaaagtaccttgctgtgcccctttacc 1390



 Score =  143 bits (72), Expect = 4e-31
 Identities = 80/84 (95%)
 Strand = Plus / Minus

                                                                        
Query: 228  accagtcttcatcgcatcctggttagcatcacccagagctgcctggntcatgtangtgtc 287
            |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct: 1330 accagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtc 1271

                                    
Query: 288  ancangctgcacacgcttgacatt 311
            | || |||||||||||||||||||
Sbjct: 1270 agcaagctgcacacgcttgacatt 1247
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>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  170 bits (86), Expect = 2e-39
 Identities = 118/129 (91%)
 Strand = Plus / Minus

                                                                        
Query: 89   aaagtggcatgcttaaaaggtgtnaaggcagctgccgtcgtcgctccttgccgttgggtc 148
            ||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||
Sbjct: 1527 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1468

                                                                        
Query: 149  gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 208
            | ||||||||||||   ||||||| |||||||||||||| |||||||| ||||| |||||
Sbjct: 1467 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1408

                     
Query: 209  tcctttacc 217
            |||||||||
Sbjct: 1407 tcctttacc 1399



 Score =  115 bits (58), Expect = 9e-23
 Identities = 78/86 (90%)
 Strand = Plus / Minus

                                                                        
Query: 226  gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggntcatgtangtg 285
            |||||||||||||| ||||||| ||| ||||||||||||||||||||| ||||||| |||
Sbjct: 1343 gaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggctcatgtaagtg 1284

                                      
Query: 286  tcancangctgcacacgcttgacatt 311
            ||  || |||||||||||||||||||
Sbjct: 1283 tccgcaagctgcacacgcttgacatt 1258
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>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco
           activase (rba1 gene)
          Length = 321

 Score =  147 bits (74), Expect = 2e-32
 Identities = 82/86 (95%)
 Strand = Plus / Minus

                                                                       
Query: 226 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggntcatgtangtg 285
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 276 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 217

                                     
Query: 286 tcancangctgcacacgcttgacatt 311
           ||| || |||||||||||||||||||
Sbjct: 216 tcagcaagctgcacacgcttgacatt 191
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>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  127 bits (64), Expect = 2e-26
 Identities = 87/95 (91%)
 Strand = Plus / Plus

                                                                          
Query: 98     tgcttaaaaggtgtnaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 157
              |||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217

                                                 
Query: 158    ggcattttggtcggtgcaaccttccggcacgggca 192
              ||||    |||||||||||||||||||||| ||||
Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                          
Query: 116    gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 175
              ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112

                             
Query: 176    accttccggcacggg 190
               ||  ||||||||||
Sbjct: 112113 tcccgccggcacggg 112127
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>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  127 bits (64), Expect = 2e-26
 Identities = 87/95 (91%)
 Strand = Plus / Plus

                                                                         
Query: 98    tgcttaaaaggtgtnaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 157
             |||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098

                                                
Query: 158   ggcattttggtcggtgcaaccttccggcacgggca 192
             ||||    |||||||||||||||||||||| ||||
Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                         
Query: 116   gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 175
             ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989

                            
Query: 176   accttccggcacggg 190
              ||  ||||||||||
Sbjct: 33990 tcccgccggcacggg 34004
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>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            (rca) mRNA, complete cds
          Length = 1675

 Score =  127 bits (64), Expect = 2e-26
 Identities = 87/95 (91%)
 Strand = Plus / Minus

                                                                        
Query: 98   tgcttaaaaggtgtnaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 157
            |||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461

                                               
Query: 158  ggcattttggtcggtgcaaccttccggcacgggca 192
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426
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>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate
            carboxylase activase large isoform precursor protein,
            complete cds, clone: 13YPR038
          Length = 1558

 Score =  127 bits (64), Expect = 2e-26
 Identities = 87/95 (91%)
 Strand = Plus / Minus

                                                                        
Query: 98   tgcttaaaaggtgtnaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 157
            |||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371

                                               
Query: 158  ggcattttggtcggtgcaaccttccggcacgggca 192
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggca 1336
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  127 bits (64), Expect = 2e-26
 Identities = 87/95 (91%)
 Strand = Plus / Plus

                                                                            
Query: 98       tgcttaaaaggtgtnaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 157
                |||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360

                                                   
Query: 158      ggcattttggtcggtgcaaccttccggcacgggca 192
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 116      gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 175
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251

                               
Query: 176      accttccggcacggg 190
                 ||  ||||||||||
Sbjct: 28307252 tcccgccggcacggg 28307266
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>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
            insert sequence
          Length = 1682

 Score =  127 bits (64), Expect = 2e-26
 Identities = 87/95 (91%)
 Strand = Plus / Minus

                                                                        
Query: 98   tgcttaaaaggtgtnaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 157
            |||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455

                                               
Query: 158  ggcattttggtcggtgcaaccttccggcacgggca 192
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggca 1420
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>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
            insert sequence
          Length = 1680

 Score =  127 bits (64), Expect = 2e-26
 Identities = 87/95 (91%)
 Strand = Plus / Minus

                                                                        
Query: 98   tgcttaaaaggtgtnaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 157
            |||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493

                                               
Query: 158  ggcattttggtcggtgcaaccttccggcacgggca 192
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggca 1458
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>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
            insert sequence
          Length = 1691

 Score =  127 bits (64), Expect = 2e-26
 Identities = 87/95 (91%)
 Strand = Plus / Minus

                                                                        
Query: 98   tgcttaaaaggtgtnaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 157
            |||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492

                                               
Query: 158  ggcattttggtcggtgcaaccttccggcacgggca 192
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggca 1457
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>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
            insert sequence
          Length = 1470

 Score =  127 bits (64), Expect = 2e-26
 Identities = 87/95 (91%)
 Strand = Plus / Minus

                                                                        
Query: 98   tgcttaaaaggtgtnaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 157
            |||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276

                                               
Query: 158  ggcattttggtcggtgcaaccttccggcacgggca 192
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggca 1241
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  127 bits (64), Expect = 2e-26
 Identities = 87/95 (91%)
 Strand = Plus / Plus

                                                                            
Query: 98       tgcttaaaaggtgtnaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 157
                |||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809

                                                   
Query: 158      ggcattttggtcggtgcaaccttccggcacgggca 192
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 116      gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 175
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700

                               
Query: 176      accttccggcacggg 190
                 ||  ||||||||||
Sbjct: 28289701 tcccgccggcacggg 28289715
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>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
            precursor, complete cds
          Length = 1706

 Score =  127 bits (64), Expect = 2e-26
 Identities = 87/95 (91%)
 Strand = Plus / Minus

                                                                        
Query: 98   tgcttaaaaggtgtnaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 157
            |||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497

                                               
Query: 158  ggcattttggtcggtgcaaccttccggcacgggca 192
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggca 1462
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>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
            precursor, complete cds
          Length = 1623

 Score =  127 bits (64), Expect = 2e-26
 Identities = 87/95 (91%)
 Strand = Plus / Minus

                                                                        
Query: 98   tgcttaaaaggtgtnaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 157
            |||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406

                                               
Query: 158  ggcattttggtcggtgcaaccttccggcacgggca 192
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggca 1371
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>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small
           isoform precursor, mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 93

 Score =  115 bits (58), Expect = 9e-23
 Identities = 81/89 (91%)
 Strand = Plus / Minus

                                                                       
Query: 104 aaaggtgtnaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 163
           |||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||  
Sbjct: 93  aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34

                                        
Query: 164 ttggtcggtgcaaccttccggcacgggca 192
             |||||||||||||||||||||| ||||
Sbjct: 33  agggtcggtgcaaccttccggcacaggca 5
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>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
            insert sequence
          Length = 1721

 Score =  111 bits (56), Expect = 1e-21
 Identities = 86/95 (90%), Gaps = 1/95 (1%)
 Strand = Plus / Minus

                                                                        
Query: 98   tgcttaaaaggtgtnaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 157
            |||||||||||||| |||||||||||||||||||||||| |||||||||||| | |||||
Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504

                                               
Query: 158  ggcattttggtcggtgcaaccttccggcacgggca 192
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggca 1469
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>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic
           sequence
          Length = 234

 Score = 95.6 bits (48), Expect = 8e-17
 Identities = 83/95 (87%)
 Strand = Plus / Minus

                                                                       
Query: 98  tgcttaaaaggtgtnaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 157
           |||||||||| | | |||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76

                                              
Query: 158 ggcattttggtcggtgcaaccttccggcacgggca 192
           ||||    ||||||  |||||||||||||| ||||
Sbjct: 75  ggcaacagggtcgggtcaaccttccggcacaggca 41
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 80/95 (84%)
 Strand = Plus / Minus

                                                                           
Query: 98      tgcttaaaaggtgtnaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 157
               |||||| ||||||| ||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354

                                                  
Query: 158     ggcattttggtcggtgcaaccttccggcacgggca 192
               ||||    |||||||||||||||||||||| ||||
Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319
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>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0638A12
          Length = 140731

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 80/95 (84%)
 Strand = Plus / Minus

                                                                         
Query: 98    tgcttaaaaggtgtnaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 157
             |||||| ||||||| ||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728

                                                
Query: 158   ggcattttggtcggtgcaaccttccggcacgggca 192
             ||||    |||||||||||||||||||||| ||||
Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693
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>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                        
Query: 114  aggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtg 173
            ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||||||| 
Sbjct: 1444 aggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccggtcggta 1385

                    
Query: 174  caaccttc 181
            ||||||||
Sbjct: 1384 caaccttc 1377
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>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                        
Query: 114  aggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtg 173
            ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||||||| 
Sbjct: 1269 aggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccggtcggta 1210

                    
Query: 174  caaccttc 181
            ||||||||
Sbjct: 1209 caaccttc 1202
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>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds
          Length = 1436

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                        
Query: 114  aggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtg 173
            ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||||||| 
Sbjct: 1143 aggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccggtcggta 1084

                    
Query: 174  caaccttc 181
            ||||||||
Sbjct: 1083 caaccttc 1076
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>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 59/68 (86%)
 Strand = Plus / Minus

                                                                        
Query: 114  aggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtg 173
            ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||||||| 
Sbjct: 1299 aggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccggtcggta 1240

                    
Query: 174  caaccttc 181
            ||||||||
Sbjct: 1239 caaccttc 1232
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>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase
           precursor, mRNA, partial cds
          Length = 1336

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 65/80 (81%)
 Strand = Plus / Minus

                                                                       
Query: 229 ccagtcttcatcgcatcctggttagcatcacccagagctgcctggntcatgtangtgtca 288
           ||||||||||| || |||| ||| || ||||| ||||| |||| | | | |||  |||||
Sbjct: 911 ccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggtacttgtca 852

                               
Query: 289 ncangctgcacacgcttgac 308
            || ||||||||||||||||
Sbjct: 851 gcaagctgcacacgcttgac 832
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>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            precursor (rca1) mRNA, complete cds
          Length = 1424

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 65/80 (81%)
 Strand = Plus / Minus

                                                                        
Query: 229  ccagtcttcatcgcatcctggttagcatcacccagagctgcctggntcatgtangtgtca 288
            ||||||||||| || |||| ||| || ||||| ||||| |||| | | | |||  |||||
Sbjct: 1306 ccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggtacttgtca 1247

                                
Query: 289  ncangctgcacacgcttgac 308
             || ||||||||||||||||
Sbjct: 1246 gcaagctgcacacgcttgac 1227
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>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence
          Length = 1750

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 65/80 (81%)
 Strand = Plus / Minus

                                                                        
Query: 229  ccagtcttcatcgcatcctggttagcatcacccagagctgcctggntcatgtangtgtca 288
            ||||||||||| || |||| ||| || ||||| ||||| |||| | | | |||  |||||
Sbjct: 1306 ccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggtacttgtca 1247

                                
Query: 289  ncangctgcacacgcttgac 308
             || ||||||||||||||||
Sbjct: 1246 gcaagctgcacacgcttgac 1227
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 74      aaacatcagatattaaaagtg 94
               |||||||||||||||||||||
Sbjct: 3040440 aaacatcagatattaaaagtg 3040420
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 74      aaacatcagatattaaaagtg 94
               |||||||||||||||||||||
Sbjct: 3040385 aaacatcagatattaaaagtg 3040365
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>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 159711

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 74     aaacatcagatattaaaagtg 94
              |||||||||||||||||||||
Sbjct: 114403 aaacatcagatattaaaagtg 114423
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>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1694

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 241  gcatcctggttagcatcacc 260
            ||||||||||||||||||||
Sbjct: 1355 gcatcctggttagcatcacc 1336
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>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence
          Length = 177402

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 79     tcagatattaaaagtggcat 98
              ||||||||||||||||||||
Sbjct: 141058 tcagatattaaaagtggcat 141077
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>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence
          Length = 163782

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 79     tcagatattaaaagtggcat 98
              ||||||||||||||||||||
Sbjct: 142564 tcagatattaaaagtggcat 142583
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>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence
          Length = 204813

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 79    tcagatattaaaagtggcat 98
             ||||||||||||||||||||
Sbjct: 95930 tcagatattaaaagtggcat 95911
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>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence
          Length = 119249

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 254   catcacccagagctgcctgg 273
             ||||||||||||||||||||
Sbjct: 51275 catcacccagagctgcctgg 51256
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>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete
              sequence
          Length = 230848

 Score = 40.1 bits (20), Expect = 4.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 78     atcagatattaaaagtggcatgct 101
              ||||||||||||||||| ||||||
Sbjct: 127875 atcagatattaaaagtgccatgct 127852


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,514,648
Number of Sequences: 3902068
Number of extensions: 1514648
Number of successful extensions: 25264
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25090
Number of HSP's gapped (non-prelim): 147
length of query: 315
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 293
effective length of database: 17,147,199,772
effective search space: 5024129533196
effective search space used: 5024129533196
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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